Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2049 and Echvi_2050 overlap by 4 nucleotides Echvi_2050 and Echvi_2051 are separated by 4 nucleotides Echvi_2051 and Echvi_2052 are separated by 31 nucleotides
Echvi_2049: Echvi_2049 - tRNA-guanine transglycosylase, queuosine-34-forming, at 2,418,237 to 2,419,367
_2049
Echvi_2050: Echvi_2050 - Predicted permeases, at 2,419,364 to 2,420,440
_2050
Echvi_2051: Echvi_2051 - Predicted permeases, at 2,420,445 to 2,421,365
_2051
Echvi_2052: Echvi_2052 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 2,421,397 to 2,422,203
_2052
Position (kb)
2419
2420
2421 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2418.379 kb on + strand, within Echvi_2049 at 2418.384 kb on + strand, within Echvi_2049 at 2418.404 kb on + strand, within Echvi_2049 at 2418.420 kb on + strand, within Echvi_2049 at 2418.420 kb on + strand, within Echvi_2049 at 2418.420 kb on + strand, within Echvi_2049 at 2418.429 kb on + strand, within Echvi_2049 at 2418.429 kb on + strand, within Echvi_2049 at 2418.494 kb on + strand, within Echvi_2049 at 2418.599 kb on + strand, within Echvi_2049 at 2418.632 kb on + strand, within Echvi_2049 at 2418.634 kb on + strand, within Echvi_2049 at 2418.634 kb on + strand, within Echvi_2049 at 2418.680 kb on + strand, within Echvi_2049 at 2418.754 kb on + strand, within Echvi_2049 at 2418.783 kb on + strand, within Echvi_2049 at 2418.783 kb on + strand, within Echvi_2049 at 2418.828 kb on + strand, within Echvi_2049 at 2418.830 kb on + strand, within Echvi_2049 at 2418.830 kb on + strand, within Echvi_2049 at 2418.971 kb on + strand, within Echvi_2049 at 2418.998 kb on + strand, within Echvi_2049 at 2419.197 kb on + strand, within Echvi_2049 at 2419.211 kb on + strand, within Echvi_2049 at 2419.269 kb on + strand at 2420.473 kb on + strand at 2420.474 kb on - strand at 2420.559 kb on + strand, within Echvi_2051 at 2420.560 kb on - strand, within Echvi_2051 at 2420.570 kb on - strand, within Echvi_2051 at 2420.601 kb on - strand, within Echvi_2051 at 2420.633 kb on - strand, within Echvi_2051 at 2420.725 kb on + strand, within Echvi_2051 at 2420.725 kb on + strand, within Echvi_2051 at 2420.725 kb on + strand, within Echvi_2051 at 2420.769 kb on - strand, within Echvi_2051 at 2420.769 kb on - strand, within Echvi_2051 at 2420.769 kb on - strand, within Echvi_2051 at 2420.769 kb on - strand, within Echvi_2051 at 2420.806 kb on - strand, within Echvi_2051 at 2420.812 kb on + strand, within Echvi_2051 at 2420.812 kb on + strand, within Echvi_2051 at 2420.812 kb on + strand, within Echvi_2051 at 2420.813 kb on - strand, within Echvi_2051 at 2420.834 kb on - strand, within Echvi_2051 at 2420.842 kb on + strand, within Echvi_2051 at 2420.842 kb on + strand, within Echvi_2051 at 2420.844 kb on + strand, within Echvi_2051 at 2420.844 kb on + strand, within Echvi_2051 at 2420.844 kb on + strand, within Echvi_2051 at 2420.845 kb on - strand, within Echvi_2051 at 2420.964 kb on + strand, within Echvi_2051 at 2420.964 kb on + strand, within Echvi_2051 at 2420.973 kb on - strand, within Echvi_2051 at 2421.031 kb on + strand, within Echvi_2051 at 2421.121 kb on + strand, within Echvi_2051 at 2421.122 kb on - strand, within Echvi_2051 at 2421.124 kb on - strand, within Echvi_2051 at 2421.160 kb on + strand, within Echvi_2051 at 2421.161 kb on - strand, within Echvi_2051 at 2421.161 kb on - strand, within Echvi_2051 at 2421.167 kb on - strand, within Echvi_2051 at 2421.167 kb on - strand, within Echvi_2051 at 2421.167 kb on - strand, within Echvi_2051 at 2421.193 kb on + strand, within Echvi_2051 at 2421.194 kb on - strand, within Echvi_2051 at 2421.194 kb on - strand, within Echvi_2051 at 2421.194 kb on - strand, within Echvi_2051 at 2421.212 kb on + strand, within Echvi_2051 at 2421.213 kb on - strand, within Echvi_2051 at 2421.213 kb on - strand, within Echvi_2051 at 2421.267 kb on - strand, within Echvi_2051 at 2421.304 kb on - strand at 2421.324 kb on + strand at 2421.364 kb on - strand at 2421.399 kb on - strand at 2421.399 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 2,418,379 + Echvi_2049 0.13 +1.2 2,418,384 + Echvi_2049 0.13 -2.2 2,418,404 + Echvi_2049 0.15 +1.1 2,418,420 + Echvi_2049 0.16 -3.3 2,418,420 + Echvi_2049 0.16 -1.1 2,418,420 + Echvi_2049 0.16 -1.3 2,418,429 + Echvi_2049 0.17 +2.4 2,418,429 + Echvi_2049 0.17 +1.2 2,418,494 + Echvi_2049 0.23 -3.5 2,418,599 + Echvi_2049 0.32 +1.5 2,418,632 + Echvi_2049 0.35 -1.8 2,418,634 + Echvi_2049 0.35 -2.9 2,418,634 + Echvi_2049 0.35 -0.6 2,418,680 + Echvi_2049 0.39 -0.5 2,418,754 + Echvi_2049 0.46 -1.2 2,418,783 + Echvi_2049 0.48 +3.8 2,418,783 + Echvi_2049 0.48 -1.8 2,418,828 + Echvi_2049 0.52 -2.3 2,418,830 + Echvi_2049 0.52 -0.6 2,418,830 + Echvi_2049 0.52 -1.7 2,418,971 + Echvi_2049 0.65 +1.5 2,418,998 + Echvi_2049 0.67 -0.6 2,419,197 + Echvi_2049 0.85 -3.5 2,419,211 + Echvi_2049 0.86 -1.2 2,419,269 + +1.8 2,420,473 + -0.8 2,420,474 - +1.6 2,420,559 + Echvi_2051 0.12 -2.5 2,420,560 - Echvi_2051 0.12 -1.2 2,420,570 - Echvi_2051 0.14 -2.0 2,420,601 - Echvi_2051 0.17 -1.3 2,420,633 - Echvi_2051 0.20 -2.3 2,420,725 + Echvi_2051 0.30 -0.3 2,420,725 + Echvi_2051 0.30 +2.8 2,420,725 + Echvi_2051 0.30 -0.8 2,420,769 - Echvi_2051 0.35 +0.1 2,420,769 - Echvi_2051 0.35 +0.5 2,420,769 - Echvi_2051 0.35 -0.7 2,420,769 - Echvi_2051 0.35 -0.1 2,420,806 - Echvi_2051 0.39 -0.1 2,420,812 + Echvi_2051 0.40 +0.8 2,420,812 + Echvi_2051 0.40 +1.9 2,420,812 + Echvi_2051 0.40 +1.6 2,420,813 - Echvi_2051 0.40 -4.0 2,420,834 - Echvi_2051 0.42 +1.8 2,420,842 + Echvi_2051 0.43 -3.1 2,420,842 + Echvi_2051 0.43 +0.0 2,420,844 + Echvi_2051 0.43 -3.5 2,420,844 + Echvi_2051 0.43 +1.3 2,420,844 + Echvi_2051 0.43 +0.3 2,420,845 - Echvi_2051 0.43 +1.8 2,420,964 + Echvi_2051 0.56 -2.7 2,420,964 + Echvi_2051 0.56 +2.6 2,420,973 - Echvi_2051 0.57 +1.4 2,421,031 + Echvi_2051 0.64 +2.1 2,421,121 + Echvi_2051 0.73 -2.1 2,421,122 - Echvi_2051 0.74 -0.6 2,421,124 - Echvi_2051 0.74 +1.9 2,421,160 + Echvi_2051 0.78 +1.4 2,421,161 - Echvi_2051 0.78 -4.0 2,421,161 - Echvi_2051 0.78 +2.5 2,421,167 - Echvi_2051 0.78 +0.4 2,421,167 - Echvi_2051 0.78 -3.7 2,421,167 - Echvi_2051 0.78 -0.2 2,421,193 + Echvi_2051 0.81 +2.0 2,421,194 - Echvi_2051 0.81 +3.2 2,421,194 - Echvi_2051 0.81 -0.6 2,421,194 - Echvi_2051 0.81 -1.6 2,421,212 + Echvi_2051 0.83 +1.7 2,421,213 - Echvi_2051 0.83 +0.4 2,421,213 - Echvi_2051 0.83 +1.4 2,421,267 - Echvi_2051 0.89 +0.0 2,421,304 - +1.4 2,421,324 + +0.1 2,421,364 - -0.3 2,421,399 - -2.1 2,421,399 - +0.9
Or see this region's nucleotide sequence