Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1348 and Echvi_1349 are separated by 468 nucleotides Echvi_1349 and Echvi_1350 are separated by 4 nucleotides
Echvi_1348: Echvi_1348 - phage/plasmid-related protein TIGR03299, at 1,554,050 to 1,555,114
_1348
Echvi_1349: Echvi_1349 - Mg-dependent DNase, at 1,555,583 to 1,556,332
_1349
Echvi_1350: Echvi_1350 - hypothetical protein, at 1,556,337 to 1,557,677
_1350
Position (kb)
1555
1556
1557 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1554.645 kb on + strand, within Echvi_1348 at 1554.667 kb on + strand, within Echvi_1348 at 1554.671 kb on + strand, within Echvi_1348 at 1554.816 kb on + strand, within Echvi_1348 at 1554.839 kb on + strand, within Echvi_1348 at 1554.946 kb on + strand, within Echvi_1348 at 1554.970 kb on + strand, within Echvi_1348 at 1554.972 kb on + strand, within Echvi_1348 at 1555.014 kb on + strand at 1555.015 kb on - strand at 1555.128 kb on + strand at 1555.227 kb on + strand at 1555.227 kb on + strand at 1555.282 kb on + strand at 1555.416 kb on + strand at 1555.416 kb on + strand at 1555.455 kb on + strand at 1555.482 kb on + strand at 1555.484 kb on + strand at 1555.485 kb on - strand at 1555.485 kb on - strand at 1555.560 kb on - strand at 1555.584 kb on + strand at 1555.604 kb on + strand at 1555.615 kb on + strand at 1555.636 kb on + strand at 1555.675 kb on + strand, within Echvi_1349 at 1555.683 kb on - strand, within Echvi_1349 at 1555.694 kb on + strand, within Echvi_1349 at 1555.694 kb on + strand, within Echvi_1349 at 1555.696 kb on + strand, within Echvi_1349 at 1555.697 kb on - strand, within Echvi_1349 at 1555.712 kb on + strand, within Echvi_1349 at 1555.754 kb on + strand, within Echvi_1349 at 1555.757 kb on + strand, within Echvi_1349 at 1555.785 kb on - strand, within Echvi_1349 at 1555.807 kb on + strand, within Echvi_1349 at 1555.807 kb on + strand, within Echvi_1349 at 1555.813 kb on + strand, within Echvi_1349 at 1555.814 kb on - strand, within Echvi_1349 at 1555.814 kb on - strand, within Echvi_1349 at 1555.814 kb on - strand, within Echvi_1349 at 1555.823 kb on - strand, within Echvi_1349 at 1555.853 kb on + strand, within Echvi_1349 at 1555.853 kb on + strand, within Echvi_1349 at 1555.854 kb on - strand, within Echvi_1349 at 1555.895 kb on - strand, within Echvi_1349 at 1555.919 kb on + strand, within Echvi_1349 at 1555.928 kb on + strand, within Echvi_1349 at 1555.959 kb on - strand, within Echvi_1349 at 1555.964 kb on + strand, within Echvi_1349 at 1555.992 kb on - strand, within Echvi_1349 at 1555.992 kb on - strand, within Echvi_1349 at 1556.054 kb on - strand, within Echvi_1349 at 1556.054 kb on - strand, within Echvi_1349 at 1556.056 kb on + strand, within Echvi_1349 at 1556.057 kb on - strand, within Echvi_1349 at 1556.064 kb on - strand, within Echvi_1349 at 1556.070 kb on - strand, within Echvi_1349 at 1556.070 kb on - strand, within Echvi_1349 at 1556.082 kb on + strand, within Echvi_1349 at 1556.082 kb on + strand, within Echvi_1349 at 1556.118 kb on - strand, within Echvi_1349 at 1556.224 kb on + strand, within Echvi_1349 at 1556.224 kb on + strand, within Echvi_1349 at 1556.225 kb on - strand, within Echvi_1349 at 1556.238 kb on - strand, within Echvi_1349 at 1556.273 kb on + strand at 1556.273 kb on + strand at 1556.327 kb on + strand at 1556.327 kb on + strand at 1556.328 kb on - strand at 1556.328 kb on - strand at 1556.338 kb on + strand at 1556.338 kb on + strand at 1556.343 kb on - strand at 1556.346 kb on - strand at 1556.377 kb on + strand at 1556.378 kb on - strand at 1556.385 kb on + strand at 1556.386 kb on - strand at 1556.389 kb on + strand at 1556.389 kb on + strand at 1556.437 kb on - strand at 1556.437 kb on - strand at 1556.453 kb on + strand at 1556.454 kb on - strand at 1556.454 kb on - strand at 1556.498 kb on + strand, within Echvi_1350 at 1556.499 kb on - strand, within Echvi_1350 at 1556.551 kb on + strand, within Echvi_1350 at 1556.558 kb on - strand, within Echvi_1350 at 1556.558 kb on - strand, within Echvi_1350 at 1556.560 kb on + strand, within Echvi_1350 at 1556.561 kb on - strand, within Echvi_1350 at 1556.564 kb on + strand, within Echvi_1350 at 1556.565 kb on - strand, within Echvi_1350 at 1556.667 kb on + strand, within Echvi_1350 at 1556.709 kb on - strand, within Echvi_1350 at 1556.709 kb on - strand, within Echvi_1350 at 1556.709 kb on - strand, within Echvi_1350 at 1556.722 kb on - strand, within Echvi_1350 at 1556.741 kb on + strand, within Echvi_1350 at 1556.741 kb on + strand, within Echvi_1350 at 1556.748 kb on + strand, within Echvi_1350 at 1556.749 kb on - strand, within Echvi_1350 at 1556.765 kb on + strand, within Echvi_1350 at 1556.765 kb on + strand, within Echvi_1350 at 1556.765 kb on + strand, within Echvi_1350 at 1556.766 kb on - strand, within Echvi_1350 at 1556.766 kb on - strand, within Echvi_1350 at 1556.766 kb on - strand, within Echvi_1350 at 1556.771 kb on - strand, within Echvi_1350 at 1556.783 kb on + strand, within Echvi_1350 at 1556.861 kb on + strand, within Echvi_1350 at 1556.902 kb on - strand, within Echvi_1350 at 1556.902 kb on - strand, within Echvi_1350 at 1556.902 kb on - strand, within Echvi_1350 at 1556.927 kb on + strand, within Echvi_1350 at 1556.930 kb on - strand, within Echvi_1350 at 1556.939 kb on + strand, within Echvi_1350 at 1556.966 kb on + strand, within Echvi_1350 at 1556.967 kb on - strand, within Echvi_1350 at 1556.967 kb on - strand, within Echvi_1350 at 1556.967 kb on - strand, within Echvi_1350 at 1556.979 kb on + strand, within Echvi_1350 at 1556.980 kb on - strand, within Echvi_1350 at 1556.982 kb on - strand, within Echvi_1350 at 1557.022 kb on + strand, within Echvi_1350 at 1557.033 kb on + strand, within Echvi_1350 at 1557.033 kb on + strand, within Echvi_1350 at 1557.039 kb on + strand, within Echvi_1350 at 1557.053 kb on + strand, within Echvi_1350 at 1557.053 kb on + strand, within Echvi_1350 at 1557.083 kb on + strand, within Echvi_1350 at 1557.084 kb on - strand, within Echvi_1350 at 1557.125 kb on + strand, within Echvi_1350 at 1557.125 kb on + strand, within Echvi_1350 at 1557.126 kb on - strand, within Echvi_1350 at 1557.146 kb on + strand, within Echvi_1350 at 1557.146 kb on + strand, within Echvi_1350 at 1557.146 kb on + strand, within Echvi_1350 at 1557.146 kb on + strand, within Echvi_1350 at 1557.147 kb on - strand, within Echvi_1350 at 1557.147 kb on - strand, within Echvi_1350 at 1557.147 kb on - strand, within Echvi_1350 at 1557.147 kb on - strand, within Echvi_1350 at 1557.167 kb on + strand, within Echvi_1350 at 1557.167 kb on + strand, within Echvi_1350 at 1557.187 kb on - strand, within Echvi_1350 at 1557.187 kb on - strand, within Echvi_1350 at 1557.234 kb on + strand, within Echvi_1350 at 1557.306 kb on + strand, within Echvi_1350 at 1557.307 kb on - strand, within Echvi_1350
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,554,645 + Echvi_1348 0.56 -0.5 1,554,667 + Echvi_1348 0.58 +0.3 1,554,671 + Echvi_1348 0.58 -0.0 1,554,816 + Echvi_1348 0.72 +0.9 1,554,839 + Echvi_1348 0.74 -3.1 1,554,946 + Echvi_1348 0.84 -0.3 1,554,970 + Echvi_1348 0.86 -1.9 1,554,972 + Echvi_1348 0.87 +2.7 1,555,014 + -1.2 1,555,015 - -2.2 1,555,128 + +2.6 1,555,227 + +1.1 1,555,227 + +2.5 1,555,282 + +1.3 1,555,416 + -2.4 1,555,416 + +1.9 1,555,455 + -3.0 1,555,482 + -1.7 1,555,484 + -2.0 1,555,485 - -3.1 1,555,485 - +1.8 1,555,560 - -1.0 1,555,584 + -2.4 1,555,604 + -0.7 1,555,615 + -1.2 1,555,636 + +1.0 1,555,675 + Echvi_1349 0.12 +1.1 1,555,683 - Echvi_1349 0.13 -0.7 1,555,694 + Echvi_1349 0.15 +1.0 1,555,694 + Echvi_1349 0.15 +1.2 1,555,696 + Echvi_1349 0.15 +0.1 1,555,697 - Echvi_1349 0.15 +2.3 1,555,712 + Echvi_1349 0.17 -3.8 1,555,754 + Echvi_1349 0.23 +1.3 1,555,757 + Echvi_1349 0.23 +0.8 1,555,785 - Echvi_1349 0.27 +1.4 1,555,807 + Echvi_1349 0.30 -3.8 1,555,807 + Echvi_1349 0.30 -2.2 1,555,813 + Echvi_1349 0.31 +3.8 1,555,814 - Echvi_1349 0.31 +1.2 1,555,814 - Echvi_1349 0.31 -1.7 1,555,814 - Echvi_1349 0.31 +0.6 1,555,823 - Echvi_1349 0.32 +2.8 1,555,853 + Echvi_1349 0.36 +0.6 1,555,853 + Echvi_1349 0.36 +0.1 1,555,854 - Echvi_1349 0.36 +1.3 1,555,895 - Echvi_1349 0.42 -1.4 1,555,919 + Echvi_1349 0.45 +0.6 1,555,928 + Echvi_1349 0.46 +0.3 1,555,959 - Echvi_1349 0.50 -1.6 1,555,964 + Echvi_1349 0.51 +2.2 1,555,992 - Echvi_1349 0.55 -0.1 1,555,992 - Echvi_1349 0.55 +0.8 1,556,054 - Echvi_1349 0.63 +2.8 1,556,054 - Echvi_1349 0.63 -1.8 1,556,056 + Echvi_1349 0.63 -2.8 1,556,057 - Echvi_1349 0.63 +2.0 1,556,064 - Echvi_1349 0.64 +0.8 1,556,070 - Echvi_1349 0.65 +2.8 1,556,070 - Echvi_1349 0.65 +3.0 1,556,082 + Echvi_1349 0.67 +0.7 1,556,082 + Echvi_1349 0.67 +0.9 1,556,118 - Echvi_1349 0.71 -1.1 1,556,224 + Echvi_1349 0.85 -1.4 1,556,224 + Echvi_1349 0.85 +2.1 1,556,225 - Echvi_1349 0.86 -0.1 1,556,238 - Echvi_1349 0.87 -1.7 1,556,273 + -1.1 1,556,273 + -1.7 1,556,327 + -2.1 1,556,327 + -1.7 1,556,328 - -2.9 1,556,328 - -1.2 1,556,338 + -0.7 1,556,338 + +0.3 1,556,343 - -0.5 1,556,346 - +1.3 1,556,377 + -0.7 1,556,378 - +1.2 1,556,385 + -2.9 1,556,386 - +0.7 1,556,389 + +0.8 1,556,389 + -2.5 1,556,437 - -1.9 1,556,437 - -1.1 1,556,453 + -0.7 1,556,454 - -1.8 1,556,454 - -2.0 1,556,498 + Echvi_1350 0.12 +0.9 1,556,499 - Echvi_1350 0.12 -2.4 1,556,551 + Echvi_1350 0.16 -0.8 1,556,558 - Echvi_1350 0.16 +0.3 1,556,558 - Echvi_1350 0.16 +0.8 1,556,560 + Echvi_1350 0.17 +1.5 1,556,561 - Echvi_1350 0.17 -1.9 1,556,564 + Echvi_1350 0.17 +0.1 1,556,565 - Echvi_1350 0.17 +1.3 1,556,667 + Echvi_1350 0.25 -3.1 1,556,709 - Echvi_1350 0.28 -3.3 1,556,709 - Echvi_1350 0.28 -3.3 1,556,709 - Echvi_1350 0.28 +0.4 1,556,722 - Echvi_1350 0.29 +0.3 1,556,741 + Echvi_1350 0.30 +1.9 1,556,741 + Echvi_1350 0.30 -2.1 1,556,748 + Echvi_1350 0.31 -0.5 1,556,749 - Echvi_1350 0.31 +1.1 1,556,765 + Echvi_1350 0.32 -2.3 1,556,765 + Echvi_1350 0.32 +2.3 1,556,765 + Echvi_1350 0.32 +1.6 1,556,766 - Echvi_1350 0.32 -1.0 1,556,766 - Echvi_1350 0.32 -0.1 1,556,766 - Echvi_1350 0.32 -2.1 1,556,771 - Echvi_1350 0.32 -2.5 1,556,783 + Echvi_1350 0.33 -0.7 1,556,861 + Echvi_1350 0.39 +1.8 1,556,902 - Echvi_1350 0.42 +2.3 1,556,902 - Echvi_1350 0.42 +0.8 1,556,902 - Echvi_1350 0.42 +0.3 1,556,927 + Echvi_1350 0.44 +0.5 1,556,930 - Echvi_1350 0.44 +1.0 1,556,939 + Echvi_1350 0.45 +1.7 1,556,966 + Echvi_1350 0.47 -2.0 1,556,967 - Echvi_1350 0.47 +0.6 1,556,967 - Echvi_1350 0.47 -2.4 1,556,967 - Echvi_1350 0.47 -2.2 1,556,979 + Echvi_1350 0.48 -2.1 1,556,980 - Echvi_1350 0.48 +1.2 1,556,982 - Echvi_1350 0.48 -1.5 1,557,022 + Echvi_1350 0.51 -0.4 1,557,033 + Echvi_1350 0.52 +0.9 1,557,033 + Echvi_1350 0.52 +2.2 1,557,039 + Echvi_1350 0.52 -0.9 1,557,053 + Echvi_1350 0.53 +1.4 1,557,053 + Echvi_1350 0.53 +0.0 1,557,083 + Echvi_1350 0.56 -1.4 1,557,084 - Echvi_1350 0.56 -2.8 1,557,125 + Echvi_1350 0.59 +0.9 1,557,125 + Echvi_1350 0.59 -0.8 1,557,126 - Echvi_1350 0.59 -1.5 1,557,146 + Echvi_1350 0.60 +1.1 1,557,146 + Echvi_1350 0.60 +1.6 1,557,146 + Echvi_1350 0.60 -0.5 1,557,146 + Echvi_1350 0.60 +1.8 1,557,147 - Echvi_1350 0.60 +1.0 1,557,147 - Echvi_1350 0.60 +4.1 1,557,147 - Echvi_1350 0.60 -1.4 1,557,147 - Echvi_1350 0.60 -1.7 1,557,167 + Echvi_1350 0.62 +0.9 1,557,167 + Echvi_1350 0.62 +1.7 1,557,187 - Echvi_1350 0.63 +2.6 1,557,187 - Echvi_1350 0.63 -0.5 1,557,234 + Echvi_1350 0.67 -2.0 1,557,306 + Echvi_1350 0.72 -2.2 1,557,307 - Echvi_1350 0.72 -1.6
Or see this region's nucleotide sequence