Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0704

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0702 and Echvi_0703 overlap by 23 nucleotidesEchvi_0703 and Echvi_0704 are separated by 128 nucleotidesEchvi_0704 and Echvi_0705 are separated by 122 nucleotidesEchvi_0705 and Echvi_0706 are separated by 99 nucleotidesEchvi_0706 and Echvi_0707 are separated by 102 nucleotides Echvi_0702: Echvi_0702 - hypothetical protein, at 794,894 to 796,072 _0702 Echvi_0703: Echvi_0703 - hypothetical protein, at 796,050 to 796,541 _0703 Echvi_0704: Echvi_0704 - hypothetical protein, at 796,670 to 797,131 _0704 Echvi_0705: Echvi_0705 - hypothetical protein, at 797,254 to 797,748 _0705 Echvi_0706: Echvi_0706 - hypothetical protein, at 797,848 to 797,946 _0706 Echvi_0707: Echvi_0707 - Uncharacterized protein conserved in bacteria, at 798,049 to 798,519 _0707 Position (kb) 796 797 798Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 795.676 kb on - strand, within Echvi_0702at 795.690 kb on + strand, within Echvi_0702at 795.691 kb on - strand, within Echvi_0702at 795.735 kb on + strand, within Echvi_0702at 795.743 kb on - strand, within Echvi_0702at 795.743 kb on - strand, within Echvi_0702at 795.770 kb on - strand, within Echvi_0702at 795.781 kb on + strand, within Echvi_0702at 795.801 kb on + strand, within Echvi_0702at 795.803 kb on + strand, within Echvi_0702at 795.809 kb on + strand, within Echvi_0702at 795.810 kb on - strand, within Echvi_0702at 795.813 kb on - strand, within Echvi_0702at 795.816 kb on + strand, within Echvi_0702at 795.827 kb on - strand, within Echvi_0702at 795.844 kb on + strand, within Echvi_0702at 795.845 kb on - strand, within Echvi_0702at 795.847 kb on + strand, within Echvi_0702at 795.847 kb on + strand, within Echvi_0702at 795.847 kb on + strand, within Echvi_0702at 795.847 kb on + strand, within Echvi_0702at 795.848 kb on - strand, within Echvi_0702at 795.848 kb on - strand, within Echvi_0702at 795.904 kb on + strand, within Echvi_0702at 795.905 kb on - strand, within Echvi_0702at 795.924 kb on + strand, within Echvi_0702at 795.926 kb on + strand, within Echvi_0702at 795.926 kb on + strand, within Echvi_0702at 795.926 kb on + strand, within Echvi_0702at 795.958 kb on - strandat 796.001 kb on - strandat 796.015 kb on + strandat 796.016 kb on - strandat 796.024 kb on - strandat 796.024 kb on - strandat 796.024 kb on - strandat 796.071 kb on - strandat 796.074 kb on - strandat 796.094 kb on - strandat 796.120 kb on + strand, within Echvi_0703at 796.167 kb on + strand, within Echvi_0703at 796.168 kb on - strand, within Echvi_0703at 796.174 kb on + strand, within Echvi_0703at 796.175 kb on - strand, within Echvi_0703at 796.175 kb on - strand, within Echvi_0703at 796.175 kb on - strand, within Echvi_0703at 796.178 kb on + strand, within Echvi_0703at 796.178 kb on + strand, within Echvi_0703at 796.179 kb on - strand, within Echvi_0703at 796.212 kb on + strand, within Echvi_0703at 796.213 kb on - strand, within Echvi_0703at 796.222 kb on + strand, within Echvi_0703at 796.222 kb on + strand, within Echvi_0703at 796.222 kb on + strand, within Echvi_0703at 796.232 kb on + strand, within Echvi_0703at 796.232 kb on + strand, within Echvi_0703at 796.257 kb on - strand, within Echvi_0703at 796.274 kb on + strand, within Echvi_0703at 796.275 kb on - strand, within Echvi_0703at 796.337 kb on - strand, within Echvi_0703at 796.337 kb on - strand, within Echvi_0703at 796.345 kb on - strand, within Echvi_0703at 796.401 kb on + strand, within Echvi_0703at 796.401 kb on + strand, within Echvi_0703at 796.401 kb on + strand, within Echvi_0703at 796.402 kb on - strand, within Echvi_0703at 796.433 kb on + strand, within Echvi_0703at 796.434 kb on - strand, within Echvi_0703at 796.434 kb on - strand, within Echvi_0703at 796.463 kb on + strand, within Echvi_0703at 796.464 kb on - strand, within Echvi_0703at 796.486 kb on + strand, within Echvi_0703at 796.487 kb on - strand, within Echvi_0703at 796.512 kb on - strandat 796.539 kb on + strandat 796.540 kb on - strandat 796.540 kb on - strandat 796.557 kb on - strandat 796.558 kb on + strandat 796.570 kb on + strandat 796.570 kb on + strandat 796.571 kb on - strandat 796.571 kb on - strandat 796.571 kb on - strandat 796.636 kb on + strandat 796.637 kb on - strandat 796.648 kb on + strandat 796.648 kb on + strandat 796.648 kb on + strandat 796.649 kb on - strandat 796.649 kb on - strandat 796.649 kb on - strandat 796.661 kb on + strandat 796.681 kb on + strandat 796.712 kb on - strandat 796.784 kb on - strand, within Echvi_0704at 796.784 kb on - strand, within Echvi_0704at 796.787 kb on + strand, within Echvi_0704at 796.787 kb on + strand, within Echvi_0704at 796.787 kb on + strand, within Echvi_0704at 796.788 kb on - strand, within Echvi_0704at 796.792 kb on - strand, within Echvi_0704at 796.797 kb on + strand, within Echvi_0704at 796.797 kb on + strand, within Echvi_0704at 796.798 kb on - strand, within Echvi_0704at 796.798 kb on - strand, within Echvi_0704at 796.826 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.931 kb on - strand, within Echvi_0704at 796.931 kb on - strand, within Echvi_0704at 796.936 kb on + strand, within Echvi_0704at 796.979 kb on - strand, within Echvi_0704at 797.003 kb on - strand, within Echvi_0704at 797.003 kb on - strand, within Echvi_0704at 797.003 kb on - strand, within Echvi_0704at 797.091 kb on - strandat 797.094 kb on + strandat 797.107 kb on + strandat 797.110 kb on + strandat 797.110 kb on + strandat 797.111 kb on - strandat 797.111 kb on - strandat 797.120 kb on - strandat 797.188 kb on - strandat 797.196 kb on + strandat 797.196 kb on + strandat 797.205 kb on + strandat 797.206 kb on - strandat 797.217 kb on + strandat 797.228 kb on + strandat 797.228 kb on + strandat 797.230 kb on + strandat 797.237 kb on + strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.238 kb on - strandat 797.277 kb on + strandat 797.314 kb on + strand, within Echvi_0705at 797.315 kb on - strand, within Echvi_0705at 797.344 kb on + strand, within Echvi_0705at 797.344 kb on + strand, within Echvi_0705at 797.345 kb on - strand, within Echvi_0705at 797.347 kb on - strand, within Echvi_0705at 797.347 kb on - strand, within Echvi_0705at 797.347 kb on - strand, within Echvi_0705at 797.352 kb on + strand, within Echvi_0705at 797.353 kb on - strand, within Echvi_0705at 797.362 kb on - strand, within Echvi_0705at 797.377 kb on - strand, within Echvi_0705at 797.393 kb on + strand, within Echvi_0705at 797.393 kb on + strand, within Echvi_0705at 797.409 kb on - strand, within Echvi_0705at 797.435 kb on + strand, within Echvi_0705at 797.435 kb on + strand, within Echvi_0705at 797.436 kb on - strand, within Echvi_0705at 797.436 kb on - strand, within Echvi_0705at 797.441 kb on - strand, within Echvi_0705at 797.461 kb on - strand, within Echvi_0705at 797.564 kb on + strand, within Echvi_0705at 797.570 kb on + strand, within Echvi_0705at 797.570 kb on + strand, within Echvi_0705at 797.571 kb on - strand, within Echvi_0705at 797.571 kb on - strand, within Echvi_0705at 797.571 kb on - strand, within Echvi_0705at 797.594 kb on + strand, within Echvi_0705at 797.594 kb on + strand, within Echvi_0705at 797.595 kb on - strand, within Echvi_0705at 797.608 kb on + strand, within Echvi_0705at 797.658 kb on - strand, within Echvi_0705at 797.658 kb on - strand, within Echvi_0705at 797.658 kb on - strand, within Echvi_0705at 797.708 kb on - strandat 797.717 kb on + strandat 797.723 kb on + strandat 797.723 kb on + strandat 797.724 kb on - strandat 797.724 kb on - strandat 797.724 kb on - strandat 797.724 kb on - strandat 797.724 kb on - strandat 797.747 kb on - strandat 797.823 kb on - strandat 797.946 kb on + strandat 797.950 kb on + strandat 797.993 kb on + strandat 798.035 kb on + strandat 798.035 kb on + strandat 798.039 kb on + strandat 798.039 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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795,676 - Echvi_0702 0.66 -2.7
795,690 + Echvi_0702 0.68 +1.6
795,691 - Echvi_0702 0.68 -1.2
795,735 + Echvi_0702 0.71 +2.3
795,743 - Echvi_0702 0.72 +1.4
795,743 - Echvi_0702 0.72 +1.0
795,770 - Echvi_0702 0.74 -1.7
795,781 + Echvi_0702 0.75 -1.6
795,801 + Echvi_0702 0.77 +1.9
795,803 + Echvi_0702 0.77 +0.5
795,809 + Echvi_0702 0.78 -2.4
795,810 - Echvi_0702 0.78 +0.5
795,813 - Echvi_0702 0.78 -0.1
795,816 + Echvi_0702 0.78 -1.8
795,827 - Echvi_0702 0.79 -0.6
795,844 + Echvi_0702 0.81 +0.4
795,845 - Echvi_0702 0.81 -3.1
795,847 + Echvi_0702 0.81 +1.6
795,847 + Echvi_0702 0.81 +2.8
795,847 + Echvi_0702 0.81 +2.4
795,847 + Echvi_0702 0.81 -2.6
795,848 - Echvi_0702 0.81 -3.2
795,848 - Echvi_0702 0.81 +1.7
795,904 + Echvi_0702 0.86 +0.7
795,905 - Echvi_0702 0.86 +0.1
795,924 + Echvi_0702 0.87 -3.6
795,926 + Echvi_0702 0.88 -1.4
795,926 + Echvi_0702 0.88 +0.9
795,926 + Echvi_0702 0.88 +2.3
795,958 - +0.1
796,001 - +1.8
796,015 + +1.1
796,016 - -0.9
796,024 - -0.4
796,024 - +0.0
796,024 - +1.8
796,071 - +0.2
796,074 - -0.2
796,094 - +0.6
796,120 + Echvi_0703 0.14 -0.0
796,167 + Echvi_0703 0.24 +1.9
796,168 - Echvi_0703 0.24 -1.6
796,174 + Echvi_0703 0.25 -1.2
796,175 - Echvi_0703 0.25 -1.7
796,175 - Echvi_0703 0.25 -0.1
796,175 - Echvi_0703 0.25 +0.5
796,178 + Echvi_0703 0.26 -1.0
796,178 + Echvi_0703 0.26 +1.1
796,179 - Echvi_0703 0.26 -2.0
796,212 + Echvi_0703 0.33 +2.2
796,213 - Echvi_0703 0.33 +3.0
796,222 + Echvi_0703 0.35 -0.8
796,222 + Echvi_0703 0.35 +1.4
796,222 + Echvi_0703 0.35 +1.5
796,232 + Echvi_0703 0.37 -0.7
796,232 + Echvi_0703 0.37 -1.3
796,257 - Echvi_0703 0.42 -0.2
796,274 + Echvi_0703 0.46 +2.8
796,275 - Echvi_0703 0.46 +0.9
796,337 - Echvi_0703 0.58 +1.7
796,337 - Echvi_0703 0.58 +1.9
796,345 - Echvi_0703 0.60 +0.8
796,401 + Echvi_0703 0.71 +0.6
796,401 + Echvi_0703 0.71 -0.6
796,401 + Echvi_0703 0.71 +1.4
796,402 - Echvi_0703 0.72 +0.6
796,433 + Echvi_0703 0.78 +0.9
796,434 - Echvi_0703 0.78 -0.3
796,434 - Echvi_0703 0.78 -2.3
796,463 + Echvi_0703 0.84 -0.1
796,464 - Echvi_0703 0.84 -0.1
796,486 + Echvi_0703 0.89 -2.6
796,487 - Echvi_0703 0.89 -2.3
796,512 - -1.4
796,539 + -0.3
796,540 - +1.5
796,540 - -1.4
796,557 - +3.8
796,558 + -1.7
796,570 + +0.4
796,570 + -1.4
796,571 - -1.2
796,571 - -0.2
796,571 - -0.4
796,636 + -0.4
796,637 - -2.6
796,648 + +2.3
796,648 + +1.0
796,648 + +0.8
796,649 - -0.4
796,649 - -0.1
796,649 - -0.7
796,661 + -0.9
796,681 + -2.6
796,712 - +1.1
796,784 - Echvi_0704 0.25 +0.8
796,784 - Echvi_0704 0.25 -0.1
796,787 + Echvi_0704 0.25 +2.0
796,787 + Echvi_0704 0.25 -0.6
796,787 + Echvi_0704 0.25 +1.7
796,788 - Echvi_0704 0.26 +1.0
796,792 - Echvi_0704 0.26 +2.1
796,797 + Echvi_0704 0.27 +0.6
796,797 + Echvi_0704 0.27 +3.2
796,798 - Echvi_0704 0.28 +2.4
796,798 - Echvi_0704 0.28 -1.6
796,826 + Echvi_0704 0.34 -0.1
796,864 + Echvi_0704 0.42 +1.1
796,864 + Echvi_0704 0.42 +1.2
796,864 + Echvi_0704 0.42 +0.7
796,864 + Echvi_0704 0.42 -0.2
796,927 + Echvi_0704 0.56 -1.5
796,927 + Echvi_0704 0.56 +1.3
796,927 + Echvi_0704 0.56 -1.5
796,927 + Echvi_0704 0.56 +0.4
796,931 - Echvi_0704 0.56 +2.4
796,931 - Echvi_0704 0.56 -2.2
796,936 + Echvi_0704 0.58 +2.4
796,979 - Echvi_0704 0.67 -2.9
797,003 - Echvi_0704 0.72 +0.8
797,003 - Echvi_0704 0.72 +1.5
797,003 - Echvi_0704 0.72 -1.5
797,091 - -3.0
797,094 + -1.4
797,107 + -1.5
797,110 + +0.7
797,110 + -2.2
797,111 - +1.2
797,111 - +1.7
797,120 - -0.4
797,188 - +1.1
797,196 + +2.3
797,196 + -1.7
797,205 + +1.7
797,206 - -2.3
797,217 + -1.4
797,228 + +3.1
797,228 + -0.5
797,230 + +0.7
797,237 + -3.3
797,238 - -1.9
797,238 - +0.2
797,238 - -1.7
797,238 - -1.5
797,238 - -1.0
797,238 - +3.0
797,277 + -0.4
797,314 + Echvi_0705 0.12 -0.6
797,315 - Echvi_0705 0.12 +2.3
797,344 + Echvi_0705 0.18 +2.6
797,344 + Echvi_0705 0.18 -0.4
797,345 - Echvi_0705 0.18 +2.9
797,347 - Echvi_0705 0.19 +0.2
797,347 - Echvi_0705 0.19 +2.7
797,347 - Echvi_0705 0.19 +0.4
797,352 + Echvi_0705 0.20 +2.0
797,353 - Echvi_0705 0.20 -0.4
797,362 - Echvi_0705 0.22 -0.4
797,377 - Echvi_0705 0.25 -2.6
797,393 + Echvi_0705 0.28 +1.6
797,393 + Echvi_0705 0.28 +2.7
797,409 - Echvi_0705 0.31 -1.0
797,435 + Echvi_0705 0.37 -2.9
797,435 + Echvi_0705 0.37 +1.5
797,436 - Echvi_0705 0.37 -3.0
797,436 - Echvi_0705 0.37 +2.2
797,441 - Echvi_0705 0.38 +0.5
797,461 - Echvi_0705 0.42 -2.0
797,564 + Echvi_0705 0.63 -0.6
797,570 + Echvi_0705 0.64 +4.1
797,570 + Echvi_0705 0.64 -0.7
797,571 - Echvi_0705 0.64 -0.9
797,571 - Echvi_0705 0.64 +1.8
797,571 - Echvi_0705 0.64 -2.1
797,594 + Echvi_0705 0.69 -0.2
797,594 + Echvi_0705 0.69 +2.1
797,595 - Echvi_0705 0.69 -1.8
797,608 + Echvi_0705 0.72 -3.6
797,658 - Echvi_0705 0.82 -1.7
797,658 - Echvi_0705 0.82 +1.2
797,658 - Echvi_0705 0.82 +1.0
797,708 - -1.8
797,717 + +2.3
797,723 + -1.2
797,723 + -0.1
797,724 - -1.8
797,724 - -1.2
797,724 - -1.4
797,724 - -3.5
797,724 - -2.0
797,747 - +0.8
797,823 - -2.6
797,946 + -1.6
797,950 + -0.8
797,993 + +0.2
798,035 + -1.0
798,035 + +0.1
798,039 + -0.9
798,039 + -0.4

Or see this region's nucleotide sequence