Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03640

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03630 and CA264_03635 are separated by 212 nucleotidesCA264_03635 and CA264_03640 are separated by 195 nucleotidesCA264_03640 and CA264_03645 are separated by 183 nucleotides CA264_03630: CA264_03630 - PAS domain-containing sensor histidine kinase, at 846,043 to 848,001 _03630 CA264_03635: CA264_03635 - DoxX family protein, at 848,214 to 848,666 _03635 CA264_03640: CA264_03640 - TetR family transcriptional regulator, at 848,862 to 849,434 _03640 CA264_03645: CA264_03645 - hypothetical protein, at 849,618 to 850,949 _03645 Position (kb) 848 849 850Strain fitness (log2 ratio) -2 -1 0 1at 847.914 kb on + strandat 847.915 kb on - strandat 847.918 kb on - strandat 847.918 kb on - strandat 847.929 kb on + strandat 847.960 kb on + strandat 847.961 kb on - strandat 847.961 kb on - strandat 848.089 kb on - strandat 848.105 kb on + strandat 848.128 kb on + strandat 848.147 kb on - strandat 848.150 kb on + strandat 848.150 kb on + strandat 848.151 kb on - strandat 848.198 kb on - strandat 848.282 kb on + strand, within CA264_03635at 848.438 kb on + strand, within CA264_03635at 848.552 kb on + strand, within CA264_03635at 848.552 kb on + strand, within CA264_03635at 848.553 kb on - strand, within CA264_03635at 848.553 kb on - strand, within CA264_03635at 848.553 kb on - strand, within CA264_03635at 848.553 kb on - strand, within CA264_03635at 848.562 kb on + strand, within CA264_03635at 848.562 kb on + strand, within CA264_03635at 848.692 kb on - strandat 848.695 kb on + strandat 848.696 kb on - strandat 848.696 kb on - strandat 848.696 kb on - strandat 848.699 kb on + strandat 848.700 kb on - strandat 848.700 kb on - strandat 848.700 kb on - strandat 848.700 kb on - strandat 848.707 kb on + strandat 848.707 kb on + strandat 848.809 kb on + strandat 848.810 kb on - strandat 848.810 kb on - strandat 848.818 kb on - strandat 848.939 kb on + strand, within CA264_03640at 848.939 kb on + strand, within CA264_03640at 848.940 kb on - strand, within CA264_03640at 848.940 kb on - strand, within CA264_03640at 849.113 kb on + strand, within CA264_03640at 849.141 kb on + strand, within CA264_03640at 849.143 kb on + strand, within CA264_03640at 849.183 kb on - strand, within CA264_03640at 849.183 kb on - strand, within CA264_03640at 849.200 kb on + strand, within CA264_03640at 849.292 kb on + strand, within CA264_03640at 849.454 kb on + strandat 849.455 kb on - strandat 849.513 kb on + strandat 849.593 kb on - strandat 849.615 kb on + strandat 849.616 kb on - strandat 849.643 kb on + strandat 849.736 kb on + strandat 849.852 kb on + strand, within CA264_03645at 849.853 kb on - strand, within CA264_03645at 849.872 kb on + strand, within CA264_03645at 849.873 kb on - strand, within CA264_03645at 849.899 kb on + strand, within CA264_03645at 849.900 kb on - strand, within CA264_03645at 849.900 kb on - strand, within CA264_03645at 849.908 kb on + strand, within CA264_03645at 849.924 kb on + strand, within CA264_03645at 850.058 kb on - strand, within CA264_03645at 850.146 kb on + strand, within CA264_03645at 850.167 kb on + strand, within CA264_03645at 850.167 kb on + strand, within CA264_03645at 850.168 kb on - strand, within CA264_03645at 850.168 kb on - strand, within CA264_03645at 850.183 kb on + strand, within CA264_03645at 850.278 kb on + strand, within CA264_03645at 850.363 kb on + strand, within CA264_03645at 850.363 kb on + strand, within CA264_03645

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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847,914 + -0.1
847,915 - -0.3
847,918 - +0.1
847,918 - -1.1
847,929 + +0.0
847,960 + -1.3
847,961 - +1.0
847,961 - +0.1
848,089 - +0.3
848,105 + -0.7
848,128 + -0.9
848,147 - -0.7
848,150 + -0.9
848,150 + -0.8
848,151 - +0.1
848,198 - +0.7
848,282 + CA264_03635 0.15 -0.0
848,438 + CA264_03635 0.49 -0.6
848,552 + CA264_03635 0.75 -0.3
848,552 + CA264_03635 0.75 -1.3
848,553 - CA264_03635 0.75 -0.9
848,553 - CA264_03635 0.75 -0.4
848,553 - CA264_03635 0.75 -0.1
848,553 - CA264_03635 0.75 -0.1
848,562 + CA264_03635 0.77 -1.2
848,562 + CA264_03635 0.77 -0.2
848,692 - -0.3
848,695 + -0.0
848,696 - -0.1
848,696 - -0.2
848,696 - -0.1
848,699 + -1.0
848,700 - +0.3
848,700 - -1.3
848,700 - +1.5
848,700 - +0.2
848,707 + -1.2
848,707 + -1.4
848,809 + +1.0
848,810 - +0.1
848,810 - -0.1
848,818 - -0.9
848,939 + CA264_03640 0.13 -1.0
848,939 + CA264_03640 0.13 -1.6
848,940 - CA264_03640 0.14 +0.7
848,940 - CA264_03640 0.14 -0.7
849,113 + CA264_03640 0.44 +0.3
849,141 + CA264_03640 0.49 -0.3
849,143 + CA264_03640 0.49 -1.6
849,183 - CA264_03640 0.56 -1.6
849,183 - CA264_03640 0.56 +0.2
849,200 + CA264_03640 0.59 -2.0
849,292 + CA264_03640 0.75 -2.1
849,454 + -1.8
849,455 - +0.1
849,513 + -0.8
849,593 - -1.4
849,615 + +0.7
849,616 - +0.2
849,643 + -0.3
849,736 + +0.1
849,852 + CA264_03645 0.18 -0.6
849,853 - CA264_03645 0.18 +0.8
849,872 + CA264_03645 0.19 -0.3
849,873 - CA264_03645 0.19 +0.1
849,899 + CA264_03645 0.21 +0.4
849,900 - CA264_03645 0.21 +0.8
849,900 - CA264_03645 0.21 +0.5
849,908 + CA264_03645 0.22 +0.8
849,924 + CA264_03645 0.23 -0.0
850,058 - CA264_03645 0.33 -0.1
850,146 + CA264_03645 0.40 +0.6
850,167 + CA264_03645 0.41 -0.7
850,167 + CA264_03645 0.41 -0.2
850,168 - CA264_03645 0.41 +0.4
850,168 - CA264_03645 0.41 +0.7
850,183 + CA264_03645 0.42 -0.7
850,278 + CA264_03645 0.50 +0.0
850,363 + CA264_03645 0.56 +1.1
850,363 + CA264_03645 0.56 -0.3

Or see this region's nucleotide sequence