Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03760

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03755 and CA264_03760 are separated by 579 nucleotidesCA264_03760 and CA264_03765 are separated by 91 nucleotidesCA264_03765 and CA264_03770 are separated by 178 nucleotides CA264_03755: CA264_03755 - hypothetical protein, at 880,636 to 882,687 _03755 CA264_03760: CA264_03760 - hypothetical protein, at 883,267 to 883,659 _03760 CA264_03765: CA264_03765 - tRNA-Glu, at 883,751 to 883,825 _03765 CA264_03770: CA264_03770 - type I glyceraldehyde-3-phosphate dehydrogenase, at 884,004 to 884,996 _03770 Position (kb) 883 884Strain fitness (log2 ratio) -3 -2 -1 0 1at 882.297 kb on + strand, within CA264_03755at 882.297 kb on + strand, within CA264_03755at 882.312 kb on + strand, within CA264_03755at 882.312 kb on + strand, within CA264_03755at 882.312 kb on + strand, within CA264_03755at 882.313 kb on - strand, within CA264_03755at 882.344 kb on - strand, within CA264_03755at 882.356 kb on + strand, within CA264_03755at 882.357 kb on - strand, within CA264_03755at 882.437 kb on - strand, within CA264_03755at 882.460 kb on - strand, within CA264_03755at 882.475 kb on + strand, within CA264_03755at 882.476 kb on - strand, within CA264_03755at 882.521 kb on - strandat 882.547 kb on + strandat 882.547 kb on + strandat 882.548 kb on - strandat 882.553 kb on - strandat 882.672 kb on + strandat 882.673 kb on - strandat 882.705 kb on - strandat 882.721 kb on + strandat 882.725 kb on + strandat 882.725 kb on + strandat 882.725 kb on + strandat 882.725 kb on + strandat 882.726 kb on - strandat 882.776 kb on + strandat 882.779 kb on + strandat 882.781 kb on + strandat 882.781 kb on + strandat 882.824 kb on + strandat 882.848 kb on + strandat 882.855 kb on + strandat 882.917 kb on + strandat 882.936 kb on + strandat 882.943 kb on - strandat 883.021 kb on - strandat 883.024 kb on + strandat 883.044 kb on + strandat 883.045 kb on - strandat 883.045 kb on - strandat 883.045 kb on - strandat 883.048 kb on + strandat 883.105 kb on - strandat 883.107 kb on - strandat 883.169 kb on + strandat 883.210 kb on + strandat 883.261 kb on + strandat 883.261 kb on + strandat 883.294 kb on + strandat 883.294 kb on + strandat 883.296 kb on + strandat 883.302 kb on + strandat 883.323 kb on + strand, within CA264_03760at 883.343 kb on + strand, within CA264_03760at 883.343 kb on + strand, within CA264_03760at 883.344 kb on - strand, within CA264_03760at 883.372 kb on + strand, within CA264_03760at 883.372 kb on + strand, within CA264_03760at 883.373 kb on - strand, within CA264_03760at 883.394 kb on - strand, within CA264_03760at 883.409 kb on + strand, within CA264_03760at 883.410 kb on - strand, within CA264_03760at 883.410 kb on - strand, within CA264_03760at 883.414 kb on + strand, within CA264_03760at 883.439 kb on - strand, within CA264_03760at 883.516 kb on - strand, within CA264_03760at 883.517 kb on + strand, within CA264_03760at 883.517 kb on + strand, within CA264_03760at 883.517 kb on + strand, within CA264_03760at 883.517 kb on + strand, within CA264_03760at 883.518 kb on - strand, within CA264_03760at 883.564 kb on - strand, within CA264_03760at 883.589 kb on - strand, within CA264_03760at 883.658 kb on - strandat 883.665 kb on - strandat 883.672 kb on - strandat 883.672 kb on - strandat 883.888 kb on + strandat 883.912 kb on + strandat 883.951 kb on + strandat 883.952 kb on - strandat 883.956 kb on + strandat 883.956 kb on + strandat 883.957 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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882,297 + CA264_03755 0.81 +0.1
882,297 + CA264_03755 0.81 +0.1
882,312 + CA264_03755 0.82 +0.6
882,312 + CA264_03755 0.82 -0.1
882,312 + CA264_03755 0.82 -0.0
882,313 - CA264_03755 0.82 -0.5
882,344 - CA264_03755 0.83 -0.1
882,356 + CA264_03755 0.84 -1.9
882,357 - CA264_03755 0.84 -0.2
882,437 - CA264_03755 0.88 -0.0
882,460 - CA264_03755 0.89 -1.1
882,475 + CA264_03755 0.90 -0.6
882,476 - CA264_03755 0.90 -1.4
882,521 - -0.3
882,547 + -0.6
882,547 + -2.6
882,548 - -0.9
882,553 - -0.2
882,672 + -0.0
882,673 - -0.1
882,705 - +0.2
882,721 + +0.8
882,725 + +0.2
882,725 + +0.8
882,725 + -2.0
882,725 + -0.2
882,726 - -0.8
882,776 + -1.4
882,779 + -0.3
882,781 + -1.1
882,781 + -1.4
882,824 + -2.0
882,848 + -0.5
882,855 + -2.1
882,917 + -1.0
882,936 + +0.7
882,943 - -1.2
883,021 - -2.1
883,024 + -0.9
883,044 + +1.4
883,045 - -0.8
883,045 - -2.3
883,045 - -1.1
883,048 + -1.2
883,105 - -0.5
883,107 - -2.4
883,169 + -0.3
883,210 + -2.2
883,261 + -0.6
883,261 + -0.6
883,294 + -0.4
883,294 + -0.3
883,296 + -0.2
883,302 + +0.3
883,323 + CA264_03760 0.14 -1.3
883,343 + CA264_03760 0.19 -0.6
883,343 + CA264_03760 0.19 -0.7
883,344 - CA264_03760 0.20 -2.0
883,372 + CA264_03760 0.27 -0.1
883,372 + CA264_03760 0.27 -0.4
883,373 - CA264_03760 0.27 -2.8
883,394 - CA264_03760 0.32 -1.8
883,409 + CA264_03760 0.36 -0.1
883,410 - CA264_03760 0.36 -1.7
883,410 - CA264_03760 0.36 -1.1
883,414 + CA264_03760 0.37 -0.9
883,439 - CA264_03760 0.44 -2.4
883,516 - CA264_03760 0.63 -1.7
883,517 + CA264_03760 0.64 -0.3
883,517 + CA264_03760 0.64 +0.1
883,517 + CA264_03760 0.64 -0.1
883,517 + CA264_03760 0.64 +0.1
883,518 - CA264_03760 0.64 -1.1
883,564 - CA264_03760 0.76 -1.6
883,589 - CA264_03760 0.82 -2.0
883,658 - -1.0
883,665 - +0.4
883,672 - -1.1
883,672 - +0.1
883,888 + +0.2
883,912 + -0.4
883,951 + +0.8
883,952 - +1.3
883,956 + +1.0
883,956 + -0.7
883,957 - -0.1

Or see this region's nucleotide sequence