Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2795

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2794 and Echvi_2795 are separated by 12 nucleotidesEchvi_2795 and Echvi_2796 are separated by 31 nucleotides Echvi_2794: Echvi_2794 - succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family, at 3,340,022 to 3,340,708 _2794 Echvi_2795: Echvi_2795 - succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup, at 3,340,721 to 3,342,655 _2795 Echvi_2796: Echvi_2796 - succinate dehydrogenase and fumarate reductase iron-sulfur protein, at 3,342,687 to 3,343,436 _2796 Position (kb) 3340 3341 3342 3343Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3339.786 kb on + strandat 3339.801 kb on + strandat 3339.819 kb on + strandat 3339.819 kb on + strandat 3339.823 kb on + strandat 3339.827 kb on + strandat 3339.828 kb on - strandat 3339.878 kb on + strandat 3339.901 kb on + strandat 3339.916 kb on + strandat 3339.925 kb on + strandat 3340.706 kb on + strandat 3342.653 kb on + strandat 3343.401 kb on + strandat 3343.402 kb on - strandat 3343.433 kb on - strandat 3343.434 kb on + strandat 3343.434 kb on + strandat 3343.447 kb on + strandat 3343.448 kb on - strandat 3343.448 kb on - strandat 3343.492 kb on - strandat 3343.492 kb on - strandat 3343.530 kb on + strandat 3343.533 kb on - strandat 3343.555 kb on + strandat 3343.588 kb on + strandat 3343.592 kb on + strandat 3343.631 kb on + strandat 3343.648 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,339,786 + +2.3
3,339,801 + +2.2
3,339,819 + +1.6
3,339,819 + -0.2
3,339,823 + -3.2
3,339,827 + -2.9
3,339,828 - +3.3
3,339,878 + -2.0
3,339,901 + -0.8
3,339,916 + -1.3
3,339,925 + -0.4
3,340,706 + -1.4
3,342,653 + +0.6
3,343,401 + -0.4
3,343,402 - -2.7
3,343,433 - -1.0
3,343,434 + -1.8
3,343,434 + +0.8
3,343,447 + +1.2
3,343,448 - +0.0
3,343,448 - -2.9
3,343,492 - -2.7
3,343,492 - +0.8
3,343,530 + -0.6
3,343,533 - +0.4
3,343,555 + -1.5
3,343,588 + +1.4
3,343,592 + +0.6
3,343,631 + -1.8
3,343,648 - -0.7

Or see this region's nucleotide sequence