Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16170

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16160 and CA264_16165 are separated by 16 nucleotidesCA264_16165 and CA264_16170 are separated by 190 nucleotidesCA264_16170 and CA264_16175 are separated by 288 nucleotides CA264_16160: CA264_16160 - hypothetical protein, at 3,763,588 to 3,763,914 _16160 CA264_16165: CA264_16165 - hypothetical protein, at 3,763,931 to 3,764,479 _16165 CA264_16170: CA264_16170 - hypothetical protein, at 3,764,670 to 3,765,293 _16170 CA264_16175: CA264_16175 - hypothetical protein, at 3,765,582 to 3,765,959 _16175 Position (kb) 3764 3765 3766Strain fitness (log2 ratio) -2 -1 0 1 2at 3763.932 kb on + strandat 3763.933 kb on - strandat 3763.959 kb on - strandat 3764.014 kb on + strand, within CA264_16165at 3764.106 kb on - strand, within CA264_16165at 3764.107 kb on + strand, within CA264_16165at 3764.107 kb on + strand, within CA264_16165at 3764.107 kb on + strand, within CA264_16165at 3764.108 kb on - strand, within CA264_16165at 3764.108 kb on - strand, within CA264_16165at 3764.154 kb on - strand, within CA264_16165at 3764.250 kb on + strand, within CA264_16165at 3764.250 kb on + strand, within CA264_16165at 3764.274 kb on - strand, within CA264_16165at 3764.483 kb on + strandat 3764.484 kb on - strandat 3764.484 kb on - strandat 3764.486 kb on - strandat 3764.487 kb on + strandat 3764.501 kb on + strandat 3764.512 kb on + strandat 3764.580 kb on - strandat 3764.580 kb on - strandat 3764.656 kb on + strandat 3764.656 kb on + strandat 3764.656 kb on + strandat 3764.695 kb on + strandat 3764.699 kb on - strandat 3764.707 kb on + strandat 3765.073 kb on + strand, within CA264_16170at 3765.073 kb on + strand, within CA264_16170at 3765.073 kb on + strand, within CA264_16170at 3765.073 kb on + strand, within CA264_16170at 3765.074 kb on - strand, within CA264_16170at 3765.076 kb on + strand, within CA264_16170at 3765.076 kb on + strand, within CA264_16170at 3765.077 kb on - strand, within CA264_16170at 3765.167 kb on - strand, within CA264_16170at 3765.176 kb on + strand, within CA264_16170at 3765.238 kb on + strandat 3765.239 kb on - strandat 3765.258 kb on + strandat 3765.276 kb on + strandat 3765.276 kb on + strandat 3765.300 kb on - strandat 3765.404 kb on + strandat 3765.405 kb on - strandat 3765.405 kb on - strandat 3765.405 kb on - strandat 3765.405 kb on - strandat 3765.430 kb on + strandat 3765.434 kb on + strandat 3765.440 kb on + strandat 3765.441 kb on - strandat 3765.444 kb on + strandat 3765.445 kb on - strandat 3765.526 kb on - strandat 3765.638 kb on + strand, within CA264_16175at 3765.674 kb on + strand, within CA264_16175at 3765.739 kb on + strand, within CA264_16175at 3765.746 kb on + strand, within CA264_16175at 3765.793 kb on - strand, within CA264_16175at 3765.822 kb on + strand, within CA264_16175at 3765.823 kb on - strand, within CA264_16175at 3765.842 kb on - strand, within CA264_16175at 3765.937 kb on + strandat 3765.937 kb on + strandat 3765.975 kb on + strandat 3765.976 kb on - strandat 3765.976 kb on - strandat 3765.976 kb on - strandat 3765.976 kb on - strandat 3765.976 kb on - strandat 3765.977 kb on + strandat 3765.977 kb on + strandat 3765.977 kb on + strandat 3765.978 kb on - strandat 3765.978 kb on - strandat 3765.978 kb on - strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.979 kb on + strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.980 kb on - strandat 3765.981 kb on + strandat 3766.004 kb on + strandat 3766.006 kb on + strandat 3766.045 kb on - strandat 3766.045 kb on - strandat 3766.045 kb on - strandat 3766.045 kb on - strandat 3766.061 kb on - strandat 3766.088 kb on - strandat 3766.088 kb on - strandat 3766.092 kb on + strandat 3766.093 kb on - strandat 3766.097 kb on + strandat 3766.097 kb on + strandat 3766.098 kb on - strandat 3766.098 kb on - strandat 3766.100 kb on - strandat 3766.169 kb on + strandat 3766.177 kb on - strandat 3766.238 kb on + strandat 3766.238 kb on + strandat 3766.251 kb on + strandat 3766.252 kb on - strandat 3766.259 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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3,763,932 + +0.2
3,763,933 - -0.2
3,763,959 - +0.4
3,764,014 + CA264_16165 0.15 +0.2
3,764,106 - CA264_16165 0.32 -0.2
3,764,107 + CA264_16165 0.32 -0.2
3,764,107 + CA264_16165 0.32 -0.3
3,764,107 + CA264_16165 0.32 -0.7
3,764,108 - CA264_16165 0.32 -0.0
3,764,108 - CA264_16165 0.32 -0.1
3,764,154 - CA264_16165 0.41 -0.3
3,764,250 + CA264_16165 0.58 -1.1
3,764,250 + CA264_16165 0.58 -0.2
3,764,274 - CA264_16165 0.62 +0.4
3,764,483 + +0.7
3,764,484 - +0.0
3,764,484 - +0.4
3,764,486 - -0.3
3,764,487 + -1.9
3,764,501 + -0.8
3,764,512 + +0.5
3,764,580 - +0.0
3,764,580 - -0.3
3,764,656 + +0.4
3,764,656 + +0.4
3,764,656 + +1.5
3,764,695 + -0.9
3,764,699 - -1.1
3,764,707 + -0.9
3,765,073 + CA264_16170 0.65 -0.0
3,765,073 + CA264_16170 0.65 -1.6
3,765,073 + CA264_16170 0.65 -2.1
3,765,073 + CA264_16170 0.65 -1.3
3,765,074 - CA264_16170 0.65 +0.0
3,765,076 + CA264_16170 0.65 -0.4
3,765,076 + CA264_16170 0.65 -0.7
3,765,077 - CA264_16170 0.65 +0.2
3,765,167 - CA264_16170 0.80 -0.9
3,765,176 + CA264_16170 0.81 -1.0
3,765,238 + -0.7
3,765,239 - -0.4
3,765,258 + +0.1
3,765,276 + -0.9
3,765,276 + +1.2
3,765,300 - -0.7
3,765,404 + -0.4
3,765,405 - -0.1
3,765,405 - +0.2
3,765,405 - +1.2
3,765,405 - +0.1
3,765,430 + +0.0
3,765,434 + +0.0
3,765,440 + -0.5
3,765,441 - +0.2
3,765,444 + +0.2
3,765,445 - -0.2
3,765,526 - +0.1
3,765,638 + CA264_16175 0.15 +2.0
3,765,674 + CA264_16175 0.24 -0.4
3,765,739 + CA264_16175 0.42 +0.2
3,765,746 + CA264_16175 0.43 +0.1
3,765,793 - CA264_16175 0.56 -0.8
3,765,822 + CA264_16175 0.63 -1.0
3,765,823 - CA264_16175 0.64 +0.1
3,765,842 - CA264_16175 0.69 -0.3
3,765,937 + +0.3
3,765,937 + +0.4
3,765,975 + -0.6
3,765,976 - -0.2
3,765,976 - +0.1
3,765,976 - -0.1
3,765,976 - -0.1
3,765,976 - -0.1
3,765,977 + +0.7
3,765,977 + +0.4
3,765,977 + -1.1
3,765,978 - +0.3
3,765,978 - +2.0
3,765,978 - +0.3
3,765,979 + +0.5
3,765,979 + +0.3
3,765,979 + +0.4
3,765,979 + +0.7
3,765,979 + +0.3
3,765,979 + +0.4
3,765,979 + -0.4
3,765,979 + +0.4
3,765,979 + -0.2
3,765,979 + +2.4
3,765,979 + -0.3
3,765,980 - -0.4
3,765,980 - -1.3
3,765,980 - -2.4
3,765,980 - -0.4
3,765,980 - -0.3
3,765,980 - +0.1
3,765,980 - -0.5
3,765,980 - -0.7
3,765,980 - +0.2
3,765,980 - -0.1
3,765,981 + +0.9
3,766,004 + -1.1
3,766,006 + -0.5
3,766,045 - -0.2
3,766,045 - -1.6
3,766,045 - -1.0
3,766,045 - -0.6
3,766,061 - -0.2
3,766,088 - -0.3
3,766,088 - +0.1
3,766,092 + +0.1
3,766,093 - -0.4
3,766,097 + -0.5
3,766,097 + -0.1
3,766,098 - +1.6
3,766,098 - +0.6
3,766,100 - -1.1
3,766,169 + +0.4
3,766,177 - +0.2
3,766,238 + -0.5
3,766,238 + -0.0
3,766,251 + -0.1
3,766,252 - -0.4
3,766,259 + -0.5

Or see this region's nucleotide sequence