Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1277

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1276 and Echvi_1277 are separated by 250 nucleotidesEchvi_1277 and Echvi_1278 are separated by 108 nucleotides Echvi_1276: Echvi_1276 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 1,464,489 to 1,465,415 _1276 Echvi_1277: Echvi_1277 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 1,465,666 to 1,466,169 _1277 Echvi_1278: Echvi_1278 - Periplasmic protease, at 1,466,278 to 1,467,450 _1278 Position (kb) 1465 1466 1467Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1464.687 kb on + strand, within Echvi_1276at 1464.688 kb on - strand, within Echvi_1276at 1464.731 kb on - strand, within Echvi_1276at 1464.732 kb on + strand, within Echvi_1276at 1464.733 kb on - strand, within Echvi_1276at 1464.742 kb on + strand, within Echvi_1276at 1464.743 kb on - strand, within Echvi_1276at 1464.743 kb on - strand, within Echvi_1276at 1464.758 kb on + strand, within Echvi_1276at 1464.870 kb on + strand, within Echvi_1276at 1464.870 kb on + strand, within Echvi_1276at 1464.870 kb on + strand, within Echvi_1276at 1464.870 kb on + strand, within Echvi_1276at 1464.871 kb on - strand, within Echvi_1276at 1464.883 kb on + strand, within Echvi_1276at 1464.883 kb on + strand, within Echvi_1276at 1464.884 kb on - strand, within Echvi_1276at 1464.884 kb on - strand, within Echvi_1276at 1464.884 kb on - strand, within Echvi_1276at 1464.928 kb on + strand, within Echvi_1276at 1464.986 kb on + strand, within Echvi_1276at 1464.986 kb on + strand, within Echvi_1276at 1464.986 kb on + strand, within Echvi_1276at 1464.987 kb on - strand, within Echvi_1276at 1464.987 kb on - strand, within Echvi_1276at 1464.987 kb on - strand, within Echvi_1276at 1464.991 kb on + strand, within Echvi_1276at 1464.992 kb on - strand, within Echvi_1276at 1465.027 kb on + strand, within Echvi_1276at 1465.027 kb on + strand, within Echvi_1276at 1465.027 kb on + strand, within Echvi_1276at 1465.028 kb on - strand, within Echvi_1276at 1465.033 kb on + strand, within Echvi_1276at 1465.033 kb on + strand, within Echvi_1276at 1465.034 kb on - strand, within Echvi_1276at 1465.069 kb on + strand, within Echvi_1276at 1465.070 kb on - strand, within Echvi_1276at 1465.072 kb on + strand, within Echvi_1276at 1465.072 kb on + strand, within Echvi_1276at 1465.131 kb on - strand, within Echvi_1276at 1465.405 kb on - strandat 1465.405 kb on - strandat 1465.442 kb on + strandat 1465.463 kb on + strandat 1465.464 kb on - strandat 1465.483 kb on + strandat 1465.483 kb on + strandat 1465.483 kb on + strandat 1465.484 kb on - strandat 1465.484 kb on - strandat 1465.487 kb on + strandat 1465.488 kb on - strandat 1465.488 kb on - strandat 1465.493 kb on + strandat 1465.494 kb on - strandat 1465.494 kb on - strandat 1465.495 kb on + strandat 1465.496 kb on - strandat 1465.496 kb on - strandat 1465.498 kb on + strandat 1465.498 kb on + strandat 1465.499 kb on - strandat 1465.539 kb on - strandat 1465.583 kb on + strandat 1465.587 kb on + strandat 1465.587 kb on + strandat 1465.587 kb on + strandat 1465.588 kb on - strandat 1465.588 kb on - strandat 1465.588 kb on - strandat 1465.590 kb on - strandat 1465.590 kb on - strandat 1465.590 kb on - strandat 1465.591 kb on + strandat 1465.591 kb on + strandat 1465.697 kb on - strandat 1465.697 kb on - strandat 1465.803 kb on + strand, within Echvi_1277at 1465.815 kb on - strand, within Echvi_1277at 1465.827 kb on - strand, within Echvi_1277at 1465.955 kb on + strand, within Echvi_1277at 1465.955 kb on + strand, within Echvi_1277at 1465.956 kb on - strand, within Echvi_1277at 1466.034 kb on + strand, within Echvi_1277at 1466.035 kb on - strand, within Echvi_1277at 1466.101 kb on + strand, within Echvi_1277at 1466.102 kb on - strand, within Echvi_1277at 1466.102 kb on - strand, within Echvi_1277at 1466.157 kb on - strandat 1466.157 kb on - strandat 1466.163 kb on + strandat 1466.163 kb on + strandat 1466.181 kb on - strandat 1466.191 kb on + strandat 1466.191 kb on + strandat 1466.194 kb on - strandat 1466.194 kb on - strandat 1466.194 kb on - strandat 1466.217 kb on + strandat 1466.217 kb on + strandat 1466.217 kb on + strandat 1466.217 kb on + strandat 1466.218 kb on - strandat 1466.263 kb on - strandat 1466.300 kb on + strandat 1466.300 kb on + strandat 1466.319 kb on - strandat 1466.355 kb on + strandat 1466.355 kb on + strandat 1466.356 kb on - strandat 1466.356 kb on - strandat 1466.410 kb on + strand, within Echvi_1278at 1466.410 kb on + strand, within Echvi_1278at 1466.411 kb on - strand, within Echvi_1278at 1466.412 kb on + strand, within Echvi_1278at 1466.424 kb on + strand, within Echvi_1278at 1466.550 kb on + strand, within Echvi_1278at 1466.566 kb on + strand, within Echvi_1278at 1466.569 kb on + strand, within Echvi_1278at 1466.569 kb on + strand, within Echvi_1278at 1466.569 kb on + strand, within Echvi_1278at 1466.570 kb on - strand, within Echvi_1278at 1466.587 kb on + strand, within Echvi_1278at 1466.588 kb on - strand, within Echvi_1278at 1466.608 kb on + strand, within Echvi_1278at 1466.654 kb on - strand, within Echvi_1278at 1466.665 kb on + strand, within Echvi_1278at 1466.665 kb on + strand, within Echvi_1278at 1466.665 kb on + strand, within Echvi_1278at 1466.666 kb on - strand, within Echvi_1278at 1466.666 kb on - strand, within Echvi_1278at 1466.666 kb on - strand, within Echvi_1278at 1466.905 kb on - strand, within Echvi_1278at 1466.909 kb on - strand, within Echvi_1278at 1466.923 kb on - strand, within Echvi_1278at 1466.972 kb on - strand, within Echvi_1278at 1467.036 kb on + strand, within Echvi_1278at 1467.037 kb on - strand, within Echvi_1278at 1467.060 kb on + strand, within Echvi_1278at 1467.060 kb on + strand, within Echvi_1278at 1467.061 kb on - strand, within Echvi_1278at 1467.061 kb on - strand, within Echvi_1278at 1467.085 kb on - strand, within Echvi_1278at 1467.085 kb on - strand, within Echvi_1278at 1467.085 kb on - strand, within Echvi_1278at 1467.152 kb on + strand, within Echvi_1278at 1467.153 kb on - strand, within Echvi_1278at 1467.153 kb on - strand, within Echvi_1278at 1467.159 kb on + strand, within Echvi_1278at 1467.159 kb on + strand, within Echvi_1278at 1467.160 kb on - strand, within Echvi_1278at 1467.160 kb on - strand, within Echvi_1278at 1467.160 kb on - strand, within Echvi_1278at 1467.163 kb on + strand, within Echvi_1278at 1467.163 kb on + strand, within Echvi_1278at 1467.164 kb on - strand, within Echvi_1278at 1467.164 kb on - strand, within Echvi_1278at 1467.164 kb on - strand, within Echvi_1278at 1467.164 kb on - strand, within Echvi_1278at 1467.164 kb on - strand, within Echvi_1278

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,464,687 + Echvi_1276 0.21 -1.5
1,464,688 - Echvi_1276 0.21 -0.0
1,464,731 - Echvi_1276 0.26 -0.6
1,464,732 + Echvi_1276 0.26 +1.0
1,464,733 - Echvi_1276 0.26 -0.3
1,464,742 + Echvi_1276 0.27 +0.7
1,464,743 - Echvi_1276 0.27 +0.6
1,464,743 - Echvi_1276 0.27 +0.0
1,464,758 + Echvi_1276 0.29 -0.5
1,464,870 + Echvi_1276 0.41 +0.7
1,464,870 + Echvi_1276 0.41 -0.9
1,464,870 + Echvi_1276 0.41 +0.7
1,464,870 + Echvi_1276 0.41 +0.8
1,464,871 - Echvi_1276 0.41 -0.1
1,464,883 + Echvi_1276 0.43 +1.1
1,464,883 + Echvi_1276 0.43 +1.0
1,464,884 - Echvi_1276 0.43 -0.4
1,464,884 - Echvi_1276 0.43 -0.7
1,464,884 - Echvi_1276 0.43 -0.6
1,464,928 + Echvi_1276 0.47 -0.3
1,464,986 + Echvi_1276 0.54 -1.1
1,464,986 + Echvi_1276 0.54 -0.4
1,464,986 + Echvi_1276 0.54 -1.0
1,464,987 - Echvi_1276 0.54 -0.2
1,464,987 - Echvi_1276 0.54 +0.3
1,464,987 - Echvi_1276 0.54 -0.9
1,464,991 + Echvi_1276 0.54 +0.8
1,464,992 - Echvi_1276 0.54 -0.3
1,465,027 + Echvi_1276 0.58 -2.2
1,465,027 + Echvi_1276 0.58 -0.5
1,465,027 + Echvi_1276 0.58 -0.4
1,465,028 - Echvi_1276 0.58 +1.5
1,465,033 + Echvi_1276 0.59 +1.5
1,465,033 + Echvi_1276 0.59 -0.6
1,465,034 - Echvi_1276 0.59 -0.3
1,465,069 + Echvi_1276 0.63 -0.2
1,465,070 - Echvi_1276 0.63 -1.7
1,465,072 + Echvi_1276 0.63 -0.4
1,465,072 + Echvi_1276 0.63 +1.3
1,465,131 - Echvi_1276 0.69 -0.8
1,465,405 - -1.9
1,465,405 - -1.5
1,465,442 + -0.6
1,465,463 + +1.5
1,465,464 - -1.2
1,465,483 + +1.2
1,465,483 + -0.1
1,465,483 + +1.0
1,465,484 - -0.4
1,465,484 - -0.4
1,465,487 + -0.0
1,465,488 - -0.4
1,465,488 - +1.2
1,465,493 + -0.3
1,465,494 - -0.9
1,465,494 - -1.2
1,465,495 + -0.4
1,465,496 - +0.4
1,465,496 - -1.8
1,465,498 + +0.0
1,465,498 + -0.9
1,465,499 - -2.0
1,465,539 - -0.8
1,465,583 + -1.4
1,465,587 + +0.8
1,465,587 + +0.1
1,465,587 + -0.1
1,465,588 - -0.5
1,465,588 - -1.9
1,465,588 - -0.7
1,465,590 - -0.4
1,465,590 - -2.7
1,465,590 - -2.9
1,465,591 + +0.2
1,465,591 + -1.3
1,465,697 - +1.5
1,465,697 - -0.8
1,465,803 + Echvi_1277 0.27 -0.3
1,465,815 - Echvi_1277 0.30 -0.1
1,465,827 - Echvi_1277 0.32 +2.5
1,465,955 + Echvi_1277 0.57 -0.7
1,465,955 + Echvi_1277 0.57 +0.0
1,465,956 - Echvi_1277 0.58 -0.6
1,466,034 + Echvi_1277 0.73 +0.7
1,466,035 - Echvi_1277 0.73 +1.8
1,466,101 + Echvi_1277 0.86 +0.5
1,466,102 - Echvi_1277 0.87 +1.7
1,466,102 - Echvi_1277 0.87 +0.7
1,466,157 - -0.4
1,466,157 - -0.4
1,466,163 + +0.2
1,466,163 + +0.3
1,466,181 - -1.9
1,466,191 + +1.6
1,466,191 + +0.1
1,466,194 - -0.1
1,466,194 - +0.1
1,466,194 - -0.5
1,466,217 + -0.8
1,466,217 + +0.6
1,466,217 + -0.2
1,466,217 + -1.3
1,466,218 - +0.1
1,466,263 - +2.1
1,466,300 + -0.3
1,466,300 + -0.2
1,466,319 - +0.3
1,466,355 + -0.8
1,466,355 + +0.7
1,466,356 - +0.9
1,466,356 - +0.2
1,466,410 + Echvi_1278 0.11 +0.8
1,466,410 + Echvi_1278 0.11 +0.6
1,466,411 - Echvi_1278 0.11 -0.7
1,466,412 + Echvi_1278 0.11 +1.5
1,466,424 + Echvi_1278 0.12 -2.3
1,466,550 + Echvi_1278 0.23 +1.1
1,466,566 + Echvi_1278 0.25 -0.8
1,466,569 + Echvi_1278 0.25 +0.6
1,466,569 + Echvi_1278 0.25 -0.3
1,466,569 + Echvi_1278 0.25 +1.5
1,466,570 - Echvi_1278 0.25 -1.7
1,466,587 + Echvi_1278 0.26 +0.1
1,466,588 - Echvi_1278 0.26 +0.1
1,466,608 + Echvi_1278 0.28 +1.8
1,466,654 - Echvi_1278 0.32 +0.3
1,466,665 + Echvi_1278 0.33 -1.8
1,466,665 + Echvi_1278 0.33 +0.3
1,466,665 + Echvi_1278 0.33 +0.8
1,466,666 - Echvi_1278 0.33 -2.1
1,466,666 - Echvi_1278 0.33 +0.2
1,466,666 - Echvi_1278 0.33 -0.5
1,466,905 - Echvi_1278 0.53 +0.2
1,466,909 - Echvi_1278 0.54 +0.8
1,466,923 - Echvi_1278 0.55 -0.3
1,466,972 - Echvi_1278 0.59 -1.7
1,467,036 + Echvi_1278 0.65 -0.7
1,467,037 - Echvi_1278 0.65 +0.3
1,467,060 + Echvi_1278 0.67 -0.4
1,467,060 + Echvi_1278 0.67 +0.7
1,467,061 - Echvi_1278 0.67 +0.1
1,467,061 - Echvi_1278 0.67 +3.5
1,467,085 - Echvi_1278 0.69 -1.2
1,467,085 - Echvi_1278 0.69 +0.3
1,467,085 - Echvi_1278 0.69 +1.8
1,467,152 + Echvi_1278 0.75 -1.2
1,467,153 - Echvi_1278 0.75 -2.1
1,467,153 - Echvi_1278 0.75 -0.7
1,467,159 + Echvi_1278 0.75 -1.8
1,467,159 + Echvi_1278 0.75 -0.0
1,467,160 - Echvi_1278 0.75 -0.6
1,467,160 - Echvi_1278 0.75 +0.5
1,467,160 - Echvi_1278 0.75 +0.8
1,467,163 + Echvi_1278 0.75 +0.6
1,467,163 + Echvi_1278 0.75 -1.0
1,467,164 - Echvi_1278 0.76 -0.7
1,467,164 - Echvi_1278 0.76 +1.2
1,467,164 - Echvi_1278 0.76 +0.2
1,467,164 - Echvi_1278 0.76 +1.3
1,467,164 - Echvi_1278 0.76 +0.5

Or see this region's nucleotide sequence