Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1451

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1450 and Echvi_1451 are separated by 220 nucleotidesEchvi_1451 and Echvi_1452 are separated by 80 nucleotides Echvi_1450: Echvi_1450 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 1,662,916 to 1,664,271 _1450 Echvi_1451: Echvi_1451 - Predicted membrane protein, at 1,664,492 to 1,664,911 _1451 Echvi_1452: Echvi_1452 - dTDP-glucose pyrophosphorylase, at 1,664,992 to 1,665,894 _1452 Position (kb) 1664 1665Strain fitness (log2 ratio) -3 -2 -1 0 1at 1663.494 kb on + strand, within Echvi_1450at 1663.494 kb on + strand, within Echvi_1450at 1663.495 kb on - strand, within Echvi_1450at 1663.567 kb on - strand, within Echvi_1450at 1663.572 kb on - strand, within Echvi_1450at 1663.584 kb on + strand, within Echvi_1450at 1663.593 kb on + strand, within Echvi_1450at 1663.686 kb on + strand, within Echvi_1450at 1663.694 kb on - strand, within Echvi_1450at 1663.914 kb on + strand, within Echvi_1450at 1663.915 kb on - strand, within Echvi_1450at 1663.915 kb on - strand, within Echvi_1450at 1664.042 kb on + strand, within Echvi_1450at 1664.043 kb on - strand, within Echvi_1450at 1664.043 kb on - strand, within Echvi_1450at 1664.046 kb on + strand, within Echvi_1450at 1664.101 kb on + strand, within Echvi_1450at 1664.102 kb on - strand, within Echvi_1450at 1664.102 kb on - strand, within Echvi_1450at 1664.102 kb on - strand, within Echvi_1450at 1664.106 kb on + strand, within Echvi_1450at 1664.106 kb on + strand, within Echvi_1450at 1664.125 kb on - strand, within Echvi_1450at 1664.125 kb on - strand, within Echvi_1450at 1664.238 kb on + strandat 1664.295 kb on + strandat 1664.301 kb on + strandat 1664.373 kb on + strandat 1664.387 kb on - strandat 1664.387 kb on - strandat 1664.409 kb on + strandat 1664.440 kb on + strandat 1664.441 kb on - strandat 1664.441 kb on - strandat 1664.441 kb on - strandat 1664.456 kb on - strandat 1664.536 kb on + strand, within Echvi_1451at 1664.733 kb on - strand, within Echvi_1451at 1664.744 kb on + strand, within Echvi_1451at 1664.744 kb on + strand, within Echvi_1451at 1664.745 kb on - strand, within Echvi_1451at 1664.757 kb on - strand, within Echvi_1451at 1664.757 kb on - strand, within Echvi_1451at 1664.764 kb on + strand, within Echvi_1451at 1664.852 kb on + strand, within Echvi_1451at 1664.858 kb on + strand, within Echvi_1451at 1664.859 kb on - strand, within Echvi_1451at 1664.928 kb on + strandat 1664.939 kb on + strandat 1664.963 kb on + strandat 1664.968 kb on + strandat 1665.074 kb on + strandat 1665.117 kb on + strand, within Echvi_1452at 1665.312 kb on + strand, within Echvi_1452at 1665.360 kb on + strand, within Echvi_1452at 1665.360 kb on + strand, within Echvi_1452at 1665.366 kb on + strand, within Echvi_1452at 1665.366 kb on + strand, within Echvi_1452at 1665.366 kb on + strand, within Echvi_1452at 1665.367 kb on - strand, within Echvi_1452at 1665.403 kb on - strand, within Echvi_1452at 1665.443 kb on + strand, within Echvi_1452at 1665.453 kb on + strand, within Echvi_1452at 1665.453 kb on + strand, within Echvi_1452at 1665.453 kb on + strand, within Echvi_1452at 1665.497 kb on - strand, within Echvi_1452at 1665.521 kb on + strand, within Echvi_1452at 1665.521 kb on + strand, within Echvi_1452at 1665.754 kb on - strand, within Echvi_1452at 1665.834 kb on + strandat 1665.869 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,663,494 + Echvi_1450 0.43 -2.2
1,663,494 + Echvi_1450 0.43 -2.8
1,663,495 - Echvi_1450 0.43 -1.5
1,663,567 - Echvi_1450 0.48 -1.8
1,663,572 - Echvi_1450 0.48 -1.3
1,663,584 + Echvi_1450 0.49 -3.0
1,663,593 + Echvi_1450 0.50 -1.8
1,663,686 + Echvi_1450 0.57 -2.5
1,663,694 - Echvi_1450 0.57 -3.4
1,663,914 + Echvi_1450 0.74 -0.6
1,663,915 - Echvi_1450 0.74 -1.3
1,663,915 - Echvi_1450 0.74 -0.1
1,664,042 + Echvi_1450 0.83 -3.2
1,664,043 - Echvi_1450 0.83 -1.6
1,664,043 - Echvi_1450 0.83 -1.6
1,664,046 + Echvi_1450 0.83 +0.8
1,664,101 + Echvi_1450 0.87 +1.5
1,664,102 - Echvi_1450 0.87 -0.3
1,664,102 - Echvi_1450 0.87 -2.4
1,664,102 - Echvi_1450 0.87 -0.3
1,664,106 + Echvi_1450 0.88 -0.1
1,664,106 + Echvi_1450 0.88 -0.9
1,664,125 - Echvi_1450 0.89 -3.2
1,664,125 - Echvi_1450 0.89 -2.4
1,664,238 + -0.7
1,664,295 + -1.0
1,664,301 + -1.3
1,664,373 + +1.4
1,664,387 - -1.0
1,664,387 - -0.2
1,664,409 + -0.7
1,664,440 + +0.1
1,664,441 - -0.8
1,664,441 - -0.4
1,664,441 - +0.5
1,664,456 - -0.1
1,664,536 + Echvi_1451 0.10 +0.4
1,664,733 - Echvi_1451 0.57 -1.4
1,664,744 + Echvi_1451 0.60 -0.1
1,664,744 + Echvi_1451 0.60 -0.1
1,664,745 - Echvi_1451 0.60 -1.4
1,664,757 - Echvi_1451 0.63 +0.8
1,664,757 - Echvi_1451 0.63 +0.7
1,664,764 + Echvi_1451 0.65 +1.0
1,664,852 + Echvi_1451 0.86 -0.9
1,664,858 + Echvi_1451 0.87 -1.1
1,664,859 - Echvi_1451 0.87 -2.5
1,664,928 + +0.1
1,664,939 + -0.5
1,664,963 + -0.9
1,664,968 + -1.5
1,665,074 + +0.6
1,665,117 + Echvi_1452 0.14 -0.0
1,665,312 + Echvi_1452 0.35 -0.5
1,665,360 + Echvi_1452 0.41 -0.8
1,665,360 + Echvi_1452 0.41 -0.2
1,665,366 + Echvi_1452 0.41 -3.0
1,665,366 + Echvi_1452 0.41 +0.8
1,665,366 + Echvi_1452 0.41 -2.4
1,665,367 - Echvi_1452 0.42 -0.3
1,665,403 - Echvi_1452 0.46 -1.9
1,665,443 + Echvi_1452 0.50 -1.6
1,665,453 + Echvi_1452 0.51 -1.2
1,665,453 + Echvi_1452 0.51 -2.5
1,665,453 + Echvi_1452 0.51 +0.5
1,665,497 - Echvi_1452 0.56 +0.1
1,665,521 + Echvi_1452 0.59 +1.0
1,665,521 + Echvi_1452 0.59 +0.9
1,665,754 - Echvi_1452 0.84 -1.8
1,665,834 + -2.1
1,665,869 - -0.6

Or see this region's nucleotide sequence