Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4146

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_4144 and Echvi_4145 are separated by 216 nucleotidesEchvi_4145 and Echvi_4146 are separated by 76 nucleotidesEchvi_4146 and Echvi_4147 are separated by 225 nucleotidesEchvi_4147 and Echvi_4148 overlap by 1 nucleotides Echvi_4144: Echvi_4144 - hypothetical protein, at 4,961,124 to 4,961,393 _4144 Echvi_4145: Echvi_4145 - Uncharacterized protein conserved in bacteria, at 4,961,610 to 4,961,975 _4145 Echvi_4146: Echvi_4146 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 4,962,052 to 4,963,395 _4146 Echvi_4147: Echvi_4147 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 4,963,621 to 4,964,256 _4147 Echvi_4148: Echvi_4148 - Copper chaperone, at 4,964,256 to 4,965,158 _4148 Position (kb) 4962 4963 4964Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 4961.106 kb on - strandat 4961.126 kb on - strandat 4961.166 kb on + strand, within Echvi_4144at 4961.237 kb on - strand, within Echvi_4144at 4961.237 kb on - strand, within Echvi_4144at 4961.237 kb on - strand, within Echvi_4144at 4961.320 kb on - strand, within Echvi_4144at 4961.328 kb on + strand, within Echvi_4144at 4961.329 kb on - strand, within Echvi_4144at 4961.334 kb on - strand, within Echvi_4144at 4961.373 kb on + strandat 4961.374 kb on - strandat 4961.462 kb on + strandat 4961.462 kb on + strandat 4961.462 kb on + strandat 4961.467 kb on + strandat 4961.493 kb on - strandat 4961.493 kb on - strandat 4961.569 kb on + strandat 4961.646 kb on + strandat 4961.646 kb on + strandat 4961.646 kb on + strandat 4961.647 kb on - strand, within Echvi_4145at 4961.655 kb on + strand, within Echvi_4145at 4961.676 kb on - strand, within Echvi_4145at 4961.714 kb on + strand, within Echvi_4145at 4961.777 kb on + strand, within Echvi_4145at 4961.814 kb on + strand, within Echvi_4145at 4961.819 kb on - strand, within Echvi_4145at 4961.934 kb on + strand, within Echvi_4145at 4961.946 kb on + strandat 4961.947 kb on - strandat 4962.061 kb on - strandat 4962.061 kb on - strandat 4962.089 kb on + strandat 4962.095 kb on + strandat 4962.095 kb on + strandat 4962.096 kb on - strandat 4962.096 kb on - strandat 4962.110 kb on - strandat 4962.110 kb on - strandat 4962.110 kb on - strandat 4962.118 kb on + strandat 4962.186 kb on + strandat 4962.187 kb on - strand, within Echvi_4146at 4962.213 kb on + strand, within Echvi_4146at 4962.230 kb on + strand, within Echvi_4146at 4962.230 kb on + strand, within Echvi_4146at 4962.230 kb on + strand, within Echvi_4146at 4962.236 kb on + strand, within Echvi_4146at 4962.236 kb on + strand, within Echvi_4146at 4962.237 kb on - strand, within Echvi_4146at 4962.237 kb on - strand, within Echvi_4146at 4962.237 kb on - strand, within Echvi_4146at 4962.237 kb on - strand, within Echvi_4146at 4962.249 kb on + strand, within Echvi_4146at 4962.266 kb on + strand, within Echvi_4146at 4962.267 kb on - strand, within Echvi_4146at 4962.304 kb on + strand, within Echvi_4146at 4962.304 kb on + strand, within Echvi_4146at 4962.310 kb on + strand, within Echvi_4146at 4962.310 kb on + strand, within Echvi_4146at 4962.310 kb on + strand, within Echvi_4146at 4962.311 kb on - strand, within Echvi_4146at 4962.311 kb on - strand, within Echvi_4146at 4962.311 kb on - strand, within Echvi_4146at 4962.311 kb on - strand, within Echvi_4146at 4962.336 kb on + strand, within Echvi_4146at 4962.336 kb on + strand, within Echvi_4146at 4962.341 kb on - strand, within Echvi_4146at 4962.341 kb on - strand, within Echvi_4146at 4962.341 kb on - strand, within Echvi_4146at 4962.341 kb on - strand, within Echvi_4146at 4962.341 kb on - strand, within Echvi_4146at 4962.350 kb on - strand, within Echvi_4146at 4962.359 kb on - strand, within Echvi_4146at 4962.387 kb on + strand, within Echvi_4146at 4962.389 kb on + strand, within Echvi_4146at 4962.417 kb on + strand, within Echvi_4146at 4962.477 kb on + strand, within Echvi_4146at 4962.477 kb on + strand, within Echvi_4146at 4962.477 kb on + strand, within Echvi_4146at 4962.477 kb on + strand, within Echvi_4146at 4962.480 kb on + strand, within Echvi_4146at 4962.481 kb on - strand, within Echvi_4146at 4962.481 kb on - strand, within Echvi_4146at 4962.483 kb on + strand, within Echvi_4146at 4962.484 kb on - strand, within Echvi_4146at 4962.503 kb on + strand, within Echvi_4146at 4962.503 kb on + strand, within Echvi_4146at 4962.503 kb on + strand, within Echvi_4146at 4962.504 kb on - strand, within Echvi_4146at 4962.504 kb on - strand, within Echvi_4146at 4962.504 kb on - strand, within Echvi_4146at 4962.504 kb on - strand, within Echvi_4146at 4962.505 kb on + strand, within Echvi_4146at 4962.505 kb on + strand, within Echvi_4146at 4962.506 kb on - strand, within Echvi_4146at 4962.506 kb on - strand, within Echvi_4146at 4962.506 kb on - strand, within Echvi_4146at 4962.510 kb on + strand, within Echvi_4146at 4962.510 kb on + strand, within Echvi_4146at 4962.510 kb on + strand, within Echvi_4146at 4962.517 kb on - strand, within Echvi_4146at 4962.533 kb on + strand, within Echvi_4146at 4962.533 kb on + strand, within Echvi_4146at 4962.533 kb on + strand, within Echvi_4146at 4962.534 kb on - strand, within Echvi_4146at 4962.629 kb on - strand, within Echvi_4146at 4962.679 kb on + strand, within Echvi_4146at 4962.680 kb on - strand, within Echvi_4146at 4962.682 kb on - strand, within Echvi_4146at 4962.730 kb on + strand, within Echvi_4146at 4962.730 kb on + strand, within Echvi_4146at 4962.730 kb on + strand, within Echvi_4146at 4962.731 kb on - strand, within Echvi_4146at 4962.738 kb on + strand, within Echvi_4146at 4962.773 kb on - strand, within Echvi_4146at 4962.773 kb on - strand, within Echvi_4146at 4962.777 kb on + strand, within Echvi_4146at 4962.778 kb on - strand, within Echvi_4146at 4962.822 kb on + strand, within Echvi_4146at 4962.825 kb on + strand, within Echvi_4146at 4962.873 kb on + strand, within Echvi_4146at 4962.874 kb on - strand, within Echvi_4146at 4962.874 kb on - strand, within Echvi_4146at 4962.875 kb on + strand, within Echvi_4146at 4962.875 kb on + strand, within Echvi_4146at 4962.876 kb on - strand, within Echvi_4146at 4962.897 kb on + strand, within Echvi_4146at 4962.897 kb on + strand, within Echvi_4146at 4962.897 kb on + strand, within Echvi_4146at 4963.153 kb on + strand, within Echvi_4146at 4963.154 kb on - strand, within Echvi_4146at 4963.154 kb on - strand, within Echvi_4146at 4963.154 kb on - strand, within Echvi_4146at 4963.167 kb on + strand, within Echvi_4146at 4963.216 kb on - strand, within Echvi_4146at 4963.286 kb on + strandat 4963.459 kb on + strandat 4963.459 kb on + strandat 4963.459 kb on + strandat 4963.459 kb on + strandat 4963.459 kb on + strandat 4963.492 kb on - strandat 4963.492 kb on - strandat 4963.492 kb on - strandat 4963.517 kb on - strandat 4963.517 kb on - strandat 4963.517 kb on - strandat 4963.517 kb on - strandat 4963.517 kb on - strandat 4963.539 kb on - strandat 4963.539 kb on - strandat 4963.580 kb on + strandat 4963.580 kb on + strandat 4963.580 kb on + strandat 4963.580 kb on + strandat 4963.581 kb on - strandat 4963.581 kb on - strandat 4963.581 kb on - strandat 4963.581 kb on - strandat 4963.581 kb on - strandat 4963.581 kb on - strandat 4963.583 kb on + strandat 4963.584 kb on - strandat 4963.584 kb on - strandat 4963.622 kb on + strandat 4963.626 kb on + strandat 4963.714 kb on + strand, within Echvi_4147at 4963.749 kb on + strand, within Echvi_4147at 4963.749 kb on + strand, within Echvi_4147at 4963.777 kb on - strand, within Echvi_4147at 4963.843 kb on + strand, within Echvi_4147at 4963.845 kb on + strand, within Echvi_4147at 4963.865 kb on - strand, within Echvi_4147at 4963.931 kb on + strand, within Echvi_4147at 4963.932 kb on - strand, within Echvi_4147at 4963.932 kb on - strand, within Echvi_4147at 4963.996 kb on - strand, within Echvi_4147at 4964.019 kb on + strand, within Echvi_4147at 4964.089 kb on + strand, within Echvi_4147at 4964.122 kb on - strand, within Echvi_4147at 4964.130 kb on + strand, within Echvi_4147at 4964.130 kb on + strand, within Echvi_4147at 4964.130 kb on + strand, within Echvi_4147at 4964.131 kb on - strand, within Echvi_4147at 4964.135 kb on - strand, within Echvi_4147at 4964.139 kb on + strand, within Echvi_4147at 4964.139 kb on + strand, within Echvi_4147at 4964.139 kb on + strand, within Echvi_4147at 4964.140 kb on - strand, within Echvi_4147at 4964.140 kb on - strand, within Echvi_4147at 4964.150 kb on - strand, within Echvi_4147at 4964.183 kb on + strand, within Echvi_4147at 4964.192 kb on - strand, within Echvi_4147at 4964.258 kb on - strandat 4964.277 kb on + strandat 4964.278 kb on - strandat 4964.344 kb on + strandat 4964.344 kb on + strandat 4964.344 kb on + strandat 4964.344 kb on + strandat 4964.345 kb on - strandat 4964.345 kb on - strandat 4964.349 kb on + strand, within Echvi_4148at 4964.352 kb on + strand, within Echvi_4148at 4964.353 kb on - strand, within Echvi_4148at 4964.353 kb on - strand, within Echvi_4148at 4964.357 kb on + strand, within Echvi_4148at 4964.357 kb on + strand, within Echvi_4148at 4964.358 kb on - strand, within Echvi_4148at 4964.358 kb on - strand, within Echvi_4148at 4964.358 kb on - strand, within Echvi_4148at 4964.358 kb on - strand, within Echvi_4148at 4964.360 kb on + strand, within Echvi_4148at 4964.372 kb on - strand, within Echvi_4148

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
4,961,106 - -2.1
4,961,126 - -0.1
4,961,166 + Echvi_4144 0.16 +1.9
4,961,237 - Echvi_4144 0.42 +0.1
4,961,237 - Echvi_4144 0.42 -1.6
4,961,237 - Echvi_4144 0.42 +1.2
4,961,320 - Echvi_4144 0.73 -3.1
4,961,328 + Echvi_4144 0.76 -0.9
4,961,329 - Echvi_4144 0.76 -2.4
4,961,334 - Echvi_4144 0.78 -2.0
4,961,373 + +1.7
4,961,374 - -3.4
4,961,462 + +1.3
4,961,462 + +1.0
4,961,462 + -0.0
4,961,467 + +1.5
4,961,493 - +1.2
4,961,493 - -1.8
4,961,569 + +0.5
4,961,646 + -0.8
4,961,646 + -3.8
4,961,646 + +3.3
4,961,647 - Echvi_4145 0.10 +2.0
4,961,655 + Echvi_4145 0.12 +0.2
4,961,676 - Echvi_4145 0.18 +2.2
4,961,714 + Echvi_4145 0.28 +3.6
4,961,777 + Echvi_4145 0.46 -0.1
4,961,814 + Echvi_4145 0.56 -1.2
4,961,819 - Echvi_4145 0.57 -1.5
4,961,934 + Echvi_4145 0.89 +0.0
4,961,946 + -0.5
4,961,947 - -2.8
4,962,061 - +1.9
4,962,061 - +1.3
4,962,089 + +0.7
4,962,095 + +0.7
4,962,095 + +0.8
4,962,096 - -0.5
4,962,096 - +1.3
4,962,110 - -1.8
4,962,110 - +1.9
4,962,110 - +1.5
4,962,118 + +3.3
4,962,186 + -3.0
4,962,187 - Echvi_4146 0.10 +0.4
4,962,213 + Echvi_4146 0.12 -1.5
4,962,230 + Echvi_4146 0.13 +1.5
4,962,230 + Echvi_4146 0.13 -2.0
4,962,230 + Echvi_4146 0.13 -1.4
4,962,236 + Echvi_4146 0.14 -1.1
4,962,236 + Echvi_4146 0.14 +2.2
4,962,237 - Echvi_4146 0.14 +1.3
4,962,237 - Echvi_4146 0.14 -1.6
4,962,237 - Echvi_4146 0.14 -1.1
4,962,237 - Echvi_4146 0.14 -1.2
4,962,249 + Echvi_4146 0.15 +1.7
4,962,266 + Echvi_4146 0.16 +1.0
4,962,267 - Echvi_4146 0.16 +0.5
4,962,304 + Echvi_4146 0.19 -1.2
4,962,304 + Echvi_4146 0.19 +4.7
4,962,310 + Echvi_4146 0.19 +6.2
4,962,310 + Echvi_4146 0.19 -1.1
4,962,310 + Echvi_4146 0.19 -0.5
4,962,311 - Echvi_4146 0.19 +3.1
4,962,311 - Echvi_4146 0.19 -3.3
4,962,311 - Echvi_4146 0.19 +0.5
4,962,311 - Echvi_4146 0.19 +0.5
4,962,336 + Echvi_4146 0.21 +2.9
4,962,336 + Echvi_4146 0.21 -0.6
4,962,341 - Echvi_4146 0.22 -0.4
4,962,341 - Echvi_4146 0.22 +0.6
4,962,341 - Echvi_4146 0.22 -1.5
4,962,341 - Echvi_4146 0.22 +1.7
4,962,341 - Echvi_4146 0.22 -0.5
4,962,350 - Echvi_4146 0.22 +0.5
4,962,359 - Echvi_4146 0.23 -1.6
4,962,387 + Echvi_4146 0.25 -3.2
4,962,389 + Echvi_4146 0.25 +0.7
4,962,417 + Echvi_4146 0.27 -3.2
4,962,477 + Echvi_4146 0.32 +0.5
4,962,477 + Echvi_4146 0.32 -2.8
4,962,477 + Echvi_4146 0.32 +2.9
4,962,477 + Echvi_4146 0.32 -0.9
4,962,480 + Echvi_4146 0.32 +3.5
4,962,481 - Echvi_4146 0.32 -0.8
4,962,481 - Echvi_4146 0.32 -0.6
4,962,483 + Echvi_4146 0.32 +1.2
4,962,484 - Echvi_4146 0.32 -2.8
4,962,503 + Echvi_4146 0.34 +1.6
4,962,503 + Echvi_4146 0.34 -1.2
4,962,503 + Echvi_4146 0.34 -2.3
4,962,504 - Echvi_4146 0.34 +0.9
4,962,504 - Echvi_4146 0.34 -1.1
4,962,504 - Echvi_4146 0.34 -2.2
4,962,504 - Echvi_4146 0.34 +1.9
4,962,505 + Echvi_4146 0.34 -2.5
4,962,505 + Echvi_4146 0.34 +0.5
4,962,506 - Echvi_4146 0.34 -0.3
4,962,506 - Echvi_4146 0.34 -2.4
4,962,506 - Echvi_4146 0.34 -0.4
4,962,510 + Echvi_4146 0.34 -2.1
4,962,510 + Echvi_4146 0.34 -1.9
4,962,510 + Echvi_4146 0.34 -1.5
4,962,517 - Echvi_4146 0.35 -2.3
4,962,533 + Echvi_4146 0.36 -0.8
4,962,533 + Echvi_4146 0.36 +0.3
4,962,533 + Echvi_4146 0.36 -0.9
4,962,534 - Echvi_4146 0.36 +1.3
4,962,629 - Echvi_4146 0.43 +2.6
4,962,679 + Echvi_4146 0.47 -0.8
4,962,680 - Echvi_4146 0.47 +0.2
4,962,682 - Echvi_4146 0.47 -2.1
4,962,730 + Echvi_4146 0.50 -1.6
4,962,730 + Echvi_4146 0.50 +0.9
4,962,730 + Echvi_4146 0.50 -1.7
4,962,731 - Echvi_4146 0.51 +1.5
4,962,738 + Echvi_4146 0.51 -3.0
4,962,773 - Echvi_4146 0.54 -0.8
4,962,773 - Echvi_4146 0.54 +0.3
4,962,777 + Echvi_4146 0.54 +0.6
4,962,778 - Echvi_4146 0.54 +1.4
4,962,822 + Echvi_4146 0.57 -2.8
4,962,825 + Echvi_4146 0.58 -2.6
4,962,873 + Echvi_4146 0.61 +1.3
4,962,874 - Echvi_4146 0.61 -0.9
4,962,874 - Echvi_4146 0.61 -0.1
4,962,875 + Echvi_4146 0.61 -0.5
4,962,875 + Echvi_4146 0.61 +0.8
4,962,876 - Echvi_4146 0.61 -2.6
4,962,897 + Echvi_4146 0.63 +0.4
4,962,897 + Echvi_4146 0.63 -0.1
4,962,897 + Echvi_4146 0.63 +1.7
4,963,153 + Echvi_4146 0.82 -1.6
4,963,154 - Echvi_4146 0.82 -1.5
4,963,154 - Echvi_4146 0.82 -0.5
4,963,154 - Echvi_4146 0.82 +1.5
4,963,167 + Echvi_4146 0.83 +1.9
4,963,216 - Echvi_4146 0.87 +1.3
4,963,286 + +1.2
4,963,459 + -2.6
4,963,459 + +4.0
4,963,459 + +2.1
4,963,459 + +0.5
4,963,459 + +1.9
4,963,492 - +2.2
4,963,492 - -0.5
4,963,492 - -2.3
4,963,517 - +0.5
4,963,517 - +3.0
4,963,517 - -2.7
4,963,517 - +3.1
4,963,517 - -0.8
4,963,539 - -1.6
4,963,539 - -0.1
4,963,580 + -2.1
4,963,580 + +1.5
4,963,580 + -1.7
4,963,580 + -0.8
4,963,581 - -0.6
4,963,581 - +0.6
4,963,581 - -1.9
4,963,581 - +0.6
4,963,581 - +0.9
4,963,581 - -0.6
4,963,583 + +0.7
4,963,584 - +0.2
4,963,584 - +0.6
4,963,622 + -2.5
4,963,626 + +0.7
4,963,714 + Echvi_4147 0.15 +0.9
4,963,749 + Echvi_4147 0.20 +1.0
4,963,749 + Echvi_4147 0.20 +0.9
4,963,777 - Echvi_4147 0.25 -2.4
4,963,843 + Echvi_4147 0.35 -0.1
4,963,845 + Echvi_4147 0.35 -2.5
4,963,865 - Echvi_4147 0.38 -2.1
4,963,931 + Echvi_4147 0.49 +1.4
4,963,932 - Echvi_4147 0.49 -1.1
4,963,932 - Echvi_4147 0.49 +2.0
4,963,996 - Echvi_4147 0.59 -0.8
4,964,019 + Echvi_4147 0.63 -2.6
4,964,089 + Echvi_4147 0.74 +0.4
4,964,122 - Echvi_4147 0.79 +2.6
4,964,130 + Echvi_4147 0.80 +0.8
4,964,130 + Echvi_4147 0.80 -1.4
4,964,130 + Echvi_4147 0.80 -1.9
4,964,131 - Echvi_4147 0.80 -1.6
4,964,135 - Echvi_4147 0.81 -0.5
4,964,139 + Echvi_4147 0.81 -1.6
4,964,139 + Echvi_4147 0.81 +1.8
4,964,139 + Echvi_4147 0.81 -2.9
4,964,140 - Echvi_4147 0.82 -3.1
4,964,140 - Echvi_4147 0.82 +2.2
4,964,150 - Echvi_4147 0.83 -0.8
4,964,183 + Echvi_4147 0.88 -0.3
4,964,192 - Echvi_4147 0.90 -1.3
4,964,258 - +0.7
4,964,277 + -3.2
4,964,278 - -2.6
4,964,344 + -3.3
4,964,344 + +0.1
4,964,344 + +2.9
4,964,344 + +1.9
4,964,345 - -1.6
4,964,345 - -0.1
4,964,349 + Echvi_4148 0.10 +0.6
4,964,352 + Echvi_4148 0.11 -2.6
4,964,353 - Echvi_4148 0.11 +0.0
4,964,353 - Echvi_4148 0.11 +0.6
4,964,357 + Echvi_4148 0.11 +1.0
4,964,357 + Echvi_4148 0.11 +3.3
4,964,358 - Echvi_4148 0.11 -3.5
4,964,358 - Echvi_4148 0.11 -0.9
4,964,358 - Echvi_4148 0.11 -0.9
4,964,358 - Echvi_4148 0.11 -0.8
4,964,360 + Echvi_4148 0.12 -0.5
4,964,372 - Echvi_4148 0.13 -0.9

Or see this region's nucleotide sequence