Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15750

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_15740 and CA264_15745 are separated by 80 nucleotidesCA264_15745 and CA264_15750 are separated by 409 nucleotidesCA264_15750 and CA264_15755 are separated by 117 nucleotidesCA264_15755 and CA264_15760 are separated by 428 nucleotides CA264_15740: CA264_15740 - metal-dependent phosphohydrolase, at 3,677,649 to 3,678,881 _15740 CA264_15745: CA264_15745 - tRNA-Arg, at 3,678,962 to 3,679,036 _15745 CA264_15750: CA264_15750 - hypothetical protein, at 3,679,446 to 3,679,682 _15750 CA264_15755: CA264_15755 - hypothetical protein, at 3,679,800 to 3,680,165 _15755 CA264_15760: CA264_15760 - hypothetical protein, at 3,680,594 to 3,680,938 _15760 Position (kb) 3679 3680Strain fitness (log2 ratio) -2 -1 0 1 2at 3678.456 kb on - strand, within CA264_15740at 3678.459 kb on + strand, within CA264_15740at 3678.460 kb on - strand, within CA264_15740at 3678.543 kb on - strand, within CA264_15740at 3678.551 kb on - strand, within CA264_15740at 3678.738 kb on + strand, within CA264_15740at 3678.762 kb on + strandat 3678.763 kb on - strandat 3678.770 kb on - strandat 3678.770 kb on - strandat 3678.813 kb on + strandat 3678.814 kb on - strandat 3678.818 kb on + strandat 3678.818 kb on + strandat 3678.818 kb on + strandat 3678.819 kb on - strandat 3678.819 kb on - strandat 3678.819 kb on - strandat 3678.819 kb on - strandat 3678.819 kb on - strandat 3678.819 kb on - strandat 3678.820 kb on + strandat 3678.820 kb on + strandat 3678.821 kb on - strandat 3678.821 kb on - strandat 3678.824 kb on + strandat 3678.880 kb on - strandat 3678.884 kb on + strandat 3678.885 kb on - strandat 3678.890 kb on + strandat 3678.893 kb on - strandat 3678.893 kb on - strandat 3678.893 kb on - strandat 3678.893 kb on - strandat 3678.925 kb on + strandat 3678.928 kb on + strandat 3678.929 kb on - strandat 3678.982 kb on - strand, within CA264_15745at 3679.124 kb on - strandat 3679.142 kb on + strandat 3679.241 kb on + strandat 3679.241 kb on + strandat 3679.242 kb on - strandat 3679.298 kb on + strandat 3679.298 kb on + strandat 3679.298 kb on + strandat 3679.304 kb on - strandat 3679.304 kb on - strandat 3679.327 kb on - strandat 3679.327 kb on - strandat 3679.330 kb on + strandat 3679.331 kb on - strandat 3679.339 kb on + strandat 3679.345 kb on + strandat 3679.352 kb on + strandat 3679.353 kb on - strandat 3679.376 kb on - strandat 3679.380 kb on + strandat 3679.381 kb on - strandat 3679.390 kb on + strandat 3679.390 kb on + strandat 3679.391 kb on - strandat 3679.408 kb on + strandat 3679.414 kb on + strandat 3679.414 kb on + strandat 3679.421 kb on + strandat 3679.507 kb on + strand, within CA264_15750at 3679.618 kb on + strand, within CA264_15750at 3679.618 kb on + strand, within CA264_15750at 3679.618 kb on + strandat 3679.619 kb on - strand, within CA264_15750at 3679.619 kb on - strand, within CA264_15750at 3679.619 kb on - strand, within CA264_15750at 3679.623 kb on - strand, within CA264_15750at 3679.641 kb on + strand, within CA264_15750at 3679.699 kb on + strandat 3679.721 kb on - strandat 3679.739 kb on + strandat 3679.739 kb on + strandat 3679.775 kb on + strandat 3679.776 kb on - strandat 3679.779 kb on + strandat 3679.779 kb on + strandat 3679.779 kb on + strandat 3679.780 kb on - strandat 3679.791 kb on - strandat 3679.873 kb on + strand, within CA264_15755at 3679.874 kb on - strand, within CA264_15755at 3679.943 kb on + strand, within CA264_15755at 3679.993 kb on - strand, within CA264_15755at 3680.001 kb on + strand, within CA264_15755at 3680.014 kb on + strand, within CA264_15755at 3680.015 kb on - strand, within CA264_15755at 3680.077 kb on + strand, within CA264_15755at 3680.078 kb on - strand, within CA264_15755at 3680.115 kb on + strand, within CA264_15755at 3680.116 kb on - strand, within CA264_15755at 3680.116 kb on - strand, within CA264_15755at 3680.117 kb on + strand, within CA264_15755at 3680.118 kb on - strand, within CA264_15755at 3680.123 kb on - strand, within CA264_15755at 3680.128 kb on + strand, within CA264_15755at 3680.156 kb on - strandat 3680.177 kb on + strandat 3680.185 kb on + strandat 3680.186 kb on - strandat 3680.186 kb on - strandat 3680.254 kb on + strandat 3680.254 kb on + strandat 3680.255 kb on - strandat 3680.336 kb on + strandat 3680.338 kb on + strandat 3680.338 kb on + strandat 3680.339 kb on - strandat 3680.339 kb on - strandat 3680.367 kb on - strandat 3680.369 kb on - strandat 3680.382 kb on + strandat 3680.382 kb on + strandat 3680.420 kb on + strandat 3680.440 kb on + strandat 3680.473 kb on - strandat 3680.517 kb on + strandat 3680.537 kb on + strandat 3680.544 kb on - strandat 3680.561 kb on + strandat 3680.562 kb on - strandat 3680.562 kb on - strandat 3680.565 kb on + strandat 3680.565 kb on + strandat 3680.565 kb on + strandat 3680.566 kb on - strandat 3680.566 kb on - strandat 3680.566 kb on - strandat 3680.566 kb on - strandat 3680.566 kb on - strandat 3680.567 kb on + strandat 3680.568 kb on - strandat 3680.568 kb on - strandat 3680.568 kb on - strandat 3680.568 kb on - strandat 3680.570 kb on - strandat 3680.570 kb on - strandat 3680.575 kb on + strandat 3680.575 kb on + strandat 3680.575 kb on + strandat 3680.575 kb on + strandat 3680.575 kb on + strandat 3680.575 kb on + strandat 3680.575 kb on + strandat 3680.576 kb on - strandat 3680.576 kb on - strandat 3680.576 kb on - strandat 3680.587 kb on - strandat 3680.635 kb on - strand, within CA264_15760at 3680.635 kb on - strand, within CA264_15760

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
remove
3,678,456 - CA264_15740 0.65 -1.2
3,678,459 + CA264_15740 0.66 +0.1
3,678,460 - CA264_15740 0.66 -0.0
3,678,543 - CA264_15740 0.73 +1.8
3,678,551 - CA264_15740 0.73 +2.4
3,678,738 + CA264_15740 0.88 -0.0
3,678,762 + +0.9
3,678,763 - -0.2
3,678,770 - -0.3
3,678,770 - +0.1
3,678,813 + -0.0
3,678,814 - -1.7
3,678,818 + +0.3
3,678,818 + -0.3
3,678,818 + +1.0
3,678,819 - -1.0
3,678,819 - +0.6
3,678,819 - +1.2
3,678,819 - +0.0
3,678,819 - -0.4
3,678,819 - +0.3
3,678,820 + -0.4
3,678,820 + +0.4
3,678,821 - -0.3
3,678,821 - +0.9
3,678,824 + +0.1
3,678,880 - +0.1
3,678,884 + -0.0
3,678,885 - -0.6
3,678,890 + -0.2
3,678,893 - +0.3
3,678,893 - +0.3
3,678,893 - -0.2
3,678,893 - +1.7
3,678,925 + +1.0
3,678,928 + +0.0
3,678,929 - -0.3
3,678,982 - CA264_15745 0.27 +0.0
3,679,124 - +0.5
3,679,142 + +0.3
3,679,241 + +0.7
3,679,241 + +0.0
3,679,242 - -1.0
3,679,298 + +0.6
3,679,298 + +0.3
3,679,298 + -0.5
3,679,304 - -0.3
3,679,304 - +0.1
3,679,327 - -1.0
3,679,327 - +1.6
3,679,330 + -0.1
3,679,331 - +0.0
3,679,339 + -0.6
3,679,345 + -0.6
3,679,352 + -0.0
3,679,353 - +0.4
3,679,376 - -0.9
3,679,380 + +0.4
3,679,381 - +0.7
3,679,390 + +0.4
3,679,390 + +1.0
3,679,391 - -0.2
3,679,408 + -0.2
3,679,414 + -0.1
3,679,414 + -0.0
3,679,421 + -0.2
3,679,507 + CA264_15750 0.26 +0.3
3,679,618 + CA264_15750 0.73 -0.4
3,679,618 + CA264_15750 0.73 -0.1
3,679,618 + +0.6
3,679,619 - CA264_15750 0.73 -0.2
3,679,619 - CA264_15750 0.73 +0.7
3,679,619 - CA264_15750 0.73 -0.3
3,679,623 - CA264_15750 0.75 -0.9
3,679,641 + CA264_15750 0.82 -0.5
3,679,699 + +0.5
3,679,721 - +0.5
3,679,739 + -0.2
3,679,739 + +1.7
3,679,775 + -1.0
3,679,776 - -0.3
3,679,779 + +0.5
3,679,779 + -1.0
3,679,779 + +1.1
3,679,780 - +1.4
3,679,791 - -1.0
3,679,873 + CA264_15755 0.20 -1.0
3,679,874 - CA264_15755 0.20 +0.5
3,679,943 + CA264_15755 0.39 -0.3
3,679,993 - CA264_15755 0.53 -0.5
3,680,001 + CA264_15755 0.55 -0.1
3,680,014 + CA264_15755 0.58 +0.2
3,680,015 - CA264_15755 0.59 +0.7
3,680,077 + CA264_15755 0.76 +1.6
3,680,078 - CA264_15755 0.76 -0.0
3,680,115 + CA264_15755 0.86 -0.8
3,680,116 - CA264_15755 0.86 -0.0
3,680,116 - CA264_15755 0.86 -0.8
3,680,117 + CA264_15755 0.87 +0.7
3,680,118 - CA264_15755 0.87 -0.8
3,680,123 - CA264_15755 0.88 -0.2
3,680,128 + CA264_15755 0.90 -0.7
3,680,156 - -0.3
3,680,177 + -0.6
3,680,185 + -0.5
3,680,186 - +0.6
3,680,186 - -0.4
3,680,254 + -0.3
3,680,254 + -0.0
3,680,255 - -1.1
3,680,336 + +1.0
3,680,338 + +0.4
3,680,338 + +0.4
3,680,339 - -0.2
3,680,339 - -0.6
3,680,367 - -0.8
3,680,369 - -0.8
3,680,382 + +0.8
3,680,382 + -0.5
3,680,420 + -0.6
3,680,440 + +0.2
3,680,473 - +1.0
3,680,517 + -0.1
3,680,537 + +0.4
3,680,544 - +2.2
3,680,561 + -0.4
3,680,562 - +0.7
3,680,562 - -1.1
3,680,565 + +0.5
3,680,565 + -0.8
3,680,565 + -2.1
3,680,566 - +0.3
3,680,566 - -0.6
3,680,566 - -1.7
3,680,566 - -1.4
3,680,566 - -0.5
3,680,567 + -0.8
3,680,568 - +0.5
3,680,568 - +1.0
3,680,568 - -0.6
3,680,568 - -0.7
3,680,570 - -0.4
3,680,570 - +0.5
3,680,575 + -0.6
3,680,575 + +1.6
3,680,575 + -0.0
3,680,575 + +0.2
3,680,575 + -0.2
3,680,575 + +0.2
3,680,575 + +0.1
3,680,576 - +1.9
3,680,576 - +0.9
3,680,576 - -0.2
3,680,587 - +0.7
3,680,635 - CA264_15760 0.12 -0.5
3,680,635 - CA264_15760 0.12 +0.4

Or see this region's nucleotide sequence