Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21375

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21370 and CA264_21375 are separated by 94 nucleotidesCA264_21375 and CA264_21380 are separated by 11 nucleotides CA264_21370: CA264_21370 - hypothetical protein, at 138,206 to 139,042 _21370 CA264_21375: CA264_21375 - hypothetical protein, at 139,137 to 139,643 _21375 CA264_21380: CA264_21380 - hypothetical protein, at 139,655 to 140,869 _21380 Position (kb) 139 140Strain fitness (log2 ratio) -2 -1 0 1 2at 138.200 kb on + strandat 138.201 kb on - strandat 138.201 kb on - strandat 138.201 kb on - strandat 138.220 kb on + strandat 138.237 kb on - strandat 138.268 kb on - strandat 138.273 kb on + strandat 138.281 kb on - strandat 138.281 kb on - strandat 138.311 kb on - strand, within CA264_21370at 138.349 kb on + strand, within CA264_21370at 138.350 kb on - strand, within CA264_21370at 138.351 kb on + strand, within CA264_21370at 138.355 kb on + strand, within CA264_21370at 138.356 kb on - strand, within CA264_21370at 138.396 kb on - strand, within CA264_21370at 138.410 kb on + strand, within CA264_21370at 138.410 kb on + strand, within CA264_21370at 138.411 kb on - strand, within CA264_21370at 138.411 kb on - strand, within CA264_21370at 138.411 kb on - strand, within CA264_21370at 138.411 kb on - strand, within CA264_21370at 138.412 kb on + strand, within CA264_21370at 138.505 kb on - strand, within CA264_21370at 138.602 kb on + strand, within CA264_21370at 138.604 kb on + strand, within CA264_21370at 138.604 kb on + strand, within CA264_21370at 138.607 kb on + strand, within CA264_21370at 138.644 kb on + strand, within CA264_21370at 138.698 kb on + strand, within CA264_21370at 138.704 kb on - strand, within CA264_21370at 138.716 kb on + strand, within CA264_21370at 138.757 kb on - strand, within CA264_21370at 138.815 kb on + strand, within CA264_21370at 138.815 kb on + strand, within CA264_21370at 138.816 kb on - strand, within CA264_21370at 138.903 kb on + strand, within CA264_21370at 138.915 kb on + strand, within CA264_21370at 138.935 kb on + strand, within CA264_21370at 138.935 kb on + strand, within CA264_21370at 138.935 kb on + strand, within CA264_21370at 138.936 kb on - strand, within CA264_21370at 138.936 kb on - strand, within CA264_21370at 138.938 kb on - strand, within CA264_21370at 138.939 kb on + strand, within CA264_21370at 138.939 kb on + strand, within CA264_21370at 138.940 kb on - strand, within CA264_21370at 138.940 kb on - strand, within CA264_21370at 138.940 kb on - strand, within CA264_21370at 138.940 kb on - strand, within CA264_21370at 138.940 kb on - strand, within CA264_21370at 138.940 kb on - strand, within CA264_21370at 138.960 kb on - strandat 138.981 kb on + strandat 139.041 kb on - strandat 139.065 kb on - strandat 139.099 kb on - strandat 139.104 kb on - strandat 139.125 kb on + strandat 139.126 kb on - strandat 139.126 kb on - strandat 139.151 kb on + strandat 139.152 kb on - strandat 139.152 kb on - strandat 139.171 kb on + strandat 139.171 kb on + strandat 139.210 kb on - strand, within CA264_21375at 139.215 kb on + strand, within CA264_21375at 139.215 kb on + strand, within CA264_21375at 139.216 kb on - strand, within CA264_21375at 139.216 kb on - strand, within CA264_21375at 139.236 kb on - strand, within CA264_21375at 139.240 kb on - strand, within CA264_21375at 139.285 kb on + strand, within CA264_21375at 139.288 kb on + strand, within CA264_21375at 139.288 kb on + strand, within CA264_21375at 139.335 kb on + strand, within CA264_21375at 139.336 kb on - strand, within CA264_21375at 139.338 kb on - strand, within CA264_21375at 139.338 kb on - strand, within CA264_21375at 139.357 kb on - strand, within CA264_21375at 139.384 kb on + strand, within CA264_21375at 139.385 kb on - strand, within CA264_21375at 139.393 kb on - strand, within CA264_21375at 139.424 kb on + strand, within CA264_21375at 139.448 kb on + strand, within CA264_21375at 139.449 kb on - strand, within CA264_21375at 139.484 kb on + strand, within CA264_21375at 139.500 kb on + strand, within CA264_21375at 139.501 kb on - strand, within CA264_21375at 139.501 kb on - strand, within CA264_21375at 139.501 kb on - strand, within CA264_21375at 139.576 kb on - strand, within CA264_21375at 139.635 kb on - strandat 139.818 kb on + strand, within CA264_21380at 139.820 kb on + strand, within CA264_21380at 139.822 kb on + strand, within CA264_21380at 139.880 kb on + strand, within CA264_21380at 140.062 kb on + strand, within CA264_21380at 140.210 kb on + strand, within CA264_21380at 140.314 kb on + strand, within CA264_21380at 140.314 kb on + strand, within CA264_21380at 140.418 kb on + strand, within CA264_21380

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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138,200 + +0.0
138,201 - +0.1
138,201 - -0.3
138,201 - -0.1
138,220 + -0.2
138,237 - +0.1
138,268 - -0.4
138,273 + +0.2
138,281 - -0.1
138,281 - -0.2
138,311 - CA264_21370 0.13 -0.3
138,349 + CA264_21370 0.17 +0.0
138,350 - CA264_21370 0.17 +0.2
138,351 + CA264_21370 0.17 +0.3
138,355 + CA264_21370 0.18 -0.0
138,356 - CA264_21370 0.18 +0.9
138,396 - CA264_21370 0.23 -0.0
138,410 + CA264_21370 0.24 -1.0
138,410 + CA264_21370 0.24 +0.1
138,411 - CA264_21370 0.24 -0.6
138,411 - CA264_21370 0.24 -0.5
138,411 - CA264_21370 0.24 -0.1
138,411 - CA264_21370 0.24 +0.4
138,412 + CA264_21370 0.25 -2.0
138,505 - CA264_21370 0.36 +1.5
138,602 + CA264_21370 0.47 +0.1
138,604 + CA264_21370 0.48 +0.2
138,604 + CA264_21370 0.48 -0.7
138,607 + CA264_21370 0.48 -0.1
138,644 + CA264_21370 0.52 -0.1
138,698 + CA264_21370 0.59 -0.2
138,704 - CA264_21370 0.59 +0.0
138,716 + CA264_21370 0.61 +0.2
138,757 - CA264_21370 0.66 -0.1
138,815 + CA264_21370 0.73 +0.1
138,815 + CA264_21370 0.73 -1.1
138,816 - CA264_21370 0.73 -0.5
138,903 + CA264_21370 0.83 -0.3
138,915 + CA264_21370 0.85 +0.5
138,935 + CA264_21370 0.87 +0.4
138,935 + CA264_21370 0.87 +0.1
138,935 + CA264_21370 0.87 -0.5
138,936 - CA264_21370 0.87 -0.4
138,936 - CA264_21370 0.87 -0.1
138,938 - CA264_21370 0.87 +1.1
138,939 + CA264_21370 0.88 +0.1
138,939 + CA264_21370 0.88 +0.4
138,940 - CA264_21370 0.88 -0.7
138,940 - CA264_21370 0.88 -0.2
138,940 - CA264_21370 0.88 +0.4
138,940 - CA264_21370 0.88 -0.1
138,940 - CA264_21370 0.88 -0.4
138,940 - CA264_21370 0.88 +1.1
138,960 - +0.4
138,981 + -0.4
139,041 - -0.9
139,065 - +0.5
139,099 - -0.5
139,104 - -0.4
139,125 + -0.2
139,126 - -0.1
139,126 - +1.8
139,151 + -0.2
139,152 - +0.1
139,152 - +0.2
139,171 + +0.4
139,171 + -2.0
139,210 - CA264_21375 0.14 -0.5
139,215 + CA264_21375 0.15 -0.1
139,215 + CA264_21375 0.15 -0.1
139,216 - CA264_21375 0.16 +0.5
139,216 - CA264_21375 0.16 -1.2
139,236 - CA264_21375 0.20 -2.4
139,240 - CA264_21375 0.20 -0.1
139,285 + CA264_21375 0.29 +0.2
139,288 + CA264_21375 0.30 +0.4
139,288 + CA264_21375 0.30 -0.3
139,335 + CA264_21375 0.39 -0.5
139,336 - CA264_21375 0.39 -0.8
139,338 - CA264_21375 0.40 -0.3
139,338 - CA264_21375 0.40 -0.5
139,357 - CA264_21375 0.43 -2.3
139,384 + CA264_21375 0.49 -0.0
139,385 - CA264_21375 0.49 -1.0
139,393 - CA264_21375 0.50 +0.4
139,424 + CA264_21375 0.57 +0.9
139,448 + CA264_21375 0.61 +1.3
139,449 - CA264_21375 0.62 -0.5
139,484 + CA264_21375 0.68 -1.0
139,500 + CA264_21375 0.72 +1.4
139,501 - CA264_21375 0.72 -0.8
139,501 - CA264_21375 0.72 +0.0
139,501 - CA264_21375 0.72 -0.3
139,576 - CA264_21375 0.87 -0.2
139,635 - -0.4
139,818 + CA264_21380 0.13 -0.7
139,820 + CA264_21380 0.14 -1.7
139,822 + CA264_21380 0.14 -1.2
139,880 + CA264_21380 0.19 +0.3
140,062 + CA264_21380 0.33 +0.7
140,210 + CA264_21380 0.46 -0.3
140,314 + CA264_21380 0.54 -1.1
140,314 + CA264_21380 0.54 +0.5
140,418 + CA264_21380 0.63 +0.2

Or see this region's nucleotide sequence