Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21390

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21380 and CA264_21385 are separated by 125 nucleotidesCA264_21385 and CA264_21390 are separated by 1 nucleotidesCA264_21390 and CA264_21395 are separated by 88 nucleotides CA264_21380: CA264_21380 - hypothetical protein, at 139,655 to 140,869 _21380 CA264_21385: CA264_21385 - hypothetical protein, at 140,995 to 141,591 _21385 CA264_21390: CA264_21390 - hypothetical protein, at 141,593 to 142,033 _21390 CA264_21395: CA264_21395 - hypothetical protein, at 142,122 to 142,967 _21395 Position (kb) 141 142 143Strain fitness (log2 ratio) -2 -1 0 1at 140.967 kb on + strandat 140.988 kb on + strandat 140.991 kb on + strandat 140.991 kb on + strandat 140.996 kb on + strandat 140.996 kb on + strandat 141.013 kb on + strandat 141.013 kb on + strandat 141.036 kb on + strandat 141.266 kb on - strand, within CA264_21385at 141.266 kb on - strand, within CA264_21385at 141.266 kb on - strand, within CA264_21385at 141.280 kb on - strand, within CA264_21385at 141.385 kb on - strand, within CA264_21385at 141.406 kb on + strand, within CA264_21385at 141.486 kb on - strand, within CA264_21385at 142.189 kb on + strandat 142.190 kb on - strandat 142.209 kb on + strand, within CA264_21395at 142.250 kb on - strand, within CA264_21395at 142.253 kb on + strand, within CA264_21395at 142.253 kb on + strand, within CA264_21395at 142.254 kb on - strand, within CA264_21395at 142.277 kb on - strand, within CA264_21395at 142.322 kb on + strand, within CA264_21395at 142.381 kb on - strand, within CA264_21395at 142.391 kb on + strand, within CA264_21395at 142.612 kb on + strand, within CA264_21395at 142.717 kb on + strand, within CA264_21395at 142.752 kb on - strand, within CA264_21395at 142.752 kb on - strand, within CA264_21395at 142.777 kb on + strand, within CA264_21395at 142.778 kb on - strand, within CA264_21395at 142.778 kb on - strand, within CA264_21395at 142.782 kb on + strand, within CA264_21395at 142.782 kb on + strand, within CA264_21395at 142.789 kb on + strand, within CA264_21395at 142.852 kb on + strand, within CA264_21395at 142.852 kb on + strand, within CA264_21395at 142.853 kb on - strand, within CA264_21395at 142.937 kb on - strandat 142.957 kb on - strandat 142.959 kb on + strandat 142.972 kb on + strandat 142.976 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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140,967 + -1.4
140,988 + -0.0
140,991 + +0.8
140,991 + -1.5
140,996 + +1.2
140,996 + -1.4
141,013 + +0.8
141,013 + -1.2
141,036 + +0.1
141,266 - CA264_21385 0.45 -0.7
141,266 - CA264_21385 0.45 +0.1
141,266 - CA264_21385 0.45 -0.3
141,280 - CA264_21385 0.48 -0.2
141,385 - CA264_21385 0.65 -0.1
141,406 + CA264_21385 0.69 +0.8
141,486 - CA264_21385 0.82 -1.1
142,189 + -0.2
142,190 - -0.0
142,209 + CA264_21395 0.10 -2.7
142,250 - CA264_21395 0.15 -1.4
142,253 + CA264_21395 0.15 -1.2
142,253 + CA264_21395 0.15 -0.1
142,254 - CA264_21395 0.16 +0.3
142,277 - CA264_21395 0.18 -0.1
142,322 + CA264_21395 0.24 -1.6
142,381 - CA264_21395 0.31 +0.0
142,391 + CA264_21395 0.32 -1.6
142,612 + CA264_21395 0.58 -1.2
142,717 + CA264_21395 0.70 -2.1
142,752 - CA264_21395 0.74 -1.1
142,752 - CA264_21395 0.74 -0.6
142,777 + CA264_21395 0.77 -1.1
142,778 - CA264_21395 0.78 -0.7
142,778 - CA264_21395 0.78 -0.7
142,782 + CA264_21395 0.78 -0.8
142,782 + CA264_21395 0.78 -1.6
142,789 + CA264_21395 0.79 -1.6
142,852 + CA264_21395 0.86 -0.8
142,852 + CA264_21395 0.86 -1.8
142,853 - CA264_21395 0.86 +0.3
142,937 - -0.1
142,957 - -0.8
142,959 + -0.9
142,972 + -1.2
142,976 - -0.4

Or see this region's nucleotide sequence