Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1043

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1041 and Echvi_1042 are separated by 136 nucleotidesEchvi_1042 and Echvi_1043 are separated by 145 nucleotidesEchvi_1043 and Echvi_1044 overlap by 8 nucleotides Echvi_1041: Echvi_1041 - Predicted phosphohydrolases, at 1,201,978 to 1,203,540 _1041 Echvi_1042: Echvi_1042 - hypothetical protein, at 1,203,677 to 1,203,802 _1042 Echvi_1043: Echvi_1043 - hypothetical protein, at 1,203,948 to 1,204,514 _1043 Echvi_1044: Echvi_1044 - Choline dehydrogenase and related flavoproteins, at 1,204,507 to 1,206,207 _1044 Position (kb) 1203 1204 1205Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1203.011 kb on - strand, within Echvi_1041at 1203.012 kb on + strand, within Echvi_1041at 1203.012 kb on + strand, within Echvi_1041at 1203.012 kb on + strand, within Echvi_1041at 1203.012 kb on + strand, within Echvi_1041at 1203.012 kb on + strand, within Echvi_1041at 1203.012 kb on + strand, within Echvi_1041at 1203.013 kb on - strand, within Echvi_1041at 1203.013 kb on - strand, within Echvi_1041at 1203.013 kb on - strand, within Echvi_1041at 1203.013 kb on - strand, within Echvi_1041at 1203.017 kb on + strand, within Echvi_1041at 1203.017 kb on + strand, within Echvi_1041at 1203.018 kb on - strand, within Echvi_1041at 1203.018 kb on - strand, within Echvi_1041at 1203.072 kb on + strand, within Echvi_1041at 1203.136 kb on + strand, within Echvi_1041at 1203.137 kb on - strand, within Echvi_1041at 1203.148 kb on + strand, within Echvi_1041at 1203.149 kb on - strand, within Echvi_1041at 1203.149 kb on - strand, within Echvi_1041at 1203.149 kb on - strand, within Echvi_1041at 1203.223 kb on - strand, within Echvi_1041at 1203.223 kb on - strand, within Echvi_1041at 1203.223 kb on - strand, within Echvi_1041at 1203.316 kb on + strand, within Echvi_1041at 1203.316 kb on + strand, within Echvi_1041at 1203.316 kb on + strand, within Echvi_1041at 1203.316 kb on + strand, within Echvi_1041at 1203.316 kb on + strand, within Echvi_1041at 1203.317 kb on - strand, within Echvi_1041at 1203.317 kb on - strand, within Echvi_1041at 1203.317 kb on - strand, within Echvi_1041at 1203.317 kb on - strand, within Echvi_1041at 1203.317 kb on - strand, within Echvi_1041at 1203.317 kb on - strand, within Echvi_1041at 1203.317 kb on - strand, within Echvi_1041at 1203.317 kb on - strand, within Echvi_1041at 1203.317 kb on - strand, within Echvi_1041at 1203.317 kb on - strand, within Echvi_1041at 1203.317 kb on - strand, within Echvi_1041at 1203.319 kb on - strand, within Echvi_1041at 1203.319 kb on - strandat 1203.328 kb on + strand, within Echvi_1041at 1203.329 kb on - strand, within Echvi_1041at 1203.340 kb on + strand, within Echvi_1041at 1203.340 kb on + strand, within Echvi_1041at 1203.341 kb on - strand, within Echvi_1041at 1203.341 kb on - strand, within Echvi_1041at 1203.356 kb on - strand, within Echvi_1041at 1203.356 kb on - strand, within Echvi_1041at 1203.356 kb on - strand, within Echvi_1041at 1203.357 kb on + strand, within Echvi_1041at 1203.357 kb on + strand, within Echvi_1041at 1203.358 kb on - strand, within Echvi_1041at 1203.358 kb on - strand, within Echvi_1041at 1203.358 kb on - strand, within Echvi_1041at 1203.358 kb on - strand, within Echvi_1041at 1203.417 kb on + strandat 1203.418 kb on - strandat 1203.492 kb on + strandat 1203.493 kb on - strandat 1203.493 kb on - strandat 1203.493 kb on - strandat 1203.493 kb on - strandat 1203.552 kb on + strandat 1203.574 kb on + strandat 1203.574 kb on + strandat 1203.575 kb on - strandat 1203.617 kb on - strandat 1203.617 kb on - strandat 1203.617 kb on - strandat 1203.617 kb on - strandat 1203.619 kb on - strandat 1203.621 kb on + strandat 1203.632 kb on + strandat 1203.634 kb on + strandat 1203.634 kb on + strandat 1203.634 kb on + strandat 1203.634 kb on + strandat 1203.634 kb on + strandat 1203.635 kb on - strandat 1203.635 kb on - strandat 1203.635 kb on - strandat 1203.655 kb on - strandat 1203.678 kb on + strandat 1203.678 kb on + strandat 1203.678 kb on + strandat 1203.678 kb on + strandat 1203.679 kb on - strandat 1203.746 kb on + strand, within Echvi_1042at 1203.746 kb on + strand, within Echvi_1042at 1203.775 kb on + strand, within Echvi_1042at 1203.775 kb on + strand, within Echvi_1042at 1203.803 kb on + strandat 1203.803 kb on + strandat 1203.848 kb on + strandat 1203.849 kb on - strandat 1203.849 kb on - strandat 1203.852 kb on + strandat 1203.853 kb on - strandat 1203.947 kb on + strandat 1203.947 kb on + strandat 1203.948 kb on - strandat 1203.968 kb on - strandat 1203.968 kb on - strandat 1203.968 kb on - strandat 1203.968 kb on - strandat 1204.036 kb on + strand, within Echvi_1043at 1204.047 kb on + strand, within Echvi_1043at 1204.047 kb on + strand, within Echvi_1043at 1204.048 kb on - strand, within Echvi_1043at 1204.109 kb on + strand, within Echvi_1043at 1204.110 kb on - strand, within Echvi_1043at 1204.150 kb on + strand, within Echvi_1043at 1204.151 kb on - strand, within Echvi_1043at 1204.151 kb on - strand, within Echvi_1043at 1204.151 kb on - strand, within Echvi_1043at 1204.239 kb on + strand, within Echvi_1043at 1204.241 kb on + strand, within Echvi_1043at 1204.242 kb on - strand, within Echvi_1043at 1204.399 kb on - strand, within Echvi_1043at 1204.399 kb on - strand, within Echvi_1043at 1204.403 kb on - strand, within Echvi_1043at 1204.413 kb on + strand, within Echvi_1043at 1204.414 kb on - strand, within Echvi_1043at 1204.417 kb on + strand, within Echvi_1043at 1204.417 kb on + strand, within Echvi_1043at 1204.417 kb on + strand, within Echvi_1043at 1204.417 kb on + strand, within Echvi_1043at 1204.418 kb on - strand, within Echvi_1043at 1204.418 kb on - strand, within Echvi_1043at 1204.418 kb on - strand, within Echvi_1043at 1204.418 kb on - strand, within Echvi_1043at 1204.418 kb on - strand, within Echvi_1043at 1204.418 kb on - strand, within Echvi_1043at 1204.418 kb on - strand, within Echvi_1043at 1204.502 kb on + strandat 1204.524 kb on - strandat 1204.559 kb on + strandat 1204.560 kb on - strandat 1204.560 kb on - strandat 1204.659 kb on + strandat 1204.660 kb on - strandat 1204.660 kb on - strandat 1204.666 kb on + strandat 1204.667 kb on - strandat 1204.680 kb on + strand, within Echvi_1044at 1204.680 kb on + strand, within Echvi_1044at 1204.716 kb on - strand, within Echvi_1044at 1204.813 kb on + strand, within Echvi_1044at 1204.813 kb on + strand, within Echvi_1044at 1204.813 kb on + strand, within Echvi_1044at 1204.813 kb on + strand, within Echvi_1044at 1204.813 kb on + strand, within Echvi_1044at 1204.813 kb on + strand, within Echvi_1044at 1204.813 kb on + strand, within Echvi_1044at 1204.813 kb on + strand, within Echvi_1044at 1204.813 kb on + strand, within Echvi_1044at 1204.813 kb on + strand, within Echvi_1044at 1204.813 kb on + strand, within Echvi_1044at 1204.814 kb on - strand, within Echvi_1044at 1204.814 kb on - strand, within Echvi_1044at 1204.814 kb on - strand, within Echvi_1044at 1204.814 kb on - strand, within Echvi_1044at 1204.814 kb on - strand, within Echvi_1044at 1204.943 kb on + strand, within Echvi_1044at 1204.982 kb on - strand, within Echvi_1044at 1204.987 kb on + strand, within Echvi_1044at 1204.987 kb on + strand, within Echvi_1044at 1204.987 kb on + strand, within Echvi_1044at 1204.987 kb on + strand, within Echvi_1044at 1204.987 kb on + strand, within Echvi_1044at 1204.987 kb on + strand, within Echvi_1044at 1204.987 kb on + strand, within Echvi_1044at 1204.987 kb on + strand, within Echvi_1044at 1204.987 kb on + strand, within Echvi_1044at 1204.987 kb on + strand, within Echvi_1044at 1204.988 kb on - strand, within Echvi_1044at 1204.988 kb on - strand, within Echvi_1044at 1204.988 kb on - strand, within Echvi_1044at 1204.988 kb on - strand, within Echvi_1044at 1205.003 kb on + strand, within Echvi_1044at 1205.004 kb on - strand, within Echvi_1044at 1205.090 kb on - strand, within Echvi_1044at 1205.173 kb on + strand, within Echvi_1044at 1205.174 kb on - strand, within Echvi_1044at 1205.176 kb on + strand, within Echvi_1044at 1205.176 kb on + strand, within Echvi_1044at 1205.177 kb on - strand, within Echvi_1044at 1205.177 kb on - strand, within Echvi_1044at 1205.245 kb on + strand, within Echvi_1044at 1205.270 kb on + strand, within Echvi_1044at 1205.331 kb on + strand, within Echvi_1044at 1205.331 kb on + strand, within Echvi_1044at 1205.331 kb on + strand, within Echvi_1044at 1205.331 kb on + strand, within Echvi_1044at 1205.332 kb on - strand, within Echvi_1044at 1205.332 kb on - strand, within Echvi_1044at 1205.332 kb on - strand, within Echvi_1044at 1205.332 kb on - strand, within Echvi_1044at 1205.333 kb on + strand, within Echvi_1044at 1205.333 kb on + strand, within Echvi_1044at 1205.334 kb on - strand, within Echvi_1044at 1205.334 kb on - strand, within Echvi_1044at 1205.335 kb on + strand, within Echvi_1044at 1205.335 kb on + strand, within Echvi_1044at 1205.335 kb on + strand, within Echvi_1044at 1205.336 kb on - strand, within Echvi_1044at 1205.344 kb on - strand, within Echvi_1044at 1205.373 kb on - strand, within Echvi_1044at 1205.396 kb on + strand, within Echvi_1044at 1205.396 kb on + strand, within Echvi_1044at 1205.405 kb on - strand, within Echvi_1044at 1205.407 kb on + strand, within Echvi_1044at 1205.407 kb on + strand, within Echvi_1044at 1205.407 kb on + strand, within Echvi_1044at 1205.407 kb on + strand, within Echvi_1044at 1205.408 kb on - strand, within Echvi_1044at 1205.408 kb on - strand, within Echvi_1044at 1205.408 kb on - strand, within Echvi_1044at 1205.418 kb on + strand, within Echvi_1044

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,203,011 - Echvi_1041 0.66 +2.5
1,203,012 + Echvi_1041 0.66 -1.7
1,203,012 + Echvi_1041 0.66 -0.4
1,203,012 + Echvi_1041 0.66 -0.5
1,203,012 + Echvi_1041 0.66 -0.6
1,203,012 + Echvi_1041 0.66 -0.1
1,203,012 + Echvi_1041 0.66 -0.4
1,203,013 - Echvi_1041 0.66 -1.1
1,203,013 - Echvi_1041 0.66 -1.6
1,203,013 - Echvi_1041 0.66 +0.0
1,203,013 - Echvi_1041 0.66 +0.5
1,203,017 + Echvi_1041 0.66 -0.8
1,203,017 + Echvi_1041 0.66 -1.7
1,203,018 - Echvi_1041 0.67 +1.1
1,203,018 - Echvi_1041 0.67 +0.8
1,203,072 + Echvi_1041 0.70 +2.3
1,203,136 + Echvi_1041 0.74 +3.2
1,203,137 - Echvi_1041 0.74 -0.4
1,203,148 + Echvi_1041 0.75 -1.5
1,203,149 - Echvi_1041 0.75 +1.7
1,203,149 - Echvi_1041 0.75 -0.3
1,203,149 - Echvi_1041 0.75 -0.1
1,203,223 - Echvi_1041 0.80 -3.2
1,203,223 - Echvi_1041 0.80 -0.8
1,203,223 - Echvi_1041 0.80 -2.8
1,203,316 + Echvi_1041 0.86 +1.4
1,203,316 + Echvi_1041 0.86 -0.6
1,203,316 + Echvi_1041 0.86 +2.1
1,203,316 + Echvi_1041 0.86 -1.7
1,203,316 + Echvi_1041 0.86 -0.7
1,203,317 - Echvi_1041 0.86 +2.8
1,203,317 - Echvi_1041 0.86 +1.6
1,203,317 - Echvi_1041 0.86 -1.6
1,203,317 - Echvi_1041 0.86 +1.6
1,203,317 - Echvi_1041 0.86 -2.1
1,203,317 - Echvi_1041 0.86 +0.5
1,203,317 - Echvi_1041 0.86 -0.1
1,203,317 - Echvi_1041 0.86 -0.6
1,203,317 - Echvi_1041 0.86 -3.3
1,203,317 - Echvi_1041 0.86 -0.2
1,203,317 - Echvi_1041 0.86 -0.3
1,203,319 - Echvi_1041 0.86 -0.4
1,203,319 - +4.2
1,203,328 + Echvi_1041 0.86 -2.8
1,203,329 - Echvi_1041 0.86 -2.2
1,203,340 + Echvi_1041 0.87 -2.0
1,203,340 + Echvi_1041 0.87 +0.6
1,203,341 - Echvi_1041 0.87 -2.0
1,203,341 - Echvi_1041 0.87 -2.7
1,203,356 - Echvi_1041 0.88 +0.1
1,203,356 - Echvi_1041 0.88 +0.1
1,203,356 - Echvi_1041 0.88 +2.0
1,203,357 + Echvi_1041 0.88 +0.8
1,203,357 + Echvi_1041 0.88 +0.6
1,203,358 - Echvi_1041 0.88 +1.2
1,203,358 - Echvi_1041 0.88 -1.0
1,203,358 - Echvi_1041 0.88 -1.9
1,203,358 - Echvi_1041 0.88 +0.5
1,203,417 + -1.1
1,203,418 - -2.0
1,203,492 + +0.3
1,203,493 - +1.9
1,203,493 - +1.6
1,203,493 - -0.6
1,203,493 - -1.5
1,203,552 + +1.1
1,203,574 + -1.7
1,203,574 + +0.6
1,203,575 - +0.2
1,203,617 - -0.1
1,203,617 - -2.3
1,203,617 - +0.6
1,203,617 - -0.4
1,203,619 - -1.5
1,203,621 + -4.0
1,203,632 + -1.0
1,203,634 + -1.1
1,203,634 + -2.2
1,203,634 + -1.6
1,203,634 + +0.2
1,203,634 + +0.7
1,203,635 - +0.7
1,203,635 - +0.4
1,203,635 - -3.3
1,203,655 - -2.5
1,203,678 + +1.2
1,203,678 + +2.5
1,203,678 + +0.6
1,203,678 + -1.7
1,203,679 - -2.4
1,203,746 + Echvi_1042 0.55 +0.9
1,203,746 + Echvi_1042 0.55 -1.2
1,203,775 + Echvi_1042 0.78 -2.8
1,203,775 + Echvi_1042 0.78 -1.3
1,203,803 + +0.7
1,203,803 + -1.8
1,203,848 + -1.7
1,203,849 - -1.1
1,203,849 - -3.3
1,203,852 + +1.0
1,203,853 - +1.2
1,203,947 + +0.9
1,203,947 + -1.0
1,203,948 - +1.6
1,203,968 - +0.9
1,203,968 - +0.3
1,203,968 - +4.8
1,203,968 - -2.2
1,204,036 + Echvi_1043 0.16 +1.9
1,204,047 + Echvi_1043 0.17 +1.4
1,204,047 + Echvi_1043 0.17 -1.4
1,204,048 - Echvi_1043 0.18 -2.4
1,204,109 + Echvi_1043 0.28 -0.4
1,204,110 - Echvi_1043 0.29 -1.6
1,204,150 + Echvi_1043 0.36 -3.3
1,204,151 - Echvi_1043 0.36 -3.5
1,204,151 - Echvi_1043 0.36 -1.1
1,204,151 - Echvi_1043 0.36 -2.4
1,204,239 + Echvi_1043 0.51 +1.1
1,204,241 + Echvi_1043 0.52 +0.2
1,204,242 - Echvi_1043 0.52 -1.2
1,204,399 - Echvi_1043 0.80 +3.3
1,204,399 - Echvi_1043 0.80 -0.4
1,204,403 - Echvi_1043 0.80 +0.5
1,204,413 + Echvi_1043 0.82 -0.1
1,204,414 - Echvi_1043 0.82 -3.5
1,204,417 + Echvi_1043 0.83 +0.2
1,204,417 + Echvi_1043 0.83 -1.1
1,204,417 + Echvi_1043 0.83 +1.2
1,204,417 + Echvi_1043 0.83 -4.0
1,204,418 - Echvi_1043 0.83 -2.2
1,204,418 - Echvi_1043 0.83 +1.3
1,204,418 - Echvi_1043 0.83 -1.1
1,204,418 - Echvi_1043 0.83 -0.1
1,204,418 - Echvi_1043 0.83 -0.1
1,204,418 - Echvi_1043 0.83 +1.5
1,204,418 - Echvi_1043 0.83 -3.4
1,204,502 + +0.8
1,204,524 - -4.7
1,204,559 + +0.7
1,204,560 - -0.1
1,204,560 - -0.6
1,204,659 + +0.9
1,204,660 - -0.2
1,204,660 - +0.6
1,204,666 + +3.7
1,204,667 - -1.1
1,204,680 + Echvi_1044 0.10 +2.1
1,204,680 + Echvi_1044 0.10 -1.2
1,204,716 - Echvi_1044 0.12 -1.6
1,204,813 + Echvi_1044 0.18 +0.6
1,204,813 + Echvi_1044 0.18 +1.6
1,204,813 + Echvi_1044 0.18 -1.6
1,204,813 + Echvi_1044 0.18 -1.1
1,204,813 + Echvi_1044 0.18 -3.8
1,204,813 + Echvi_1044 0.18 +1.7
1,204,813 + Echvi_1044 0.18 +1.2
1,204,813 + Echvi_1044 0.18 +2.7
1,204,813 + Echvi_1044 0.18 -0.2
1,204,813 + Echvi_1044 0.18 -1.7
1,204,813 + Echvi_1044 0.18 -1.7
1,204,814 - Echvi_1044 0.18 -0.4
1,204,814 - Echvi_1044 0.18 -0.6
1,204,814 - Echvi_1044 0.18 +0.8
1,204,814 - Echvi_1044 0.18 -1.9
1,204,814 - Echvi_1044 0.18 +1.1
1,204,943 + Echvi_1044 0.26 +0.0
1,204,982 - Echvi_1044 0.28 -1.8
1,204,987 + Echvi_1044 0.28 -0.8
1,204,987 + Echvi_1044 0.28 -3.1
1,204,987 + Echvi_1044 0.28 -0.4
1,204,987 + Echvi_1044 0.28 -1.4
1,204,987 + Echvi_1044 0.28 -1.4
1,204,987 + Echvi_1044 0.28 +0.6
1,204,987 + Echvi_1044 0.28 -1.4
1,204,987 + Echvi_1044 0.28 -2.0
1,204,987 + Echvi_1044 0.28 -0.8
1,204,987 + Echvi_1044 0.28 +0.3
1,204,988 - Echvi_1044 0.28 -2.5
1,204,988 - Echvi_1044 0.28 -3.2
1,204,988 - Echvi_1044 0.28 +0.2
1,204,988 - Echvi_1044 0.28 -1.9
1,205,003 + Echvi_1044 0.29 +2.1
1,205,004 - Echvi_1044 0.29 -2.1
1,205,090 - Echvi_1044 0.34 -0.2
1,205,173 + Echvi_1044 0.39 -1.4
1,205,174 - Echvi_1044 0.39 -1.1
1,205,176 + Echvi_1044 0.39 -0.1
1,205,176 + Echvi_1044 0.39 +0.9
1,205,177 - Echvi_1044 0.39 +1.7
1,205,177 - Echvi_1044 0.39 -0.8
1,205,245 + Echvi_1044 0.43 -2.7
1,205,270 + Echvi_1044 0.45 +0.7
1,205,331 + Echvi_1044 0.48 -2.3
1,205,331 + Echvi_1044 0.48 -1.2
1,205,331 + Echvi_1044 0.48 +1.2
1,205,331 + Echvi_1044 0.48 -0.3
1,205,332 - Echvi_1044 0.49 -1.2
1,205,332 - Echvi_1044 0.49 -3.3
1,205,332 - Echvi_1044 0.49 +3.2
1,205,332 - Echvi_1044 0.49 -3.2
1,205,333 + Echvi_1044 0.49 -1.9
1,205,333 + Echvi_1044 0.49 -2.4
1,205,334 - Echvi_1044 0.49 -1.2
1,205,334 - Echvi_1044 0.49 -0.6
1,205,335 + Echvi_1044 0.49 -1.0
1,205,335 + Echvi_1044 0.49 -0.7
1,205,335 + Echvi_1044 0.49 -2.5
1,205,336 - Echvi_1044 0.49 +1.0
1,205,344 - Echvi_1044 0.49 +0.5
1,205,373 - Echvi_1044 0.51 +1.6
1,205,396 + Echvi_1044 0.52 +0.7
1,205,396 + Echvi_1044 0.52 +0.5
1,205,405 - Echvi_1044 0.53 -1.4
1,205,407 + Echvi_1044 0.53 -0.6
1,205,407 + Echvi_1044 0.53 +0.9
1,205,407 + Echvi_1044 0.53 +2.9
1,205,407 + Echvi_1044 0.53 +0.9
1,205,408 - Echvi_1044 0.53 +2.8
1,205,408 - Echvi_1044 0.53 +1.6
1,205,408 - Echvi_1044 0.53 -1.9
1,205,418 + Echvi_1044 0.54 -0.8

Or see this region's nucleotide sequence