Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17350

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_17345 and CA264_17350 are separated by 67 nucleotidesCA264_17350 and CA264_17355 are separated by 349 nucleotides CA264_17345: CA264_17345 - ABC transporter ATP-binding protein, at 4,042,486 to 4,044,300 _17345 CA264_17350: CA264_17350 - hypothetical protein, at 4,044,368 to 4,045,135 _17350 CA264_17355: CA264_17355 - ribonuclease R, at 4,045,485 to 4,047,767 _17355 Position (kb) 4044 4045 4046Strain fitness (log2 ratio) -2 -1 0 1 2at 4043.445 kb on + strand, within CA264_17345at 4043.445 kb on + strand, within CA264_17345at 4043.488 kb on + strand, within CA264_17345at 4043.565 kb on - strand, within CA264_17345at 4044.009 kb on - strand, within CA264_17345at 4044.203 kb on - strandat 4044.216 kb on + strandat 4044.218 kb on + strandat 4044.218 kb on + strandat 4044.219 kb on - strandat 4044.250 kb on - strandat 4044.252 kb on - strandat 4044.299 kb on - strandat 4044.367 kb on + strandat 4044.368 kb on - strandat 4044.383 kb on + strandat 4044.383 kb on + strandat 4044.383 kb on + strandat 4044.417 kb on + strandat 4044.417 kb on + strandat 4044.417 kb on + strandat 4044.418 kb on - strandat 4044.418 kb on - strandat 4044.418 kb on - strandat 4044.418 kb on - strandat 4044.436 kb on + strandat 4044.444 kb on + strandat 4044.465 kb on + strand, within CA264_17350at 4044.466 kb on - strand, within CA264_17350at 4044.574 kb on - strand, within CA264_17350at 4044.574 kb on - strand, within CA264_17350at 4044.574 kb on - strand, within CA264_17350at 4044.620 kb on + strand, within CA264_17350at 4044.621 kb on - strand, within CA264_17350at 4044.660 kb on - strand, within CA264_17350at 4044.692 kb on - strand, within CA264_17350at 4044.735 kb on - strand, within CA264_17350at 4044.779 kb on - strand, within CA264_17350at 4044.926 kb on + strand, within CA264_17350at 4044.926 kb on + strand, within CA264_17350at 4044.926 kb on + strand, within CA264_17350at 4044.996 kb on - strand, within CA264_17350at 4045.014 kb on + strand, within CA264_17350at 4045.015 kb on - strand, within CA264_17350at 4045.015 kb on - strand, within CA264_17350at 4045.032 kb on + strand, within CA264_17350at 4045.033 kb on - strand, within CA264_17350at 4045.033 kb on - strand, within CA264_17350at 4045.045 kb on + strand, within CA264_17350at 4045.046 kb on - strand, within CA264_17350at 4045.046 kb on - strand, within CA264_17350at 4045.046 kb on - strand, within CA264_17350at 4045.046 kb on - strand, within CA264_17350at 4045.046 kb on - strand, within CA264_17350at 4045.046 kb on - strand, within CA264_17350at 4045.048 kb on - strand, within CA264_17350at 4045.133 kb on + strandat 4045.134 kb on - strandat 4045.134 kb on - strandat 4045.257 kb on - strandat 4045.257 kb on - strandat 4045.320 kb on + strandat 4045.331 kb on - strandat 4045.331 kb on - strandat 4045.334 kb on + strandat 4045.399 kb on + strandat 4045.399 kb on + strandat 4045.400 kb on - strandat 4045.401 kb on + strandat 4045.401 kb on + strandat 4045.402 kb on - strandat 4045.402 kb on - strandat 4045.404 kb on + strandat 4045.404 kb on + strandat 4045.408 kb on + strandat 4045.423 kb on - strandat 4045.494 kb on - strandat 4045.494 kb on - strandat 4045.837 kb on - strand, within CA264_17355at 4045.837 kb on - strand, within CA264_17355at 4045.903 kb on - strand, within CA264_17355at 4045.904 kb on + strand, within CA264_17355at 4045.904 kb on + strand, within CA264_17355at 4045.910 kb on - strand, within CA264_17355at 4046.036 kb on - strand, within CA264_17355

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
remove
4,043,445 + CA264_17345 0.53 +0.6
4,043,445 + CA264_17345 0.53 -0.3
4,043,488 + CA264_17345 0.55 -0.7
4,043,565 - CA264_17345 0.59 +0.3
4,044,009 - CA264_17345 0.84 -0.0
4,044,203 - +0.4
4,044,216 + -0.7
4,044,218 + +0.0
4,044,218 + -0.3
4,044,219 - +0.3
4,044,250 - +0.2
4,044,252 - -1.3
4,044,299 - +0.6
4,044,367 + +0.5
4,044,368 - +0.3
4,044,383 + -0.9
4,044,383 + +0.4
4,044,383 + -0.6
4,044,417 + -0.4
4,044,417 + +0.1
4,044,417 + -0.4
4,044,418 - -0.2
4,044,418 - -1.0
4,044,418 - +0.8
4,044,418 - -0.1
4,044,436 + +0.0
4,044,444 + -0.8
4,044,465 + CA264_17350 0.13 -0.5
4,044,466 - CA264_17350 0.13 -0.5
4,044,574 - CA264_17350 0.27 -0.5
4,044,574 - CA264_17350 0.27 +0.4
4,044,574 - CA264_17350 0.27 -0.0
4,044,620 + CA264_17350 0.33 +0.3
4,044,621 - CA264_17350 0.33 +0.3
4,044,660 - CA264_17350 0.38 -2.2
4,044,692 - CA264_17350 0.42 -0.6
4,044,735 - CA264_17350 0.48 +2.7
4,044,779 - CA264_17350 0.54 -0.5
4,044,926 + CA264_17350 0.73 -0.4
4,044,926 + CA264_17350 0.73 -0.3
4,044,926 + CA264_17350 0.73 +0.6
4,044,996 - CA264_17350 0.82 +0.5
4,045,014 + CA264_17350 0.84 +0.6
4,045,015 - CA264_17350 0.84 -1.4
4,045,015 - CA264_17350 0.84 +1.7
4,045,032 + CA264_17350 0.86 +0.3
4,045,033 - CA264_17350 0.87 -0.4
4,045,033 - CA264_17350 0.87 +0.2
4,045,045 + CA264_17350 0.88 +0.3
4,045,046 - CA264_17350 0.88 +1.4
4,045,046 - CA264_17350 0.88 -0.6
4,045,046 - CA264_17350 0.88 -0.7
4,045,046 - CA264_17350 0.88 +0.1
4,045,046 - CA264_17350 0.88 -0.1
4,045,046 - CA264_17350 0.88 +0.5
4,045,048 - CA264_17350 0.89 -0.4
4,045,133 + +0.3
4,045,134 - +0.1
4,045,134 - -0.7
4,045,257 - +0.5
4,045,257 - +0.7
4,045,320 + +0.1
4,045,331 - -0.8
4,045,331 - -0.1
4,045,334 + -0.1
4,045,399 + +0.3
4,045,399 + +0.1
4,045,400 - +0.0
4,045,401 + -0.2
4,045,401 + +0.6
4,045,402 - +0.0
4,045,402 - +0.3
4,045,404 + +0.6
4,045,404 + +0.1
4,045,408 + +0.0
4,045,423 - -1.1
4,045,494 - +2.0
4,045,494 - -2.6
4,045,837 - CA264_17355 0.15 -0.3
4,045,837 - CA264_17355 0.15 -0.2
4,045,903 - CA264_17355 0.18 -1.9
4,045,904 + CA264_17355 0.18 -0.9
4,045,904 + CA264_17355 0.18 -2.6
4,045,910 - CA264_17355 0.19 -1.8
4,046,036 - CA264_17355 0.24 -1.1

Or see this region's nucleotide sequence