Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16780

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_16775 and CA264_16780 are separated by 64 nucleotidesCA264_16780 and CA264_16785 are separated by 135 nucleotides CA264_16775: CA264_16775 - metal-dependent hydrolase, at 3,911,346 to 3,912,116 _16775 CA264_16780: CA264_16780 - methylenetetrahydrofolate reductase [NAD(P)H], at 3,912,181 to 3,913,137 _16780 CA264_16785: CA264_16785 - methionine synthase, at 3,913,273 to 3,916,986 _16785 Position (kb) 3912 3913 3914Strain fitness (log2 ratio) -2 -1 0 1 2at 3911.189 kb on - strandat 3911.189 kb on - strandat 3911.316 kb on + strandat 3911.317 kb on - strandat 3911.320 kb on + strandat 3911.321 kb on - strandat 3911.321 kb on - strandat 3911.321 kb on - strandat 3911.323 kb on - strandat 3911.357 kb on + strandat 3911.361 kb on - strandat 3911.364 kb on + strandat 3911.380 kb on - strandat 3911.388 kb on - strandat 3911.472 kb on + strand, within CA264_16775at 3911.532 kb on + strand, within CA264_16775at 3911.532 kb on + strand, within CA264_16775at 3911.533 kb on - strand, within CA264_16775at 3911.533 kb on - strand, within CA264_16775at 3911.617 kb on + strand, within CA264_16775at 3911.617 kb on + strand, within CA264_16775at 3911.618 kb on - strand, within CA264_16775at 3911.621 kb on + strand, within CA264_16775at 3911.622 kb on - strand, within CA264_16775at 3911.622 kb on - strand, within CA264_16775at 3911.622 kb on - strand, within CA264_16775at 3911.771 kb on + strand, within CA264_16775at 3911.800 kb on - strand, within CA264_16775at 3911.844 kb on + strand, within CA264_16775at 3911.845 kb on - strand, within CA264_16775at 3911.893 kb on + strand, within CA264_16775at 3911.977 kb on + strand, within CA264_16775at 3911.991 kb on + strand, within CA264_16775at 3911.992 kb on - strand, within CA264_16775at 3912.120 kb on - strandat 3912.140 kb on + strandat 3912.141 kb on - strandat 3912.141 kb on - strandat 3912.161 kb on + strandat 3912.162 kb on - strandat 3912.162 kb on - strandat 3912.162 kb on - strandat 3912.169 kb on + strandat 3912.182 kb on + strandat 3912.233 kb on + strandat 3912.237 kb on - strandat 3912.394 kb on + strand, within CA264_16780at 3912.394 kb on + strand, within CA264_16780at 3912.394 kb on + strand, within CA264_16780at 3912.395 kb on - strandat 3912.482 kb on + strand, within CA264_16780at 3912.482 kb on + strand, within CA264_16780at 3912.511 kb on + strand, within CA264_16780at 3912.512 kb on - strand, within CA264_16780at 3912.660 kb on - strand, within CA264_16780at 3912.708 kb on - strand, within CA264_16780at 3912.711 kb on + strand, within CA264_16780at 3912.711 kb on + strand, within CA264_16780at 3912.712 kb on - strand, within CA264_16780at 3912.780 kb on + strand, within CA264_16780at 3912.780 kb on + strand, within CA264_16780at 3912.781 kb on - strand, within CA264_16780at 3912.781 kb on - strand, within CA264_16780at 3912.784 kb on + strand, within CA264_16780at 3912.873 kb on + strand, within CA264_16780at 3912.873 kb on + strand, within CA264_16780at 3912.874 kb on - strand, within CA264_16780at 3912.874 kb on - strand, within CA264_16780at 3912.874 kb on - strand, within CA264_16780at 3912.875 kb on + strand, within CA264_16780at 3912.875 kb on + strand, within CA264_16780at 3912.876 kb on - strand, within CA264_16780at 3912.876 kb on - strand, within CA264_16780at 3912.927 kb on + strand, within CA264_16780at 3912.965 kb on + strand, within CA264_16780at 3912.966 kb on - strand, within CA264_16780at 3912.966 kb on - strand, within CA264_16780at 3913.030 kb on + strand, within CA264_16780at 3913.031 kb on - strand, within CA264_16780at 3913.032 kb on + strand, within CA264_16780at 3913.079 kb on - strandat 3913.089 kb on + strandat 3913.090 kb on - strandat 3913.158 kb on + strandat 3913.161 kb on - strandat 3913.161 kb on - strandat 3913.167 kb on + strandat 3913.168 kb on - strandat 3913.168 kb on - strandat 3913.168 kb on - strandat 3913.168 kb on - strandat 3913.168 kb on - strandat 3913.181 kb on + strandat 3913.182 kb on - strandat 3913.222 kb on + strandat 3913.223 kb on - strandat 3913.231 kb on + strandat 3913.241 kb on - strandat 3913.268 kb on + strandat 3913.269 kb on - strandat 3913.275 kb on - strandat 3913.275 kb on - strandat 3913.308 kb on - strandat 3913.412 kb on + strandat 3913.413 kb on - strandat 3913.436 kb on + strandat 3913.483 kb on - strandat 3913.486 kb on + strandat 3913.489 kb on - strandat 3913.543 kb on - strandat 3913.698 kb on + strand, within CA264_16785at 3913.752 kb on - strand, within CA264_16785at 3913.807 kb on - strand, within CA264_16785at 3913.808 kb on + strand, within CA264_16785at 3913.808 kb on + strand, within CA264_16785at 3913.809 kb on - strand, within CA264_16785at 3913.943 kb on - strand, within CA264_16785at 3914.021 kb on - strand, within CA264_16785

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
remove
3,911,189 - +0.0
3,911,189 - +0.7
3,911,316 + -0.7
3,911,317 - +1.2
3,911,320 + +0.6
3,911,321 - -0.5
3,911,321 - +0.5
3,911,321 - -0.3
3,911,323 - +0.3
3,911,357 + -0.2
3,911,361 - +0.7
3,911,364 + -0.6
3,911,380 - -0.4
3,911,388 - +0.1
3,911,472 + CA264_16775 0.16 -0.3
3,911,532 + CA264_16775 0.24 -0.1
3,911,532 + CA264_16775 0.24 +0.8
3,911,533 - CA264_16775 0.24 +0.7
3,911,533 - CA264_16775 0.24 -0.0
3,911,617 + CA264_16775 0.35 -0.4
3,911,617 + CA264_16775 0.35 -0.1
3,911,618 - CA264_16775 0.35 -1.0
3,911,621 + CA264_16775 0.36 -0.5
3,911,622 - CA264_16775 0.36 +1.2
3,911,622 - CA264_16775 0.36 -0.1
3,911,622 - CA264_16775 0.36 -1.2
3,911,771 + CA264_16775 0.55 +0.5
3,911,800 - CA264_16775 0.59 -0.1
3,911,844 + CA264_16775 0.65 +1.5
3,911,845 - CA264_16775 0.65 -0.4
3,911,893 + CA264_16775 0.71 +0.1
3,911,977 + CA264_16775 0.82 +0.9
3,911,991 + CA264_16775 0.84 -0.3
3,911,992 - CA264_16775 0.84 +0.0
3,912,120 - -2.1
3,912,140 + +0.7
3,912,141 - +0.3
3,912,141 - +1.7
3,912,161 + +0.3
3,912,162 - -1.1
3,912,162 - -0.3
3,912,162 - -0.5
3,912,169 + -0.6
3,912,182 + -0.3
3,912,233 + -0.1
3,912,237 - -0.2
3,912,394 + CA264_16780 0.22 +0.1
3,912,394 + CA264_16780 0.22 +0.1
3,912,394 + CA264_16780 0.22 -0.3
3,912,395 - +0.3
3,912,482 + CA264_16780 0.31 +0.2
3,912,482 + CA264_16780 0.31 +0.3
3,912,511 + CA264_16780 0.34 -0.7
3,912,512 - CA264_16780 0.35 +0.5
3,912,660 - CA264_16780 0.50 +0.4
3,912,708 - CA264_16780 0.55 -0.4
3,912,711 + CA264_16780 0.55 -1.0
3,912,711 + CA264_16780 0.55 +2.0
3,912,712 - CA264_16780 0.55 -0.5
3,912,780 + CA264_16780 0.63 -0.9
3,912,780 + CA264_16780 0.63 -0.0
3,912,781 - CA264_16780 0.63 -0.7
3,912,781 - CA264_16780 0.63 +0.3
3,912,784 + CA264_16780 0.63 +0.2
3,912,873 + CA264_16780 0.72 +0.3
3,912,873 + CA264_16780 0.72 -0.4
3,912,874 - CA264_16780 0.72 -0.0
3,912,874 - CA264_16780 0.72 +0.0
3,912,874 - CA264_16780 0.72 +0.7
3,912,875 + CA264_16780 0.73 +0.6
3,912,875 + CA264_16780 0.73 -0.1
3,912,876 - CA264_16780 0.73 +0.5
3,912,876 - CA264_16780 0.73 +0.0
3,912,927 + CA264_16780 0.78 -0.4
3,912,965 + CA264_16780 0.82 +0.4
3,912,966 - CA264_16780 0.82 -0.5
3,912,966 - CA264_16780 0.82 +0.7
3,913,030 + CA264_16780 0.89 -0.3
3,913,031 - CA264_16780 0.89 -1.5
3,913,032 + CA264_16780 0.89 +0.9
3,913,079 - +0.2
3,913,089 + +0.4
3,913,090 - +0.3
3,913,158 + -0.3
3,913,161 - -0.7
3,913,161 - +0.0
3,913,167 + -0.3
3,913,168 - -0.7
3,913,168 - -0.9
3,913,168 - -1.9
3,913,168 - -1.0
3,913,168 - +0.4
3,913,181 + +0.2
3,913,182 - -0.5
3,913,222 + -0.7
3,913,223 - -1.1
3,913,231 + -0.3
3,913,241 - -1.1
3,913,268 + -0.1
3,913,269 - -1.5
3,913,275 - -0.8
3,913,275 - -0.6
3,913,308 - -0.6
3,913,412 + -0.0
3,913,413 - +0.0
3,913,436 + +0.2
3,913,483 - -1.9
3,913,486 + -0.2
3,913,489 - +0.2
3,913,543 - +0.5
3,913,698 + CA264_16785 0.11 +0.2
3,913,752 - CA264_16785 0.13 -0.6
3,913,807 - CA264_16785 0.14 -0.5
3,913,808 + CA264_16785 0.14 +0.1
3,913,808 + CA264_16785 0.14 +0.2
3,913,809 - CA264_16785 0.14 -0.5
3,913,943 - CA264_16785 0.18 +1.1
3,914,021 - CA264_16785 0.20 -0.1

Or see this region's nucleotide sequence