Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18770

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18765 and CA264_18770 are separated by 167 nucleotidesCA264_18770 and CA264_18775 are separated by 312 nucleotidesCA264_18775 and CA264_18780 are separated by 297 nucleotides CA264_18765: CA264_18765 - ATPase, at 4,358,582 to 4,359,541 _18765 CA264_18770: CA264_18770 - hypothetical protein, at 4,359,709 to 4,360,143 _18770 CA264_18775: CA264_18775 - hypothetical protein, at 4,360,456 to 4,360,845 _18775 CA264_18780: CA264_18780 - hypothetical protein, at 4,361,143 to 4,362,252 _18780 Position (kb) 4359 4360 4361Strain fitness (log2 ratio) -2 -1 0 1 2at 4358.721 kb on + strand, within CA264_18765at 4358.721 kb on + strand, within CA264_18765at 4358.721 kb on + strand, within CA264_18765at 4358.740 kb on - strand, within CA264_18765at 4358.771 kb on + strand, within CA264_18765at 4358.773 kb on + strand, within CA264_18765at 4358.773 kb on + strand, within CA264_18765at 4358.773 kb on + strand, within CA264_18765at 4358.774 kb on - strand, within CA264_18765at 4358.774 kb on - strand, within CA264_18765at 4358.774 kb on - strand, within CA264_18765at 4358.806 kb on - strand, within CA264_18765at 4358.806 kb on - strand, within CA264_18765at 4358.806 kb on - strand, within CA264_18765at 4358.806 kb on - strand, within CA264_18765at 4358.864 kb on + strand, within CA264_18765at 4358.865 kb on - strand, within CA264_18765at 4358.866 kb on + strand, within CA264_18765at 4358.866 kb on + strand, within CA264_18765at 4358.867 kb on - strand, within CA264_18765at 4358.867 kb on - strand, within CA264_18765at 4358.869 kb on + strand, within CA264_18765at 4358.869 kb on + strand, within CA264_18765at 4358.870 kb on - strand, within CA264_18765at 4358.870 kb on - strand, within CA264_18765at 4358.871 kb on + strand, within CA264_18765at 4358.871 kb on + strand, within CA264_18765at 4358.872 kb on - strand, within CA264_18765at 4359.030 kb on + strand, within CA264_18765at 4359.030 kb on + strand, within CA264_18765at 4359.031 kb on - strand, within CA264_18765at 4359.044 kb on - strand, within CA264_18765at 4359.138 kb on + strand, within CA264_18765at 4359.139 kb on - strand, within CA264_18765at 4359.139 kb on - strand, within CA264_18765at 4359.233 kb on + strand, within CA264_18765at 4359.292 kb on - strand, within CA264_18765at 4359.292 kb on - strand, within CA264_18765at 4359.292 kb on - strand, within CA264_18765at 4359.292 kb on - strand, within CA264_18765at 4359.471 kb on + strandat 4359.472 kb on - strandat 4359.497 kb on + strandat 4359.506 kb on - strandat 4359.506 kb on - strandat 4359.509 kb on + strandat 4359.510 kb on - strandat 4359.531 kb on + strandat 4359.604 kb on + strandat 4359.605 kb on - strandat 4359.612 kb on + strandat 4359.612 kb on + strandat 4359.612 kb on + strandat 4359.613 kb on - strandat 4359.613 kb on - strandat 4359.615 kb on + strandat 4359.615 kb on + strandat 4359.623 kb on + strandat 4359.652 kb on + strandat 4360.015 kb on + strand, within CA264_18770at 4360.030 kb on - strand, within CA264_18770at 4360.127 kb on - strandat 4360.183 kb on + strandat 4360.184 kb on - strandat 4360.187 kb on - strandat 4360.226 kb on + strandat 4360.226 kb on + strandat 4360.244 kb on + strandat 4360.275 kb on + strandat 4360.318 kb on - strandat 4360.469 kb on + strandat 4360.469 kb on + strandat 4360.539 kb on - strand, within CA264_18775at 4360.703 kb on + strand, within CA264_18775at 4360.814 kb on - strandat 4360.866 kb on + strandat 4360.981 kb on + strandat 4360.982 kb on - strandat 4360.982 kb on - strandat 4360.982 kb on - strandat 4360.985 kb on + strandat 4360.985 kb on + strandat 4361.001 kb on + strandat 4361.022 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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4,358,721 + CA264_18765 0.14 +0.0
4,358,721 + CA264_18765 0.14 +0.1
4,358,721 + CA264_18765 0.14 -0.3
4,358,740 - CA264_18765 0.16 -1.0
4,358,771 + CA264_18765 0.20 +0.5
4,358,773 + CA264_18765 0.20 -0.6
4,358,773 + CA264_18765 0.20 -1.1
4,358,773 + CA264_18765 0.20 -0.3
4,358,774 - CA264_18765 0.20 -0.7
4,358,774 - CA264_18765 0.20 +0.4
4,358,774 - CA264_18765 0.20 +0.6
4,358,806 - CA264_18765 0.23 +0.6
4,358,806 - CA264_18765 0.23 +1.2
4,358,806 - CA264_18765 0.23 +0.3
4,358,806 - CA264_18765 0.23 -0.4
4,358,864 + CA264_18765 0.29 +0.0
4,358,865 - CA264_18765 0.29 -2.1
4,358,866 + CA264_18765 0.30 -1.7
4,358,866 + CA264_18765 0.30 +0.2
4,358,867 - CA264_18765 0.30 -0.9
4,358,867 - CA264_18765 0.30 +0.2
4,358,869 + CA264_18765 0.30 -0.5
4,358,869 + CA264_18765 0.30 -1.7
4,358,870 - CA264_18765 0.30 +0.2
4,358,870 - CA264_18765 0.30 -0.2
4,358,871 + CA264_18765 0.30 +0.1
4,358,871 + CA264_18765 0.30 -0.0
4,358,872 - CA264_18765 0.30 -0.6
4,359,030 + CA264_18765 0.47 +0.0
4,359,030 + CA264_18765 0.47 -0.3
4,359,031 - CA264_18765 0.47 +1.9
4,359,044 - CA264_18765 0.48 -0.4
4,359,138 + CA264_18765 0.58 -1.9
4,359,139 - CA264_18765 0.58 -0.8
4,359,139 - CA264_18765 0.58 -0.4
4,359,233 + CA264_18765 0.68 +0.4
4,359,292 - CA264_18765 0.74 -1.0
4,359,292 - CA264_18765 0.74 -0.4
4,359,292 - CA264_18765 0.74 -1.1
4,359,292 - CA264_18765 0.74 -0.1
4,359,471 + -0.5
4,359,472 - -0.7
4,359,497 + -1.0
4,359,506 - -0.7
4,359,506 - -1.0
4,359,509 + +1.0
4,359,510 - +0.3
4,359,531 + -1.2
4,359,604 + -0.6
4,359,605 - -1.3
4,359,612 + -2.0
4,359,612 + -0.5
4,359,612 + +0.2
4,359,613 - +0.1
4,359,613 - +0.4
4,359,615 + -0.5
4,359,615 + -0.5
4,359,623 + -0.6
4,359,652 + +1.4
4,360,015 + CA264_18770 0.70 -0.7
4,360,030 - CA264_18770 0.74 -1.6
4,360,127 - +1.1
4,360,183 + -0.9
4,360,184 - +0.1
4,360,187 - -0.8
4,360,226 + -0.6
4,360,226 + -0.1
4,360,244 + +0.1
4,360,275 + +0.8
4,360,318 - +0.2
4,360,469 + -1.6
4,360,469 + -0.8
4,360,539 - CA264_18775 0.21 +0.9
4,360,703 + CA264_18775 0.63 -1.4
4,360,814 - -0.1
4,360,866 + -1.4
4,360,981 + +0.0
4,360,982 - -0.5
4,360,982 - -0.3
4,360,982 - -0.2
4,360,985 + -1.9
4,360,985 + -2.2
4,361,001 + -0.7
4,361,022 + -0.5

Or see this region's nucleotide sequence