Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0443

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0442 and Echvi_0443 overlap by 26 nucleotidesEchvi_0443 and Echvi_0444 are separated by 33 nucleotides Echvi_0442: Echvi_0442 - Superfamily I DNA and RNA helicases, at 481,687 to 483,507 _0442 Echvi_0443: Echvi_0443 - hypothetical protein, at 483,482 to 483,580 _0443 Echvi_0444: Echvi_0444 - Superfamily II DNA/RNA helicases, SNF2 family, at 483,614 to 487,027 _0444 Position (kb) 483 484Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 482.522 kb on - strand, within Echvi_0442at 482.556 kb on + strand, within Echvi_0442at 482.557 kb on - strand, within Echvi_0442at 482.581 kb on - strand, within Echvi_0442at 482.581 kb on - strand, within Echvi_0442at 482.585 kb on + strand, within Echvi_0442at 482.585 kb on + strand, within Echvi_0442at 482.586 kb on - strand, within Echvi_0442at 482.628 kb on - strand, within Echvi_0442at 482.655 kb on - strand, within Echvi_0442at 482.740 kb on - strand, within Echvi_0442at 482.745 kb on + strand, within Echvi_0442at 482.763 kb on - strand, within Echvi_0442at 482.778 kb on - strand, within Echvi_0442at 482.802 kb on + strand, within Echvi_0442at 482.838 kb on - strand, within Echvi_0442at 482.838 kb on - strand, within Echvi_0442at 482.838 kb on - strand, within Echvi_0442at 482.852 kb on - strand, within Echvi_0442at 482.856 kb on + strand, within Echvi_0442at 482.927 kb on + strand, within Echvi_0442at 482.934 kb on + strand, within Echvi_0442at 482.935 kb on - strand, within Echvi_0442at 482.971 kb on - strand, within Echvi_0442at 482.974 kb on - strand, within Echvi_0442at 482.974 kb on - strand, within Echvi_0442at 482.974 kb on - strand, within Echvi_0442at 482.977 kb on - strand, within Echvi_0442at 482.982 kb on + strand, within Echvi_0442at 483.060 kb on + strand, within Echvi_0442at 483.060 kb on + strand, within Echvi_0442at 483.066 kb on - strandat 483.104 kb on + strand, within Echvi_0442at 483.105 kb on - strand, within Echvi_0442at 483.126 kb on - strand, within Echvi_0442at 483.132 kb on + strand, within Echvi_0442at 483.204 kb on + strand, within Echvi_0442at 483.205 kb on - strand, within Echvi_0442at 483.205 kb on - strand, within Echvi_0442at 483.207 kb on - strand, within Echvi_0442at 483.224 kb on + strand, within Echvi_0442at 483.267 kb on - strand, within Echvi_0442at 483.267 kb on - strand, within Echvi_0442at 483.267 kb on - strand, within Echvi_0442at 483.267 kb on - strand, within Echvi_0442at 483.269 kb on + strand, within Echvi_0442at 483.269 kb on + strand, within Echvi_0442at 483.273 kb on - strand, within Echvi_0442at 483.279 kb on + strand, within Echvi_0442at 483.279 kb on + strand, within Echvi_0442at 483.280 kb on - strand, within Echvi_0442at 483.285 kb on + strand, within Echvi_0442at 483.315 kb on - strand, within Echvi_0442at 483.421 kb on + strandat 483.578 kb on + strandat 483.579 kb on - strandat 483.601 kb on - strandat 483.601 kb on - strandat 483.602 kb on + strandat 483.640 kb on + strandat 483.660 kb on - strandat 483.740 kb on - strandat 483.740 kb on - strandat 483.987 kb on + strandat 483.993 kb on + strand, within Echvi_0444at 483.994 kb on - strand, within Echvi_0444at 484.134 kb on + strand, within Echvi_0444at 484.134 kb on + strand, within Echvi_0444at 484.134 kb on + strand, within Echvi_0444at 484.135 kb on - strand, within Echvi_0444at 484.135 kb on - strand, within Echvi_0444at 484.135 kb on - strand, within Echvi_0444at 484.135 kb on - strand, within Echvi_0444at 484.138 kb on + strand, within Echvi_0444at 484.138 kb on + strand, within Echvi_0444at 484.138 kb on + strand, within Echvi_0444at 484.138 kb on + strand, within Echvi_0444at 484.139 kb on - strand, within Echvi_0444at 484.140 kb on + strand, within Echvi_0444at 484.141 kb on - strand, within Echvi_0444at 484.182 kb on - strand, within Echvi_0444at 484.207 kb on + strand, within Echvi_0444at 484.207 kb on + strand, within Echvi_0444at 484.222 kb on + strand, within Echvi_0444at 484.266 kb on + strand, within Echvi_0444at 484.317 kb on + strand, within Echvi_0444at 484.403 kb on + strand, within Echvi_0444at 484.403 kb on + strand, within Echvi_0444at 484.404 kb on - strand, within Echvi_0444at 484.512 kb on + strand, within Echvi_0444at 484.514 kb on + strand, within Echvi_0444at 484.514 kb on + strand, within Echvi_0444at 484.515 kb on - strand, within Echvi_0444at 484.515 kb on - strand, within Echvi_0444at 484.515 kb on - strand, within Echvi_0444at 484.515 kb on - strand, within Echvi_0444at 484.537 kb on + strand, within Echvi_0444at 484.537 kb on + strand, within Echvi_0444at 484.573 kb on + strand, within Echvi_0444

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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482,522 - Echvi_0442 0.46 -0.2
482,556 + Echvi_0442 0.48 +0.1
482,557 - Echvi_0442 0.48 +0.9
482,581 - Echvi_0442 0.49 -0.0
482,581 - Echvi_0442 0.49 +1.6
482,585 + Echvi_0442 0.49 +0.2
482,585 + Echvi_0442 0.49 -2.8
482,586 - Echvi_0442 0.49 +0.2
482,628 - Echvi_0442 0.52 -0.4
482,655 - Echvi_0442 0.53 +0.3
482,740 - Echvi_0442 0.58 +0.4
482,745 + Echvi_0442 0.58 +0.8
482,763 - Echvi_0442 0.59 -0.3
482,778 - Echvi_0442 0.60 +0.5
482,802 + Echvi_0442 0.61 -1.0
482,838 - Echvi_0442 0.63 +0.0
482,838 - Echvi_0442 0.63 +0.4
482,838 - Echvi_0442 0.63 -1.8
482,852 - Echvi_0442 0.64 -0.2
482,856 + Echvi_0442 0.64 +0.4
482,927 + Echvi_0442 0.68 +0.9
482,934 + Echvi_0442 0.68 -0.1
482,935 - Echvi_0442 0.69 +0.0
482,971 - Echvi_0442 0.71 -0.2
482,974 - Echvi_0442 0.71 -3.0
482,974 - Echvi_0442 0.71 -0.2
482,974 - Echvi_0442 0.71 -0.0
482,977 - Echvi_0442 0.71 +0.2
482,982 + Echvi_0442 0.71 +1.6
483,060 + Echvi_0442 0.75 -2.4
483,060 + Echvi_0442 0.75 +1.6
483,066 - +0.9
483,104 + Echvi_0442 0.78 +1.9
483,105 - Echvi_0442 0.78 +0.2
483,126 - Echvi_0442 0.79 -1.7
483,132 + Echvi_0442 0.79 -1.2
483,204 + Echvi_0442 0.83 -0.0
483,205 - Echvi_0442 0.83 +0.8
483,205 - Echvi_0442 0.83 +0.4
483,207 - Echvi_0442 0.83 -0.6
483,224 + Echvi_0442 0.84 -0.9
483,267 - Echvi_0442 0.87 +0.9
483,267 - Echvi_0442 0.87 +0.7
483,267 - Echvi_0442 0.87 -0.4
483,267 - Echvi_0442 0.87 -1.4
483,269 + Echvi_0442 0.87 -0.6
483,269 + Echvi_0442 0.87 -0.8
483,273 - Echvi_0442 0.87 +0.5
483,279 + Echvi_0442 0.87 -1.9
483,279 + Echvi_0442 0.87 -0.1
483,280 - Echvi_0442 0.87 +1.5
483,285 + Echvi_0442 0.88 +0.5
483,315 - Echvi_0442 0.89 -0.1
483,421 + -2.4
483,578 + -0.3
483,579 - -0.6
483,601 - +0.4
483,601 - -0.3
483,602 + +0.2
483,640 + +0.2
483,660 - +1.9
483,740 - -1.2
483,740 - -0.1
483,987 + +2.9
483,993 + Echvi_0444 0.11 -1.4
483,994 - Echvi_0444 0.11 -0.7
484,134 + Echvi_0444 0.15 -0.6
484,134 + Echvi_0444 0.15 +0.9
484,134 + Echvi_0444 0.15 +1.0
484,135 - Echvi_0444 0.15 +0.5
484,135 - Echvi_0444 0.15 +0.8
484,135 - Echvi_0444 0.15 -1.6
484,135 - Echvi_0444 0.15 -0.8
484,138 + Echvi_0444 0.15 -2.2
484,138 + Echvi_0444 0.15 -0.3
484,138 + Echvi_0444 0.15 -1.2
484,138 + Echvi_0444 0.15 -1.0
484,139 - Echvi_0444 0.15 +0.5
484,140 + Echvi_0444 0.15 +0.9
484,141 - Echvi_0444 0.15 -0.2
484,182 - Echvi_0444 0.17 +0.9
484,207 + Echvi_0444 0.17 +0.8
484,207 + Echvi_0444 0.17 -0.9
484,222 + Echvi_0444 0.18 -0.3
484,266 + Echvi_0444 0.19 +1.9
484,317 + Echvi_0444 0.21 -0.4
484,403 + Echvi_0444 0.23 +0.2
484,403 + Echvi_0444 0.23 -0.8
484,404 - Echvi_0444 0.23 -0.2
484,512 + Echvi_0444 0.26 -0.5
484,514 + Echvi_0444 0.26 +0.7
484,514 + Echvi_0444 0.26 -0.4
484,515 - Echvi_0444 0.26 -0.8
484,515 - Echvi_0444 0.26 -0.7
484,515 - Echvi_0444 0.26 +1.1
484,515 - Echvi_0444 0.26 -1.4
484,537 + Echvi_0444 0.27 +0.1
484,537 + Echvi_0444 0.27 -0.3
484,573 + Echvi_0444 0.28 -0.5

Or see this region's nucleotide sequence