Experiment: Spectinomycin 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03205 and PS417_03210 are separated by 194 nucleotides PS417_03210 and PS417_03215 are separated by 0 nucleotides
PS417_03205: PS417_03205 - adenine deaminase, at 732,667 to 733,620
_03205
PS417_03210: PS417_03210 - calcium:proton antiporter, at 733,815 to 734,906
_03210
PS417_03215: PS417_03215 - 8-oxoguanine deaminase, at 734,907 to 736,262
_03215
Position (kb) 733
734
735 Strain fitness (log2 ratio) -2
-1
0
1 at 733.013 kb on + strand, within PS417_03205 at 733.014 kb on - strand, within PS417_03205 at 733.397 kb on + strand, within PS417_03205 at 733.397 kb on + strand, within PS417_03205 at 733.397 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.437 kb on - strand, within PS417_03205 at 733.437 kb on - strand, within PS417_03205 at 733.439 kb on + strand, within PS417_03205 at 733.440 kb on - strand, within PS417_03205 at 733.464 kb on + strand, within PS417_03205 at 733.476 kb on - strand, within PS417_03205 at 733.736 kb on + strand at 733.737 kb on - strand at 733.774 kb on + strand at 733.802 kb on + strand at 733.802 kb on + strand at 734.124 kb on + strand, within PS417_03210 at 734.125 kb on - strand, within PS417_03210 at 734.230 kb on - strand, within PS417_03210 at 734.343 kb on + strand, within PS417_03210 at 734.343 kb on + strand, within PS417_03210 at 734.343 kb on + strand, within PS417_03210 at 734.343 kb on + strand at 734.343 kb on + strand, within PS417_03210 at 734.343 kb on + strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.344 kb on - strand, within PS417_03210 at 734.382 kb on + strand, within PS417_03210 at 734.382 kb on + strand, within PS417_03210 at 734.394 kb on + strand, within PS417_03210 at 734.667 kb on - strand, within PS417_03210 at 734.667 kb on - strand, within PS417_03210 at 734.667 kb on - strand, within PS417_03210 at 734.880 kb on - strand at 734.905 kb on - strand at 735.192 kb on + strand, within PS417_03215 at 735.241 kb on + strand, within PS417_03215 at 735.241 kb on + strand, within PS417_03215 at 735.242 kb on - strand, within PS417_03215 at 735.242 kb on - strand, within PS417_03215 at 735.496 kb on + strand, within PS417_03215 at 735.496 kb on + strand, within PS417_03215 at 735.497 kb on - strand, within PS417_03215 at 735.497 kb on - strand, within PS417_03215 at 735.691 kb on + strand, within PS417_03215 at 735.692 kb on - strand, within PS417_03215 at 735.837 kb on + strand, within PS417_03215 at 735.838 kb on - strand, within PS417_03215 at 735.843 kb on + strand, within PS417_03215 at 735.880 kb on + strand, within PS417_03215 at 735.880 kb on + strand, within PS417_03215 at 735.881 kb on - strand, within PS417_03215
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.4 mg/ml remove 733,013 + PS417_03205 0.36 +0.2 733,014 - PS417_03205 0.36 +0.3 733,397 + PS417_03205 0.77 +1.2 733,397 + PS417_03205 0.77 -0.8 733,397 + PS417_03205 0.77 +0.3 733,436 + PS417_03205 0.81 -0.3 733,436 + PS417_03205 0.81 -1.0 733,436 + PS417_03205 0.81 +0.6 733,436 + PS417_03205 0.81 -0.2 733,436 + PS417_03205 0.81 +0.3 733,436 + PS417_03205 0.81 +0.2 733,436 + PS417_03205 0.81 -0.5 733,437 - PS417_03205 0.81 -0.5 733,437 - PS417_03205 0.81 +0.2 733,439 + PS417_03205 0.81 +0.8 733,440 - PS417_03205 0.81 -0.1 733,464 + PS417_03205 0.84 +0.0 733,476 - PS417_03205 0.85 +0.0 733,736 + +0.4 733,737 - -0.9 733,774 + +0.6 733,802 + +1.2 733,802 + +1.0 734,124 + PS417_03210 0.28 +0.2 734,125 - PS417_03210 0.28 -0.2 734,230 - PS417_03210 0.38 +0.5 734,343 + PS417_03210 0.48 +1.5 734,343 + PS417_03210 0.48 +0.4 734,343 + PS417_03210 0.48 +0.6 734,343 + +1.6 734,343 + PS417_03210 0.48 -0.5 734,343 + PS417_03210 0.48 -0.4 734,344 - PS417_03210 0.48 -0.1 734,344 - PS417_03210 0.48 -0.2 734,344 - PS417_03210 0.48 +0.3 734,344 - PS417_03210 0.48 -0.3 734,344 - PS417_03210 0.48 -1.4 734,382 + PS417_03210 0.52 +0.4 734,382 + PS417_03210 0.52 -0.2 734,394 + PS417_03210 0.53 +0.1 734,667 - PS417_03210 0.78 +0.8 734,667 - PS417_03210 0.78 -0.3 734,667 - PS417_03210 0.78 +0.1 734,880 - +1.3 734,905 - +0.3 735,192 + PS417_03215 0.21 +0.5 735,241 + PS417_03215 0.25 +0.2 735,241 + PS417_03215 0.25 -2.0 735,242 - PS417_03215 0.25 -0.7 735,242 - PS417_03215 0.25 +0.3 735,496 + PS417_03215 0.43 -0.6 735,496 + PS417_03215 0.43 +0.2 735,497 - PS417_03215 0.44 +0.7 735,497 - PS417_03215 0.44 +0.6 735,691 + PS417_03215 0.58 +0.4 735,692 - PS417_03215 0.58 +0.9 735,837 + PS417_03215 0.69 -0.4 735,838 - PS417_03215 0.69 -0.6 735,843 + PS417_03215 0.69 +0.1 735,880 + PS417_03215 0.72 +0.3 735,880 + PS417_03215 0.72 -1.1 735,881 - PS417_03215 0.72 -2.4
Or see this region's nucleotide sequence