Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13675

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13670 and CA264_13675 are separated by 368 nucleotidesCA264_13675 and CA264_13680 are separated by 95 nucleotides CA264_13670: CA264_13670 - DNA starvation/stationary phase protection protein, at 3,196,442 to 3,197,044 _13670 CA264_13675: CA264_13675 - GntR family transcriptional regulator, at 3,197,413 to 3,198,255 _13675 CA264_13680: CA264_13680 - hypothetical protein, at 3,198,351 to 3,200,879 _13680 Position (kb) 3197 3198 3199Strain fitness (log2 ratio) -3 -2 -1 0 1at 3196.442 kb on - strandat 3196.549 kb on + strand, within CA264_13670at 3196.550 kb on - strand, within CA264_13670at 3196.557 kb on + strand, within CA264_13670at 3196.559 kb on + strand, within CA264_13670at 3196.573 kb on + strand, within CA264_13670at 3196.638 kb on - strand, within CA264_13670at 3196.703 kb on - strand, within CA264_13670at 3196.985 kb on - strandat 3197.057 kb on - strandat 3197.060 kb on + strandat 3197.061 kb on - strandat 3197.061 kb on - strandat 3197.068 kb on - strandat 3197.068 kb on - strandat 3197.068 kb on - strandat 3197.125 kb on - strandat 3197.136 kb on - strandat 3197.321 kb on - strandat 3197.326 kb on + strandat 3197.388 kb on + strandat 3197.388 kb on + strandat 3197.407 kb on + strandat 3197.407 kb on + strandat 3197.407 kb on + strandat 3197.408 kb on - strandat 3197.408 kb on - strandat 3197.408 kb on - strandat 3197.409 kb on + strandat 3197.417 kb on + strandat 3197.418 kb on - strandat 3197.431 kb on + strandat 3197.431 kb on + strandat 3197.432 kb on - strandat 3197.459 kb on + strandat 3197.459 kb on + strandat 3197.746 kb on + strand, within CA264_13675at 3197.756 kb on - strand, within CA264_13675at 3197.786 kb on + strand, within CA264_13675at 3197.787 kb on - strand, within CA264_13675at 3197.789 kb on + strand, within CA264_13675at 3197.790 kb on - strand, within CA264_13675at 3197.813 kb on - strand, within CA264_13675at 3197.838 kb on - strand, within CA264_13675at 3197.862 kb on - strand, within CA264_13675at 3197.899 kb on - strand, within CA264_13675at 3197.914 kb on + strand, within CA264_13675at 3197.915 kb on - strand, within CA264_13675at 3197.915 kb on - strand, within CA264_13675at 3197.980 kb on + strand, within CA264_13675at 3197.980 kb on + strand, within CA264_13675at 3197.980 kb on + strand, within CA264_13675at 3197.983 kb on - strand, within CA264_13675at 3198.284 kb on + strandat 3198.294 kb on + strandat 3198.294 kb on + strandat 3198.295 kb on - strandat 3198.295 kb on - strandat 3198.297 kb on - strandat 3198.315 kb on - strandat 3198.344 kb on - strandat 3198.350 kb on + strandat 3198.350 kb on + strandat 3198.357 kb on - strandat 3198.359 kb on + strandat 3198.360 kb on - strandat 3198.365 kb on - strandat 3198.365 kb on - strandat 3198.367 kb on + strandat 3198.367 kb on + strandat 3198.368 kb on - strandat 3198.380 kb on + strandat 3198.553 kb on - strandat 3198.613 kb on - strand, within CA264_13680at 3198.670 kb on + strand, within CA264_13680at 3198.670 kb on + strand, within CA264_13680at 3198.716 kb on + strand, within CA264_13680at 3198.741 kb on + strand, within CA264_13680at 3198.886 kb on + strand, within CA264_13680at 3198.955 kb on - strand, within CA264_13680at 3199.003 kb on + strand, within CA264_13680at 3199.004 kb on - strand, within CA264_13680at 3199.004 kb on - strand, within CA264_13680at 3199.008 kb on - strand, within CA264_13680at 3199.088 kb on + strand, within CA264_13680at 3199.095 kb on + strand, within CA264_13680at 3199.095 kb on + strand, within CA264_13680at 3199.096 kb on - strand, within CA264_13680at 3199.096 kb on - strand, within CA264_13680at 3199.096 kb on - strand, within CA264_13680at 3199.112 kb on - strand, within CA264_13680at 3199.166 kb on + strand, within CA264_13680at 3199.187 kb on - strand, within CA264_13680

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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3,196,442 - -3.1
3,196,549 + CA264_13670 0.18 -0.6
3,196,550 - CA264_13670 0.18 -2.6
3,196,557 + CA264_13670 0.19 -0.4
3,196,559 + CA264_13670 0.19 +0.0
3,196,573 + CA264_13670 0.22 -0.6
3,196,638 - CA264_13670 0.33 -2.0
3,196,703 - CA264_13670 0.43 -0.5
3,196,985 - -0.0
3,197,057 - -0.5
3,197,060 + -0.6
3,197,061 - -0.5
3,197,061 - -1.4
3,197,068 - -0.4
3,197,068 - -0.7
3,197,068 - -0.4
3,197,125 - -0.3
3,197,136 - -0.8
3,197,321 - -0.6
3,197,326 + -0.9
3,197,388 + +0.2
3,197,388 + -0.0
3,197,407 + +0.6
3,197,407 + -0.3
3,197,407 + +0.2
3,197,408 - +0.7
3,197,408 - +1.1
3,197,408 - -0.8
3,197,409 + -0.5
3,197,417 + -0.0
3,197,418 - +0.4
3,197,431 + -0.4
3,197,431 + +0.3
3,197,432 - -0.6
3,197,459 + -0.2
3,197,459 + -2.0
3,197,746 + CA264_13675 0.40 +0.5
3,197,756 - CA264_13675 0.41 +0.3
3,197,786 + CA264_13675 0.44 +0.5
3,197,787 - CA264_13675 0.44 +0.3
3,197,789 + CA264_13675 0.45 -0.8
3,197,790 - CA264_13675 0.45 +0.6
3,197,813 - CA264_13675 0.47 -0.2
3,197,838 - CA264_13675 0.50 +0.0
3,197,862 - CA264_13675 0.53 -0.9
3,197,899 - CA264_13675 0.58 +0.8
3,197,914 + CA264_13675 0.59 -0.2
3,197,915 - CA264_13675 0.60 +0.0
3,197,915 - CA264_13675 0.60 -0.3
3,197,980 + CA264_13675 0.67 -0.5
3,197,980 + CA264_13675 0.67 +0.5
3,197,980 + CA264_13675 0.67 -0.2
3,197,983 - CA264_13675 0.68 +0.1
3,198,284 + -0.3
3,198,294 + +0.8
3,198,294 + -0.3
3,198,295 - -0.0
3,198,295 - +0.2
3,198,297 - -0.6
3,198,315 - -0.6
3,198,344 - -0.6
3,198,350 + -0.2
3,198,350 + +0.2
3,198,357 - -1.0
3,198,359 + -1.5
3,198,360 - -0.6
3,198,365 - -0.6
3,198,365 - -0.6
3,198,367 + +0.8
3,198,367 + -0.2
3,198,368 - -0.0
3,198,380 + -0.4
3,198,553 - -0.0
3,198,613 - CA264_13680 0.10 +1.2
3,198,670 + CA264_13680 0.13 -0.7
3,198,670 + CA264_13680 0.13 -0.4
3,198,716 + CA264_13680 0.14 -0.3
3,198,741 + CA264_13680 0.15 +1.2
3,198,886 + CA264_13680 0.21 +0.0
3,198,955 - CA264_13680 0.24 -1.2
3,199,003 + CA264_13680 0.26 +0.5
3,199,004 - CA264_13680 0.26 -0.3
3,199,004 - CA264_13680 0.26 +0.1
3,199,008 - CA264_13680 0.26 +1.6
3,199,088 + CA264_13680 0.29 -0.1
3,199,095 + CA264_13680 0.29 +0.4
3,199,095 + CA264_13680 0.29 -0.8
3,199,096 - CA264_13680 0.29 -0.1
3,199,096 - CA264_13680 0.29 +0.3
3,199,096 - CA264_13680 0.29 +0.6
3,199,112 - CA264_13680 0.30 -0.1
3,199,166 + CA264_13680 0.32 +0.3
3,199,187 - CA264_13680 0.33 +0.2

Or see this region's nucleotide sequence