Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08580

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08575 and CA264_08580 are separated by 65 nucleotidesCA264_08580 and CA264_08585 are separated by 50 nucleotidesCA264_08585 and CA264_08590 are separated by 178 nucleotidesCA264_08590 and CA264_08595 are separated by 167 nucleotides CA264_08575: CA264_08575 - hypothetical protein, at 1,991,640 to 1,992,404 _08575 CA264_08580: CA264_08580 - K+/H+ antiporter, at 1,992,470 to 1,993,927 _08580 CA264_08585: CA264_08585 - hypothetical protein, at 1,993,978 to 1,994,160 _08585 CA264_08590: CA264_08590 - hypothetical protein, at 1,994,339 to 1,994,731 _08590 CA264_08595: CA264_08595 - penicillin-binding protein, at 1,994,899 to 1,997,364 _08595 Position (kb) 1992 1993 1994Strain fitness (log2 ratio) -1 0 1 2 3at 1991.478 kb on + strandat 1991.479 kb on - strandat 1991.546 kb on - strandat 1991.548 kb on - strandat 1991.559 kb on + strandat 1991.601 kb on - strandat 1991.631 kb on + strandat 1991.637 kb on - strandat 1991.642 kb on - strandat 1991.680 kb on + strandat 1991.681 kb on - strandat 1991.695 kb on - strandat 1991.743 kb on + strand, within CA264_08575at 1991.744 kb on - strand, within CA264_08575at 1991.744 kb on - strand, within CA264_08575at 1991.881 kb on + strand, within CA264_08575at 1991.882 kb on - strand, within CA264_08575at 1991.890 kb on + strand, within CA264_08575at 1991.890 kb on + strand, within CA264_08575at 1991.890 kb on + strand, within CA264_08575at 1991.890 kb on + strand, within CA264_08575at 1991.894 kb on + strand, within CA264_08575at 1991.894 kb on + strand, within CA264_08575at 1991.894 kb on + strand, within CA264_08575at 1991.894 kb on + strand, within CA264_08575at 1991.895 kb on - strand, within CA264_08575at 1991.895 kb on - strand, within CA264_08575at 1991.895 kb on - strand, within CA264_08575at 1991.895 kb on - strand, within CA264_08575at 1991.896 kb on + strand, within CA264_08575at 1991.956 kb on + strand, within CA264_08575at 1992.224 kb on - strand, within CA264_08575at 1992.229 kb on - strand, within CA264_08575at 1992.281 kb on - strand, within CA264_08575at 1992.333 kb on + strandat 1992.364 kb on - strandat 1992.364 kb on - strandat 1992.537 kb on + strandat 1992.590 kb on + strandat 1992.700 kb on - strand, within CA264_08580at 1992.799 kb on + strand, within CA264_08580at 1992.867 kb on - strand, within CA264_08580at 1992.873 kb on + strand, within CA264_08580at 1992.873 kb on + strand, within CA264_08580at 1992.873 kb on + strand, within CA264_08580at 1992.924 kb on + strand, within CA264_08580at 1992.924 kb on + strand, within CA264_08580at 1992.925 kb on - strand, within CA264_08580at 1992.925 kb on - strand, within CA264_08580at 1992.996 kb on - strand, within CA264_08580at 1993.160 kb on + strand, within CA264_08580at 1993.176 kb on + strand, within CA264_08580at 1993.176 kb on + strand, within CA264_08580at 1993.177 kb on - strand, within CA264_08580at 1993.225 kb on + strand, within CA264_08580at 1993.258 kb on - strand, within CA264_08580at 1993.429 kb on - strand, within CA264_08580at 1993.445 kb on - strand, within CA264_08580at 1993.481 kb on - strand, within CA264_08580at 1993.481 kb on - strand, within CA264_08580at 1993.537 kb on + strand, within CA264_08580at 1993.593 kb on + strand, within CA264_08580at 1993.593 kb on + strand, within CA264_08580at 1993.594 kb on - strand, within CA264_08580at 1993.594 kb on - strand, within CA264_08580at 1993.594 kb on - strand, within CA264_08580at 1993.667 kb on + strand, within CA264_08580at 1993.868 kb on + strandat 1993.868 kb on + strandat 1993.868 kb on + strandat 1993.886 kb on + strandat 1993.887 kb on - strandat 1993.899 kb on - strandat 1993.899 kb on - strandat 1993.918 kb on + strandat 1993.919 kb on - strandat 1993.927 kb on + strandat 1993.927 kb on + strandat 1993.948 kb on - strandat 1993.948 kb on - strandat 1993.950 kb on + strandat 1993.975 kb on - strandat 1993.994 kb on - strandat 1994.020 kb on + strand, within CA264_08585at 1994.037 kb on + strand, within CA264_08585at 1994.038 kb on - strand, within CA264_08585at 1994.038 kb on - strand, within CA264_08585at 1994.069 kb on + strand, within CA264_08585at 1994.072 kb on + strand, within CA264_08585at 1994.125 kb on - strand, within CA264_08585at 1994.125 kb on - strand, within CA264_08585at 1994.131 kb on + strand, within CA264_08585at 1994.132 kb on - strand, within CA264_08585at 1994.134 kb on - strand, within CA264_08585at 1994.134 kb on - strand, within CA264_08585at 1994.134 kb on - strand, within CA264_08585at 1994.134 kb on - strand, within CA264_08585at 1994.172 kb on - strandat 1994.223 kb on - strandat 1994.357 kb on + strandat 1994.358 kb on - strandat 1994.358 kb on - strandat 1994.410 kb on + strand, within CA264_08590at 1994.411 kb on - strand, within CA264_08590at 1994.411 kb on - strand, within CA264_08590at 1994.546 kb on + strand, within CA264_08590at 1994.629 kb on - strand, within CA264_08590at 1994.691 kb on + strand, within CA264_08590at 1994.695 kb on + strandat 1994.695 kb on + strandat 1994.716 kb on + strandat 1994.753 kb on + strandat 1994.759 kb on - strandat 1994.908 kb on - strandat 1994.908 kb on - strandat 1994.916 kb on + strandat 1994.916 kb on + strandat 1994.916 kb on + strandat 1994.917 kb on - strandat 1994.921 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,991,478 + -0.4
1,991,479 - -0.6
1,991,546 - -0.6
1,991,548 - +0.7
1,991,559 + -1.6
1,991,601 - +0.0
1,991,631 + +0.3
1,991,637 - -1.1
1,991,642 - -0.3
1,991,680 + +0.1
1,991,681 - -0.2
1,991,695 - +1.0
1,991,743 + CA264_08575 0.13 -0.1
1,991,744 - CA264_08575 0.14 +0.1
1,991,744 - CA264_08575 0.14 -0.2
1,991,881 + CA264_08575 0.32 +0.0
1,991,882 - CA264_08575 0.32 -0.7
1,991,890 + CA264_08575 0.33 -0.7
1,991,890 + CA264_08575 0.33 -0.4
1,991,890 + CA264_08575 0.33 +0.8
1,991,890 + CA264_08575 0.33 -0.3
1,991,894 + CA264_08575 0.33 +0.2
1,991,894 + CA264_08575 0.33 +0.3
1,991,894 + CA264_08575 0.33 +0.3
1,991,894 + CA264_08575 0.33 -0.2
1,991,895 - CA264_08575 0.33 +0.2
1,991,895 - CA264_08575 0.33 +0.6
1,991,895 - CA264_08575 0.33 -0.8
1,991,895 - CA264_08575 0.33 -0.6
1,991,896 + CA264_08575 0.33 -1.0
1,991,956 + CA264_08575 0.41 -0.4
1,992,224 - CA264_08575 0.76 +0.9
1,992,229 - CA264_08575 0.77 +0.3
1,992,281 - CA264_08575 0.84 -1.5
1,992,333 + +0.2
1,992,364 - -0.1
1,992,364 - -1.5
1,992,537 + -0.0
1,992,590 + +0.2
1,992,700 - CA264_08580 0.16 +1.0
1,992,799 + CA264_08580 0.23 +2.9
1,992,867 - CA264_08580 0.27 +0.4
1,992,873 + CA264_08580 0.28 -0.0
1,992,873 + CA264_08580 0.28 +0.4
1,992,873 + CA264_08580 0.28 -0.4
1,992,924 + CA264_08580 0.31 +0.4
1,992,924 + CA264_08580 0.31 +0.4
1,992,925 - CA264_08580 0.31 +0.1
1,992,925 - CA264_08580 0.31 -0.3
1,992,996 - CA264_08580 0.36 -0.9
1,993,160 + CA264_08580 0.47 +0.1
1,993,176 + CA264_08580 0.48 +0.1
1,993,176 + CA264_08580 0.48 +0.1
1,993,177 - CA264_08580 0.48 -0.3
1,993,225 + CA264_08580 0.52 +1.4
1,993,258 - CA264_08580 0.54 +1.2
1,993,429 - CA264_08580 0.66 +0.1
1,993,445 - CA264_08580 0.67 -0.8
1,993,481 - CA264_08580 0.69 +0.2
1,993,481 - CA264_08580 0.69 +0.1
1,993,537 + CA264_08580 0.73 -0.4
1,993,593 + CA264_08580 0.77 -0.6
1,993,593 + CA264_08580 0.77 -0.1
1,993,594 - CA264_08580 0.77 +0.1
1,993,594 - CA264_08580 0.77 -0.4
1,993,594 - CA264_08580 0.77 -1.2
1,993,667 + CA264_08580 0.82 +0.5
1,993,868 + -1.1
1,993,868 + +0.1
1,993,868 + +0.4
1,993,886 + -0.6
1,993,887 - +0.5
1,993,899 - +0.6
1,993,899 - -0.9
1,993,918 + -0.6
1,993,919 - +0.4
1,993,927 + +0.5
1,993,927 + -0.4
1,993,948 - +0.2
1,993,948 - -0.3
1,993,950 + +0.6
1,993,975 - -0.1
1,993,994 - -0.1
1,994,020 + CA264_08585 0.23 +0.2
1,994,037 + CA264_08585 0.32 -0.1
1,994,038 - CA264_08585 0.33 -0.1
1,994,038 - CA264_08585 0.33 -0.7
1,994,069 + CA264_08585 0.50 +0.3
1,994,072 + CA264_08585 0.51 -0.2
1,994,125 - CA264_08585 0.80 -0.3
1,994,125 - CA264_08585 0.80 -0.7
1,994,131 + CA264_08585 0.84 -0.4
1,994,132 - CA264_08585 0.84 +2.0
1,994,134 - CA264_08585 0.85 -1.0
1,994,134 - CA264_08585 0.85 -0.3
1,994,134 - CA264_08585 0.85 +0.1
1,994,134 - CA264_08585 0.85 +0.6
1,994,172 - +0.2
1,994,223 - -0.6
1,994,357 + +1.0
1,994,358 - +0.6
1,994,358 - -1.0
1,994,410 + CA264_08590 0.18 +3.2
1,994,411 - CA264_08590 0.18 -0.0
1,994,411 - CA264_08590 0.18 +0.5
1,994,546 + CA264_08590 0.53 -0.7
1,994,629 - CA264_08590 0.74 -0.0
1,994,691 + CA264_08590 0.90 -0.4
1,994,695 + -0.2
1,994,695 + +0.1
1,994,716 + +0.0
1,994,753 + +0.7
1,994,759 - +0.9
1,994,908 - -0.6
1,994,908 - -0.2
1,994,916 + -0.2
1,994,916 + -0.1
1,994,916 + -0.2
1,994,917 - -0.5
1,994,921 + +0.4

Or see this region's nucleotide sequence