Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09135

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09130 and CA264_09135 are separated by 228 nucleotidesCA264_09135 and CA264_09140 are separated by 180 nucleotides CA264_09130: CA264_09130 - hypothetical protein, at 2,138,661 to 2,140,955 _09130 CA264_09135: CA264_09135 - peptidase S8 and S53 subtilisin kexin sedolisin, at 2,141,184 to 2,142,713 _09135 CA264_09140: CA264_09140 - chloramphenicol acetyltransferase, at 2,142,894 to 2,143,544 _09140 Position (kb) 2141 2142 2143Strain fitness (log2 ratio) -2 -1 0 1 2at 2140.199 kb on + strand, within CA264_09130at 2140.234 kb on - strand, within CA264_09130at 2140.301 kb on - strand, within CA264_09130at 2140.421 kb on + strand, within CA264_09130at 2140.590 kb on + strand, within CA264_09130at 2140.591 kb on - strand, within CA264_09130at 2140.639 kb on - strand, within CA264_09130at 2140.695 kb on + strand, within CA264_09130at 2140.696 kb on - strand, within CA264_09130at 2140.756 kb on - strandat 2140.791 kb on - strandat 2140.792 kb on + strandat 2140.793 kb on - strandat 2140.793 kb on - strandat 2140.886 kb on - strandat 2140.987 kb on - strandat 2140.990 kb on + strandat 2141.017 kb on + strandat 2141.017 kb on + strandat 2141.078 kb on + strandat 2141.080 kb on + strandat 2141.083 kb on + strandat 2141.083 kb on + strandat 2141.084 kb on - strandat 2141.209 kb on + strandat 2141.224 kb on + strandat 2141.419 kb on + strand, within CA264_09135at 2141.420 kb on - strand, within CA264_09135at 2141.420 kb on - strand, within CA264_09135at 2141.453 kb on - strand, within CA264_09135at 2141.468 kb on + strand, within CA264_09135at 2141.598 kb on + strand, within CA264_09135at 2141.599 kb on - strand, within CA264_09135at 2141.639 kb on + strand, within CA264_09135at 2141.812 kb on + strand, within CA264_09135at 2141.813 kb on - strand, within CA264_09135at 2141.833 kb on + strand, within CA264_09135at 2141.834 kb on - strand, within CA264_09135at 2142.163 kb on - strand, within CA264_09135at 2142.163 kb on - strand, within CA264_09135at 2142.163 kb on - strand, within CA264_09135at 2142.314 kb on + strand, within CA264_09135at 2142.317 kb on + strand, within CA264_09135at 2142.336 kb on - strand, within CA264_09135at 2142.355 kb on - strand, within CA264_09135at 2142.396 kb on + strand, within CA264_09135at 2142.396 kb on + strand, within CA264_09135at 2142.396 kb on + strand, within CA264_09135at 2142.397 kb on - strand, within CA264_09135at 2142.397 kb on - strand, within CA264_09135at 2142.397 kb on - strand, within CA264_09135at 2142.397 kb on - strand, within CA264_09135at 2142.397 kb on - strand, within CA264_09135at 2142.400 kb on + strand, within CA264_09135at 2142.401 kb on - strand, within CA264_09135at 2142.401 kb on - strand, within CA264_09135at 2142.401 kb on - strand, within CA264_09135at 2142.401 kb on - strand, within CA264_09135at 2142.402 kb on + strand, within CA264_09135at 2142.428 kb on - strand, within CA264_09135at 2142.445 kb on - strand, within CA264_09135at 2142.445 kb on - strand, within CA264_09135at 2142.450 kb on + strand, within CA264_09135at 2142.451 kb on - strand, within CA264_09135at 2142.462 kb on + strand, within CA264_09135at 2142.462 kb on + strand, within CA264_09135at 2142.463 kb on - strand, within CA264_09135at 2142.463 kb on - strand, within CA264_09135at 2142.471 kb on - strand, within CA264_09135at 2142.507 kb on + strand, within CA264_09135at 2142.507 kb on + strand, within CA264_09135at 2142.511 kb on - strand, within CA264_09135at 2142.511 kb on - strand, within CA264_09135at 2142.531 kb on - strand, within CA264_09135at 2142.663 kb on + strandat 2142.663 kb on + strandat 2142.663 kb on + strandat 2142.664 kb on - strandat 2142.664 kb on - strandat 2142.666 kb on + strandat 2142.666 kb on + strandat 2142.723 kb on + strandat 2142.723 kb on + strandat 2142.724 kb on - strandat 2142.724 kb on - strandat 2142.724 kb on - strandat 2142.778 kb on + strandat 2142.798 kb on + strandat 2142.845 kb on - strandat 2142.875 kb on - strandat 2142.882 kb on - strandat 2142.906 kb on + strandat 2142.975 kb on - strand, within CA264_09140at 2143.006 kb on + strand, within CA264_09140at 2143.006 kb on + strand, within CA264_09140at 2143.023 kb on + strand, within CA264_09140at 2143.024 kb on - strand, within CA264_09140at 2143.143 kb on + strand, within CA264_09140at 2143.191 kb on - strand, within CA264_09140at 2143.290 kb on + strand, within CA264_09140at 2143.291 kb on - strand, within CA264_09140at 2143.291 kb on - strand, within CA264_09140at 2143.297 kb on - strand, within CA264_09140at 2143.297 kb on - strand, within CA264_09140at 2143.315 kb on + strand, within CA264_09140at 2143.367 kb on + strand, within CA264_09140at 2143.441 kb on + strand, within CA264_09140at 2143.460 kb on - strand, within CA264_09140at 2143.509 kb on + strandat 2143.522 kb on + strandat 2143.543 kb on - strandat 2143.551 kb on - strandat 2143.551 kb on - strandat 2143.556 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,140,199 + CA264_09130 0.67 +0.9
2,140,234 - CA264_09130 0.69 -0.1
2,140,301 - CA264_09130 0.71 +0.2
2,140,421 + CA264_09130 0.77 +0.2
2,140,590 + CA264_09130 0.84 +0.2
2,140,591 - CA264_09130 0.84 -0.7
2,140,639 - CA264_09130 0.86 -0.6
2,140,695 + CA264_09130 0.89 -0.4
2,140,696 - CA264_09130 0.89 +0.4
2,140,756 - -0.1
2,140,791 - -1.0
2,140,792 + +0.8
2,140,793 - +0.5
2,140,793 - -0.1
2,140,886 - -0.0
2,140,987 - +0.2
2,140,990 + +0.0
2,141,017 + +0.8
2,141,017 + -0.3
2,141,078 + -0.0
2,141,080 + -0.7
2,141,083 + +0.6
2,141,083 + +0.2
2,141,084 - -0.6
2,141,209 + +0.2
2,141,224 + -0.9
2,141,419 + CA264_09135 0.15 -0.4
2,141,420 - CA264_09135 0.15 +0.1
2,141,420 - CA264_09135 0.15 +0.4
2,141,453 - CA264_09135 0.18 -0.0
2,141,468 + CA264_09135 0.19 -1.3
2,141,598 + CA264_09135 0.27 +1.0
2,141,599 - CA264_09135 0.27 +0.3
2,141,639 + CA264_09135 0.30 +1.0
2,141,812 + CA264_09135 0.41 -0.8
2,141,813 - CA264_09135 0.41 -1.9
2,141,833 + CA264_09135 0.42 +0.7
2,141,834 - CA264_09135 0.42 -0.0
2,142,163 - CA264_09135 0.64 +0.6
2,142,163 - CA264_09135 0.64 +0.6
2,142,163 - CA264_09135 0.64 +0.2
2,142,314 + CA264_09135 0.74 -0.4
2,142,317 + CA264_09135 0.74 +0.2
2,142,336 - CA264_09135 0.75 -0.4
2,142,355 - CA264_09135 0.77 -1.3
2,142,396 + CA264_09135 0.79 -2.2
2,142,396 + CA264_09135 0.79 +0.1
2,142,396 + CA264_09135 0.79 +0.6
2,142,397 - CA264_09135 0.79 +0.6
2,142,397 - CA264_09135 0.79 -1.4
2,142,397 - CA264_09135 0.79 -0.4
2,142,397 - CA264_09135 0.79 -0.4
2,142,397 - CA264_09135 0.79 -0.3
2,142,400 + CA264_09135 0.79 -0.9
2,142,401 - CA264_09135 0.80 +0.4
2,142,401 - CA264_09135 0.80 +0.2
2,142,401 - CA264_09135 0.80 -0.2
2,142,401 - CA264_09135 0.80 +0.3
2,142,402 + CA264_09135 0.80 -0.4
2,142,428 - CA264_09135 0.81 -0.1
2,142,445 - CA264_09135 0.82 +0.5
2,142,445 - CA264_09135 0.82 +0.1
2,142,450 + CA264_09135 0.83 +0.8
2,142,451 - CA264_09135 0.83 -0.4
2,142,462 + CA264_09135 0.84 +0.6
2,142,462 + CA264_09135 0.84 -0.6
2,142,463 - CA264_09135 0.84 +0.6
2,142,463 - CA264_09135 0.84 -0.4
2,142,471 - CA264_09135 0.84 -1.1
2,142,507 + CA264_09135 0.86 -0.6
2,142,507 + CA264_09135 0.86 +0.2
2,142,511 - CA264_09135 0.87 +0.7
2,142,511 - CA264_09135 0.87 +0.1
2,142,531 - CA264_09135 0.88 +0.5
2,142,663 + -1.2
2,142,663 + -0.0
2,142,663 + +0.2
2,142,664 - -0.9
2,142,664 - -0.3
2,142,666 + +0.3
2,142,666 + -0.7
2,142,723 + -0.7
2,142,723 + -0.2
2,142,724 - -0.6
2,142,724 - +0.1
2,142,724 - -0.6
2,142,778 + -0.3
2,142,798 + +2.2
2,142,845 - -0.4
2,142,875 - -0.4
2,142,882 - -0.9
2,142,906 + +0.9
2,142,975 - CA264_09140 0.12 +0.2
2,143,006 + CA264_09140 0.17 +0.0
2,143,006 + CA264_09140 0.17 +1.1
2,143,023 + CA264_09140 0.20 -0.2
2,143,024 - CA264_09140 0.20 -0.2
2,143,143 + CA264_09140 0.38 -0.2
2,143,191 - CA264_09140 0.46 +0.1
2,143,290 + CA264_09140 0.61 +0.3
2,143,291 - CA264_09140 0.61 -1.2
2,143,291 - CA264_09140 0.61 +0.1
2,143,297 - CA264_09140 0.62 -0.2
2,143,297 - CA264_09140 0.62 +2.0
2,143,315 + CA264_09140 0.65 +0.1
2,143,367 + CA264_09140 0.73 -0.1
2,143,441 + CA264_09140 0.84 -0.1
2,143,460 - CA264_09140 0.87 -0.0
2,143,509 + -0.9
2,143,522 + -1.5
2,143,543 - -0.6
2,143,551 - +0.2
2,143,551 - +1.3
2,143,556 + +0.0

Or see this region's nucleotide sequence