Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09175

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09165 and CA264_09170 are separated by 168 nucleotidesCA264_09170 and CA264_09175 are separated by 1 nucleotidesCA264_09175 and CA264_09180 are separated by 143 nucleotides CA264_09165: CA264_09165 - AraC family transcriptional regulator, at 2,148,750 to 2,149,328 _09165 CA264_09170: CA264_09170 - hypothetical protein, at 2,149,497 to 2,149,922 _09170 CA264_09175: CA264_09175 - nuclease PIN, at 2,149,924 to 2,150,787 _09175 CA264_09180: CA264_09180 - DNA-binding response regulator, at 2,150,931 to 2,151,581 _09180 Position (kb) 2149 2150 2151Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2148.953 kb on - strand, within CA264_09165at 2148.998 kb on + strand, within CA264_09165at 2148.999 kb on - strand, within CA264_09165at 2149.000 kb on + strand, within CA264_09165at 2149.000 kb on + strand, within CA264_09165at 2149.000 kb on + strand, within CA264_09165at 2149.001 kb on - strand, within CA264_09165at 2149.001 kb on - strand, within CA264_09165at 2149.001 kb on - strand, within CA264_09165at 2149.004 kb on + strand, within CA264_09165at 2149.004 kb on + strand, within CA264_09165at 2149.004 kb on + strand, within CA264_09165at 2149.007 kb on - strand, within CA264_09165at 2149.033 kb on + strand, within CA264_09165at 2149.257 kb on + strand, within CA264_09165at 2149.258 kb on - strand, within CA264_09165at 2149.356 kb on + strandat 2149.356 kb on + strandat 2149.356 kb on + strandat 2149.381 kb on + strandat 2149.412 kb on - strandat 2149.462 kb on - strandat 2149.463 kb on + strandat 2149.463 kb on + strandat 2149.464 kb on - strandat 2149.464 kb on - strandat 2149.464 kb on - strandat 2149.473 kb on + strandat 2149.478 kb on - strandat 2149.492 kb on + strandat 2149.517 kb on + strandat 2149.517 kb on + strandat 2149.517 kb on + strandat 2149.518 kb on - strandat 2149.518 kb on - strandat 2149.550 kb on - strand, within CA264_09170at 2149.633 kb on - strand, within CA264_09170at 2149.637 kb on - strand, within CA264_09170at 2149.637 kb on - strand, within CA264_09170at 2149.637 kb on - strand, within CA264_09170at 2149.650 kb on - strand, within CA264_09170at 2149.802 kb on + strand, within CA264_09170at 2149.806 kb on + strand, within CA264_09170at 2149.806 kb on + strand, within CA264_09170at 2149.806 kb on + strand, within CA264_09170at 2149.807 kb on - strand, within CA264_09170at 2149.807 kb on - strand, within CA264_09170at 2149.807 kb on - strand, within CA264_09170at 2149.825 kb on + strand, within CA264_09170at 2149.828 kb on + strand, within CA264_09170at 2149.828 kb on + strand, within CA264_09170at 2149.828 kb on + strand, within CA264_09170at 2149.885 kb on + strandat 2149.885 kb on + strandat 2149.885 kb on + strandat 2149.921 kb on - strandat 2149.940 kb on - strandat 2149.981 kb on - strandat 2150.092 kb on - strand, within CA264_09175at 2150.153 kb on - strand, within CA264_09175at 2150.192 kb on + strand, within CA264_09175at 2150.233 kb on + strand, within CA264_09175at 2150.369 kb on + strand, within CA264_09175at 2150.391 kb on + strand, within CA264_09175at 2150.519 kb on + strand, within CA264_09175at 2150.794 kb on + strandat 2150.795 kb on - strandat 2150.795 kb on - strandat 2150.795 kb on - strandat 2150.803 kb on + strandat 2150.804 kb on - strandat 2150.821 kb on + strandat 2150.821 kb on + strandat 2150.832 kb on - strandat 2150.832 kb on - strandat 2150.832 kb on - strandat 2150.895 kb on + strandat 2150.896 kb on - strandat 2150.928 kb on - strandat 2150.932 kb on + strandat 2151.072 kb on - strand, within CA264_09180at 2151.072 kb on - strand, within CA264_09180at 2151.074 kb on - strand, within CA264_09180at 2151.162 kb on - strand, within CA264_09180at 2151.163 kb on + strand, within CA264_09180at 2151.164 kb on - strand, within CA264_09180at 2151.208 kb on + strand, within CA264_09180at 2151.208 kb on + strand, within CA264_09180at 2151.208 kb on + strand, within CA264_09180at 2151.209 kb on - strand, within CA264_09180at 2151.313 kb on + strand, within CA264_09180at 2151.313 kb on + strand, within CA264_09180at 2151.314 kb on - strand, within CA264_09180at 2151.314 kb on - strand, within CA264_09180at 2151.346 kb on - strand, within CA264_09180at 2151.351 kb on + strand, within CA264_09180at 2151.352 kb on - strand, within CA264_09180at 2151.352 kb on - strand, within CA264_09180at 2151.429 kb on + strand, within CA264_09180at 2151.430 kb on - strand, within CA264_09180at 2151.499 kb on - strand, within CA264_09180at 2151.499 kb on - strand, within CA264_09180at 2151.576 kb on - strandat 2151.581 kb on + strandat 2151.593 kb on + strandat 2151.594 kb on - strandat 2151.594 kb on - strandat 2151.624 kb on - strandat 2151.627 kb on - strandat 2151.765 kb on - strandat 2151.767 kb on - strandat 2151.776 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,148,953 - CA264_09165 0.35 -0.3
2,148,998 + CA264_09165 0.43 +0.4
2,148,999 - CA264_09165 0.43 -0.0
2,149,000 + CA264_09165 0.43 +2.0
2,149,000 + CA264_09165 0.43 -0.2
2,149,000 + CA264_09165 0.43 +0.7
2,149,001 - CA264_09165 0.43 -1.1
2,149,001 - CA264_09165 0.43 -0.2
2,149,001 - CA264_09165 0.43 -1.8
2,149,004 + CA264_09165 0.44 +0.6
2,149,004 + CA264_09165 0.44 +1.2
2,149,004 + CA264_09165 0.44 +0.1
2,149,007 - CA264_09165 0.44 +1.0
2,149,033 + CA264_09165 0.49 +0.6
2,149,257 + CA264_09165 0.88 +0.2
2,149,258 - CA264_09165 0.88 -0.4
2,149,356 + +0.4
2,149,356 + +0.5
2,149,356 + +0.5
2,149,381 + +0.9
2,149,412 - -0.5
2,149,462 - -1.3
2,149,463 + -0.9
2,149,463 + +0.1
2,149,464 - -1.6
2,149,464 - +0.6
2,149,464 - -0.5
2,149,473 + +0.5
2,149,478 - +0.2
2,149,492 + +1.1
2,149,517 + -0.9
2,149,517 + +0.0
2,149,517 + +0.3
2,149,518 - -0.1
2,149,518 - -0.1
2,149,550 - CA264_09170 0.12 -0.7
2,149,633 - CA264_09170 0.32 -0.2
2,149,637 - CA264_09170 0.33 +1.1
2,149,637 - CA264_09170 0.33 +1.5
2,149,637 - CA264_09170 0.33 -0.4
2,149,650 - CA264_09170 0.36 -0.8
2,149,802 + CA264_09170 0.72 -0.4
2,149,806 + CA264_09170 0.73 -0.5
2,149,806 + CA264_09170 0.73 +0.2
2,149,806 + CA264_09170 0.73 +1.0
2,149,807 - CA264_09170 0.73 +2.9
2,149,807 - CA264_09170 0.73 +0.8
2,149,807 - CA264_09170 0.73 -0.1
2,149,825 + CA264_09170 0.77 +0.7
2,149,828 + CA264_09170 0.78 -0.1
2,149,828 + CA264_09170 0.78 +0.0
2,149,828 + CA264_09170 0.78 -0.4
2,149,885 + -0.1
2,149,885 + +0.6
2,149,885 + -0.5
2,149,921 - +0.1
2,149,940 - +0.3
2,149,981 - -1.1
2,150,092 - CA264_09175 0.19 -0.6
2,150,153 - CA264_09175 0.27 -0.6
2,150,192 + CA264_09175 0.31 -0.3
2,150,233 + CA264_09175 0.36 -0.5
2,150,369 + CA264_09175 0.52 +0.2
2,150,391 + CA264_09175 0.54 -0.9
2,150,519 + CA264_09175 0.69 -0.9
2,150,794 + -0.2
2,150,795 - -0.4
2,150,795 - +0.0
2,150,795 - +0.1
2,150,803 + +0.2
2,150,804 - -0.6
2,150,821 + -0.8
2,150,821 + -0.5
2,150,832 - -0.2
2,150,832 - -1.8
2,150,832 - -1.8
2,150,895 + -0.6
2,150,896 - -1.6
2,150,928 - +0.1
2,150,932 + -1.2
2,151,072 - CA264_09180 0.22 -0.7
2,151,072 - CA264_09180 0.22 +0.2
2,151,074 - CA264_09180 0.22 -0.7
2,151,162 - CA264_09180 0.35 +0.5
2,151,163 + CA264_09180 0.36 -1.4
2,151,164 - CA264_09180 0.36 +0.1
2,151,208 + CA264_09180 0.43 +1.0
2,151,208 + CA264_09180 0.43 +0.1
2,151,208 + CA264_09180 0.43 -0.7
2,151,209 - CA264_09180 0.43 -0.3
2,151,313 + CA264_09180 0.59 -0.1
2,151,313 + CA264_09180 0.59 -0.7
2,151,314 - CA264_09180 0.59 +0.5
2,151,314 - CA264_09180 0.59 +0.1
2,151,346 - CA264_09180 0.64 +0.1
2,151,351 + CA264_09180 0.65 -0.9
2,151,352 - CA264_09180 0.65 -0.1
2,151,352 - CA264_09180 0.65 -0.2
2,151,429 + CA264_09180 0.76 -0.8
2,151,430 - CA264_09180 0.77 -0.5
2,151,499 - CA264_09180 0.87 -0.0
2,151,499 - CA264_09180 0.87 +1.1
2,151,576 - -0.4
2,151,581 + +0.1
2,151,593 + +2.0
2,151,594 - -0.5
2,151,594 - +0.4
2,151,624 - -2.4
2,151,627 - -0.3
2,151,765 - -0.6
2,151,767 - -0.6
2,151,776 + +0.4

Or see this region's nucleotide sequence