Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12240

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12230 and CA264_12235 are separated by 2 nucleotidesCA264_12235 and CA264_12240 are separated by 287 nucleotidesCA264_12240 and CA264_12245 overlap by 1 nucleotidesCA264_12245 and CA264_12250 overlap by 48 nucleotides CA264_12230: CA264_12230 - hypothetical protein, at 2,849,616 to 2,850,200 _12230 CA264_12235: CA264_12235 - hypothetical protein, at 2,850,203 to 2,850,850 _12235 CA264_12240: CA264_12240 - ABC transporter ATP-binding protein, at 2,851,138 to 2,852,097 _12240 CA264_12245: CA264_12245 - ABC transporter permease, at 2,852,097 to 2,852,867 _12245 CA264_12250: CA264_12250 - hypothetical protein, at 2,852,820 to 2,853,548 _12250 Position (kb) 2851 2852 2853Strain fitness (log2 ratio) -1 0 1 2at 2850.200 kb on + strandat 2850.200 kb on + strandat 2850.201 kb on - strandat 2850.205 kb on - strandat 2850.205 kb on - strandat 2850.205 kb on - strandat 2850.296 kb on + strand, within CA264_12235at 2850.297 kb on - strand, within CA264_12235at 2850.299 kb on - strand, within CA264_12235at 2850.299 kb on - strand, within CA264_12235at 2850.317 kb on + strand, within CA264_12235at 2850.318 kb on - strand, within CA264_12235at 2850.331 kb on - strand, within CA264_12235at 2850.355 kb on - strand, within CA264_12235at 2850.355 kb on - strand, within CA264_12235at 2850.395 kb on + strand, within CA264_12235at 2850.395 kb on + strand, within CA264_12235at 2850.396 kb on - strand, within CA264_12235at 2850.396 kb on - strand, within CA264_12235at 2850.450 kb on + strand, within CA264_12235at 2850.486 kb on - strand, within CA264_12235at 2850.486 kb on - strand, within CA264_12235at 2850.486 kb on - strand, within CA264_12235at 2850.489 kb on + strand, within CA264_12235at 2850.514 kb on + strand, within CA264_12235at 2850.515 kb on - strand, within CA264_12235at 2850.523 kb on + strand, within CA264_12235at 2850.524 kb on - strand, within CA264_12235at 2850.524 kb on - strand, within CA264_12235at 2850.525 kb on + strand, within CA264_12235at 2850.526 kb on - strand, within CA264_12235at 2850.526 kb on - strand, within CA264_12235at 2850.588 kb on + strand, within CA264_12235at 2850.594 kb on + strand, within CA264_12235at 2850.788 kb on - strandat 2850.838 kb on + strandat 2850.867 kb on - strandat 2850.922 kb on - strandat 2850.922 kb on - strandat 2850.942 kb on + strandat 2850.943 kb on - strandat 2850.943 kb on - strandat 2850.956 kb on - strandat 2851.016 kb on + strandat 2851.054 kb on - strandat 2851.144 kb on + strandat 2851.184 kb on + strandat 2851.207 kb on - strandat 2851.209 kb on - strandat 2851.209 kb on - strandat 2851.217 kb on + strandat 2851.217 kb on + strandat 2851.218 kb on - strandat 2851.218 kb on - strandat 2851.218 kb on - strandat 2851.218 kb on - strandat 2851.221 kb on + strandat 2851.222 kb on - strandat 2851.290 kb on + strand, within CA264_12240at 2851.291 kb on - strand, within CA264_12240at 2851.491 kb on - strand, within CA264_12240at 2851.499 kb on + strand, within CA264_12240at 2851.561 kb on - strand, within CA264_12240at 2851.561 kb on - strand, within CA264_12240at 2851.708 kb on - strand, within CA264_12240at 2851.743 kb on - strand, within CA264_12240at 2851.743 kb on - strand, within CA264_12240at 2851.743 kb on - strand, within CA264_12240at 2851.743 kb on - strand, within CA264_12240at 2851.778 kb on + strand, within CA264_12240at 2851.778 kb on + strand, within CA264_12240at 2851.833 kb on - strand, within CA264_12240at 2852.124 kb on - strandat 2852.155 kb on + strandat 2852.155 kb on + strandat 2852.244 kb on + strand, within CA264_12245at 2852.245 kb on - strand, within CA264_12245at 2852.340 kb on + strand, within CA264_12245at 2852.341 kb on - strand, within CA264_12245at 2852.372 kb on - strand, within CA264_12245at 2852.469 kb on + strand, within CA264_12245at 2852.539 kb on - strand, within CA264_12245at 2852.634 kb on + strand, within CA264_12245at 2852.691 kb on + strand, within CA264_12245at 2852.801 kb on - strandat 2852.838 kb on + strandat 2853.033 kb on + strand, within CA264_12250at 2853.033 kb on + strand, within CA264_12250at 2853.034 kb on - strand, within CA264_12250at 2853.042 kb on + strand, within CA264_12250at 2853.043 kb on - strand, within CA264_12250at 2853.083 kb on - strand, within CA264_12250

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,850,200 + +0.2
2,850,200 + -1.0
2,850,201 - +0.7
2,850,205 - +0.4
2,850,205 - +0.0
2,850,205 - -0.1
2,850,296 + CA264_12235 0.14 +0.9
2,850,297 - CA264_12235 0.15 -0.6
2,850,299 - CA264_12235 0.15 -0.2
2,850,299 - CA264_12235 0.15 -0.7
2,850,317 + CA264_12235 0.18 +0.7
2,850,318 - CA264_12235 0.18 +0.5
2,850,331 - CA264_12235 0.20 +0.3
2,850,355 - CA264_12235 0.23 -0.3
2,850,355 - CA264_12235 0.23 +0.7
2,850,395 + CA264_12235 0.30 +0.2
2,850,395 + CA264_12235 0.30 +0.2
2,850,396 - CA264_12235 0.30 +0.1
2,850,396 - CA264_12235 0.30 -0.3
2,850,450 + CA264_12235 0.38 +0.5
2,850,486 - CA264_12235 0.44 -0.1
2,850,486 - CA264_12235 0.44 -0.4
2,850,486 - CA264_12235 0.44 -0.2
2,850,489 + CA264_12235 0.44 -0.1
2,850,514 + CA264_12235 0.48 -0.9
2,850,515 - CA264_12235 0.48 -0.1
2,850,523 + CA264_12235 0.49 +0.3
2,850,524 - CA264_12235 0.50 -0.2
2,850,524 - CA264_12235 0.50 -0.2
2,850,525 + CA264_12235 0.50 +0.1
2,850,526 - CA264_12235 0.50 +0.3
2,850,526 - CA264_12235 0.50 -0.1
2,850,588 + CA264_12235 0.59 +0.8
2,850,594 + CA264_12235 0.60 -0.4
2,850,788 - -1.1
2,850,838 + -0.5
2,850,867 - +2.3
2,850,922 - -0.1
2,850,922 - -0.2
2,850,942 + +0.3
2,850,943 - -0.6
2,850,943 - +0.1
2,850,956 - +0.1
2,851,016 + -0.3
2,851,054 - +0.2
2,851,144 + -0.5
2,851,184 + -0.0
2,851,207 - -1.4
2,851,209 - +0.4
2,851,209 - -0.4
2,851,217 + +0.2
2,851,217 + -0.2
2,851,218 - -0.5
2,851,218 - +1.1
2,851,218 - -0.1
2,851,218 - +0.2
2,851,221 + -0.3
2,851,222 - +2.0
2,851,290 + CA264_12240 0.16 +0.8
2,851,291 - CA264_12240 0.16 -1.2
2,851,491 - CA264_12240 0.37 -0.4
2,851,499 + CA264_12240 0.38 +0.2
2,851,561 - CA264_12240 0.44 -0.1
2,851,561 - CA264_12240 0.44 +0.2
2,851,708 - CA264_12240 0.59 -1.0
2,851,743 - CA264_12240 0.63 +1.8
2,851,743 - CA264_12240 0.63 -0.1
2,851,743 - CA264_12240 0.63 -0.9
2,851,743 - CA264_12240 0.63 -0.2
2,851,778 + CA264_12240 0.67 +0.2
2,851,778 + CA264_12240 0.67 -0.5
2,851,833 - CA264_12240 0.72 -0.7
2,852,124 - +0.8
2,852,155 + +0.9
2,852,155 + -0.5
2,852,244 + CA264_12245 0.19 -0.9
2,852,245 - CA264_12245 0.19 +0.2
2,852,340 + CA264_12245 0.32 -0.4
2,852,341 - CA264_12245 0.32 -1.0
2,852,372 - CA264_12245 0.36 +0.0
2,852,469 + CA264_12245 0.48 -0.9
2,852,539 - CA264_12245 0.57 -0.4
2,852,634 + CA264_12245 0.70 -1.0
2,852,691 + CA264_12245 0.77 +0.9
2,852,801 - -0.6
2,852,838 + -0.2
2,853,033 + CA264_12250 0.29 +0.1
2,853,033 + CA264_12250 0.29 -0.7
2,853,034 - CA264_12250 0.29 +0.0
2,853,042 + CA264_12250 0.30 -1.7
2,853,043 - CA264_12250 0.31 -0.1
2,853,083 - CA264_12250 0.36 +0.6

Or see this region's nucleotide sequence