Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08370

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08365 and CA264_08370 are separated by 749 nucleotidesCA264_08370 and CA264_08375 are separated by 62 nucleotidesCA264_08375 and CA264_08380 are separated by 3 nucleotides CA264_08365: CA264_08365 - hypothetical protein, at 1,932,531 to 1,933,166 _08365 CA264_08370: CA264_08370 - WYL domain-containing protein, at 1,933,916 to 1,934,854 _08370 CA264_08375: CA264_08375 - CRISPR-associated protein Cas6, at 1,934,917 to 1,935,591 _08375 CA264_08380: CA264_08380 - hypothetical protein, at 1,935,595 to 1,936,395 _08380 Position (kb) 1933 1934 1935Strain fitness (log2 ratio) -2 -1 0 1at 1932.916 kb on + strand, within CA264_08365at 1932.943 kb on + strand, within CA264_08365at 1933.003 kb on + strand, within CA264_08365at 1933.020 kb on + strand, within CA264_08365at 1933.020 kb on + strand, within CA264_08365at 1933.021 kb on - strand, within CA264_08365at 1933.076 kb on + strand, within CA264_08365at 1933.077 kb on - strand, within CA264_08365at 1933.088 kb on + strand, within CA264_08365at 1933.155 kb on - strandat 1933.155 kb on - strandat 1933.180 kb on - strandat 1933.181 kb on + strandat 1933.182 kb on - strandat 1933.198 kb on + strandat 1933.198 kb on + strandat 1933.198 kb on + strandat 1933.199 kb on - strandat 1933.270 kb on - strandat 1933.293 kb on + strandat 1933.299 kb on - strandat 1933.305 kb on - strandat 1933.329 kb on - strandat 1933.357 kb on - strandat 1933.373 kb on - strandat 1933.373 kb on - strandat 1933.373 kb on - strandat 1933.375 kb on + strandat 1933.376 kb on - strandat 1933.376 kb on - strandat 1933.376 kb on - strandat 1933.386 kb on + strandat 1933.720 kb on + strandat 1933.721 kb on - strandat 1933.752 kb on + strandat 1933.753 kb on - strandat 1933.772 kb on + strandat 1933.800 kb on + strandat 1933.829 kb on - strandat 1933.829 kb on - strandat 1933.831 kb on + strandat 1933.832 kb on - strandat 1933.915 kb on + strandat 1933.927 kb on + strandat 1933.927 kb on + strandat 1933.930 kb on + strandat 1933.930 kb on + strandat 1933.931 kb on - strandat 1933.947 kb on + strandat 1933.947 kb on + strandat 1933.947 kb on + strandat 1934.098 kb on + strand, within CA264_08370at 1934.099 kb on - strand, within CA264_08370at 1934.102 kb on + strand, within CA264_08370at 1934.123 kb on + strand, within CA264_08370at 1934.123 kb on + strand, within CA264_08370at 1934.124 kb on - strand, within CA264_08370at 1934.124 kb on - strand, within CA264_08370at 1934.247 kb on - strand, within CA264_08370at 1934.342 kb on + strand, within CA264_08370at 1934.383 kb on - strand, within CA264_08370at 1934.383 kb on - strand, within CA264_08370at 1934.383 kb on - strand, within CA264_08370at 1934.421 kb on - strand, within CA264_08370at 1934.628 kb on - strand, within CA264_08370at 1934.633 kb on - strand, within CA264_08370at 1934.633 kb on - strand, within CA264_08370at 1934.633 kb on - strand, within CA264_08370at 1934.739 kb on + strand, within CA264_08370at 1934.740 kb on - strand, within CA264_08370at 1934.740 kb on - strand, within CA264_08370at 1934.916 kb on + strandat 1934.931 kb on + strandat 1934.944 kb on - strandat 1935.060 kb on - strand, within CA264_08375at 1935.128 kb on - strand, within CA264_08375at 1935.128 kb on - strand, within CA264_08375at 1935.128 kb on - strand, within CA264_08375at 1935.139 kb on + strand, within CA264_08375at 1935.146 kb on + strand, within CA264_08375at 1935.162 kb on + strand, within CA264_08375at 1935.164 kb on + strand, within CA264_08375at 1935.165 kb on - strand, within CA264_08375at 1935.213 kb on - strand, within CA264_08375at 1935.272 kb on + strand, within CA264_08375at 1935.286 kb on - strand, within CA264_08375at 1935.296 kb on + strand, within CA264_08375at 1935.451 kb on - strand, within CA264_08375at 1935.464 kb on + strand, within CA264_08375at 1935.465 kb on - strand, within CA264_08375at 1935.481 kb on - strand, within CA264_08375at 1935.490 kb on - strand, within CA264_08375at 1935.490 kb on - strand, within CA264_08375at 1935.490 kb on - strand, within CA264_08375at 1935.507 kb on - strand, within CA264_08375at 1935.522 kb on + strand, within CA264_08375at 1935.562 kb on - strandat 1935.637 kb on + strandat 1935.671 kb on + strandat 1935.671 kb on + strandat 1935.706 kb on - strand, within CA264_08380at 1935.843 kb on + strand, within CA264_08380

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,932,916 + CA264_08365 0.61 -0.6
1,932,943 + CA264_08365 0.65 -1.2
1,933,003 + CA264_08365 0.74 -0.1
1,933,020 + CA264_08365 0.77 -1.1
1,933,020 + CA264_08365 0.77 -0.1
1,933,021 - CA264_08365 0.77 +0.7
1,933,076 + CA264_08365 0.86 -1.5
1,933,077 - CA264_08365 0.86 -0.5
1,933,088 + CA264_08365 0.88 -0.4
1,933,155 - -0.4
1,933,155 - -1.0
1,933,180 - +0.1
1,933,181 + -1.1
1,933,182 - -1.6
1,933,198 + -0.9
1,933,198 + -1.8
1,933,198 + -1.7
1,933,199 - +0.3
1,933,270 - +0.4
1,933,293 + -2.5
1,933,299 - -0.6
1,933,305 - -0.6
1,933,329 - -0.8
1,933,357 - -0.3
1,933,373 - -0.1
1,933,373 - -0.5
1,933,373 - -0.3
1,933,375 + -1.5
1,933,376 - -0.8
1,933,376 - -0.6
1,933,376 - -0.4
1,933,386 + +0.5
1,933,720 + -0.7
1,933,721 - -0.4
1,933,752 + -1.0
1,933,753 - -0.3
1,933,772 + -1.3
1,933,800 + -1.0
1,933,829 - -1.4
1,933,829 - -2.0
1,933,831 + -1.6
1,933,832 - -1.1
1,933,915 + -0.4
1,933,927 + +0.1
1,933,927 + +0.3
1,933,930 + -0.5
1,933,930 + -0.8
1,933,931 - -0.4
1,933,947 + -0.5
1,933,947 + +0.3
1,933,947 + -0.6
1,934,098 + CA264_08370 0.19 -0.6
1,934,099 - CA264_08370 0.19 -2.0
1,934,102 + CA264_08370 0.20 -1.0
1,934,123 + CA264_08370 0.22 -0.8
1,934,123 + CA264_08370 0.22 +0.6
1,934,124 - CA264_08370 0.22 -1.2
1,934,124 - CA264_08370 0.22 -0.3
1,934,247 - CA264_08370 0.35 -0.3
1,934,342 + CA264_08370 0.45 -1.4
1,934,383 - CA264_08370 0.50 -0.4
1,934,383 - CA264_08370 0.50 +0.4
1,934,383 - CA264_08370 0.50 -1.3
1,934,421 - CA264_08370 0.54 -0.4
1,934,628 - CA264_08370 0.76 -0.7
1,934,633 - CA264_08370 0.76 -1.0
1,934,633 - CA264_08370 0.76 -0.9
1,934,633 - CA264_08370 0.76 -0.9
1,934,739 + CA264_08370 0.88 -1.3
1,934,740 - CA264_08370 0.88 -0.4
1,934,740 - CA264_08370 0.88 -0.8
1,934,916 + -0.8
1,934,931 + -0.6
1,934,944 - -0.9
1,935,060 - CA264_08375 0.21 -0.5
1,935,128 - CA264_08375 0.31 -0.8
1,935,128 - CA264_08375 0.31 +0.4
1,935,128 - CA264_08375 0.31 -0.4
1,935,139 + CA264_08375 0.33 +0.1
1,935,146 + CA264_08375 0.34 -0.4
1,935,162 + CA264_08375 0.36 +0.0
1,935,164 + CA264_08375 0.37 -1.3
1,935,165 - CA264_08375 0.37 -0.5
1,935,213 - CA264_08375 0.44 -0.3
1,935,272 + CA264_08375 0.53 -2.6
1,935,286 - CA264_08375 0.55 -0.7
1,935,296 + CA264_08375 0.56 -0.6
1,935,451 - CA264_08375 0.79 +0.9
1,935,464 + CA264_08375 0.81 -0.4
1,935,465 - CA264_08375 0.81 -0.6
1,935,481 - CA264_08375 0.84 -0.1
1,935,490 - CA264_08375 0.85 -0.1
1,935,490 - CA264_08375 0.85 -0.8
1,935,490 - CA264_08375 0.85 +0.4
1,935,507 - CA264_08375 0.87 +0.4
1,935,522 + CA264_08375 0.90 +1.4
1,935,562 - +0.1
1,935,637 + -1.4
1,935,671 + -1.3
1,935,671 + +0.0
1,935,706 - CA264_08380 0.14 +0.4
1,935,843 + CA264_08380 0.31 -0.5

Or see this region's nucleotide sequence