Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0377

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0375 and Echvi_0376 are separated by 300 nucleotidesEchvi_0376 and Echvi_0377 are separated by 63 nucleotidesEchvi_0377 and Echvi_0378 are separated by 67 nucleotidesEchvi_0378 and Echvi_0379 are separated by 166 nucleotides Echvi_0375: Echvi_0375 - tRNA, at 402,914 to 402,998 _0375 Echvi_0376: Echvi_0376 - hypothetical protein, at 403,299 to 403,862 _0376 Echvi_0377: Echvi_0377 - hypothetical protein, at 403,926 to 404,474 _0377 Echvi_0378: Echvi_0378 - hypothetical protein, at 404,542 to 404,688 _0378 Echvi_0379: Echvi_0379 - FOG: Transposase and inactivated derivatives, at 404,855 to 406,087 _0379 Position (kb) 403 404 405Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 403.129 kb on - strandat 403.131 kb on + strandat 403.132 kb on - strandat 403.148 kb on - strandat 403.184 kb on + strandat 403.243 kb on + strandat 403.243 kb on + strandat 403.276 kb on + strandat 403.277 kb on - strandat 403.350 kb on - strandat 403.350 kb on - strandat 403.350 kb on - strandat 403.379 kb on + strand, within Echvi_0376at 403.380 kb on - strand, within Echvi_0376at 403.380 kb on - strand, within Echvi_0376at 403.391 kb on - strand, within Echvi_0376at 403.391 kb on - strand, within Echvi_0376at 403.403 kb on + strand, within Echvi_0376at 403.405 kb on + strand, within Echvi_0376at 403.405 kb on + strand, within Echvi_0376at 403.405 kb on + strand, within Echvi_0376at 403.406 kb on - strand, within Echvi_0376at 403.406 kb on - strand, within Echvi_0376at 403.406 kb on - strand, within Echvi_0376at 403.409 kb on + strand, within Echvi_0376at 403.412 kb on + strand, within Echvi_0376at 403.412 kb on + strand, within Echvi_0376at 403.413 kb on - strand, within Echvi_0376at 403.448 kb on + strand, within Echvi_0376at 403.448 kb on + strand, within Echvi_0376at 403.449 kb on - strand, within Echvi_0376at 403.491 kb on + strand, within Echvi_0376at 403.492 kb on - strand, within Echvi_0376at 403.521 kb on - strand, within Echvi_0376at 403.526 kb on - strand, within Echvi_0376at 403.526 kb on - strand, within Echvi_0376at 403.526 kb on - strand, within Echvi_0376at 403.526 kb on - strand, within Echvi_0376at 403.534 kb on - strand, within Echvi_0376at 403.553 kb on - strand, within Echvi_0376at 403.591 kb on + strand, within Echvi_0376at 403.653 kb on + strand, within Echvi_0376at 403.666 kb on + strand, within Echvi_0376at 403.671 kb on - strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.674 kb on + strand, within Echvi_0376at 403.675 kb on - strandat 403.676 kb on + strand, within Echvi_0376at 403.676 kb on + strand, within Echvi_0376at 403.679 kb on + strand, within Echvi_0376at 403.757 kb on + strand, within Echvi_0376at 403.786 kb on + strand, within Echvi_0376at 403.786 kb on + strand, within Echvi_0376at 403.787 kb on - strand, within Echvi_0376at 403.823 kb on + strandat 403.824 kb on - strandat 403.862 kb on + strandat 403.862 kb on + strandat 403.882 kb on + strandat 403.883 kb on - strandat 403.883 kb on - strandat 403.944 kb on - strandat 404.000 kb on + strand, within Echvi_0377at 404.001 kb on - strand, within Echvi_0377at 404.001 kb on - strand, within Echvi_0377at 404.004 kb on + strand, within Echvi_0377at 404.004 kb on + strand, within Echvi_0377at 404.004 kb on + strand, within Echvi_0377at 404.005 kb on - strand, within Echvi_0377at 404.069 kb on + strand, within Echvi_0377at 404.069 kb on + strand, within Echvi_0377at 404.079 kb on + strand, within Echvi_0377at 404.080 kb on - strand, within Echvi_0377at 404.105 kb on + strand, within Echvi_0377at 404.127 kb on + strand, within Echvi_0377at 404.127 kb on + strand, within Echvi_0377at 404.189 kb on + strand, within Echvi_0377at 404.190 kb on - strand, within Echvi_0377at 404.209 kb on + strand, within Echvi_0377at 404.210 kb on - strand, within Echvi_0377at 404.348 kb on + strand, within Echvi_0377at 404.348 kb on + strand, within Echvi_0377at 404.360 kb on + strand, within Echvi_0377at 404.360 kb on + strand, within Echvi_0377at 404.381 kb on + strand, within Echvi_0377at 404.381 kb on + strand, within Echvi_0377at 404.381 kb on + strand, within Echvi_0377at 404.426 kb on - strandat 404.429 kb on + strandat 404.433 kb on + strandat 404.433 kb on + strandat 404.487 kb on + strandat 404.493 kb on + strandat 404.493 kb on + strandat 404.523 kb on + strandat 404.618 kb on + strand, within Echvi_0378at 404.619 kb on - strand, within Echvi_0378at 404.619 kb on - strand, within Echvi_0378at 404.621 kb on + strand, within Echvi_0378at 404.622 kb on - strand, within Echvi_0378at 404.622 kb on - strand, within Echvi_0378at 404.674 kb on - strandat 404.674 kb on - strandat 404.676 kb on - strandat 404.676 kb on - strandat 404.679 kb on - strandat 404.687 kb on - strandat 404.704 kb on + strandat 404.750 kb on - strandat 404.803 kb on - strandat 404.803 kb on - strandat 404.807 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
403,129 - +1.4
403,131 + +0.0
403,132 - +0.2
403,148 - -2.5
403,184 + +1.6
403,243 + +3.3
403,243 + +4.1
403,276 + -1.4
403,277 - -1.3
403,350 - +1.4
403,350 - +0.5
403,350 - +0.1
403,379 + Echvi_0376 0.14 -3.5
403,380 - Echvi_0376 0.14 -1.1
403,380 - Echvi_0376 0.14 -1.2
403,391 - Echvi_0376 0.16 +2.2
403,391 - Echvi_0376 0.16 -2.9
403,403 + Echvi_0376 0.18 +0.2
403,405 + Echvi_0376 0.19 +0.1
403,405 + Echvi_0376 0.19 -0.2
403,405 + Echvi_0376 0.19 +2.3
403,406 - Echvi_0376 0.19 -1.1
403,406 - Echvi_0376 0.19 -3.0
403,406 - Echvi_0376 0.19 -2.9
403,409 + Echvi_0376 0.20 -1.6
403,412 + Echvi_0376 0.20 +1.4
403,412 + Echvi_0376 0.20 +1.7
403,413 - Echvi_0376 0.20 -3.1
403,448 + Echvi_0376 0.26 +0.4
403,448 + Echvi_0376 0.26 +0.6
403,449 - Echvi_0376 0.27 -1.5
403,491 + Echvi_0376 0.34 -2.1
403,492 - Echvi_0376 0.34 +3.4
403,521 - Echvi_0376 0.39 +4.0
403,526 - Echvi_0376 0.40 -3.7
403,526 - Echvi_0376 0.40 +0.5
403,526 - Echvi_0376 0.40 +0.3
403,526 - Echvi_0376 0.40 -2.5
403,534 - Echvi_0376 0.42 +0.8
403,553 - Echvi_0376 0.45 -1.7
403,591 + Echvi_0376 0.52 -2.3
403,653 + Echvi_0376 0.63 +0.0
403,666 + Echvi_0376 0.65 -0.9
403,671 - Echvi_0376 0.66 +0.7
403,674 + Echvi_0376 0.66 -1.3
403,674 + Echvi_0376 0.66 +1.6
403,674 + Echvi_0376 0.66 +1.0
403,674 + Echvi_0376 0.66 +2.2
403,674 + Echvi_0376 0.66 +1.5
403,675 - +0.9
403,676 + Echvi_0376 0.67 +2.9
403,676 + Echvi_0376 0.67 -0.0
403,679 + Echvi_0376 0.67 -1.8
403,757 + Echvi_0376 0.81 -1.7
403,786 + Echvi_0376 0.86 -0.1
403,786 + Echvi_0376 0.86 +3.1
403,787 - Echvi_0376 0.87 +1.7
403,823 + +0.5
403,824 - -1.9
403,862 + +3.3
403,862 + +2.0
403,882 + -0.6
403,883 - -1.5
403,883 - -2.5
403,944 - +0.8
404,000 + Echvi_0377 0.13 -0.9
404,001 - Echvi_0377 0.14 -0.4
404,001 - Echvi_0377 0.14 -3.8
404,004 + Echvi_0377 0.14 -2.8
404,004 + Echvi_0377 0.14 -0.3
404,004 + Echvi_0377 0.14 -1.3
404,005 - Echvi_0377 0.14 +0.9
404,069 + Echvi_0377 0.26 +2.3
404,069 + Echvi_0377 0.26 -2.1
404,079 + Echvi_0377 0.28 +1.9
404,080 - Echvi_0377 0.28 +1.6
404,105 + Echvi_0377 0.33 -1.3
404,127 + Echvi_0377 0.37 -1.2
404,127 + Echvi_0377 0.37 -1.2
404,189 + Echvi_0377 0.48 -1.2
404,190 - Echvi_0377 0.48 +0.9
404,209 + Echvi_0377 0.52 -1.4
404,210 - Echvi_0377 0.52 -2.7
404,348 + Echvi_0377 0.77 +1.4
404,348 + Echvi_0377 0.77 +0.9
404,360 + Echvi_0377 0.79 -0.6
404,360 + Echvi_0377 0.79 +1.0
404,381 + Echvi_0377 0.83 +0.2
404,381 + Echvi_0377 0.83 -3.2
404,381 + Echvi_0377 0.83 -0.5
404,426 - +2.1
404,429 + +1.4
404,433 + +2.2
404,433 + +0.0
404,487 + -2.5
404,493 + +1.1
404,493 + +1.0
404,523 + -2.2
404,618 + Echvi_0378 0.52 -1.1
404,619 - Echvi_0378 0.52 +1.5
404,619 - Echvi_0378 0.52 -0.7
404,621 + Echvi_0378 0.54 -2.2
404,622 - Echvi_0378 0.54 -1.3
404,622 - Echvi_0378 0.54 -1.6
404,674 - +0.7
404,674 - +1.3
404,676 - -0.8
404,676 - -2.1
404,679 - +2.3
404,687 - -1.8
404,704 + -2.5
404,750 - +1.3
404,803 - -1.6
404,803 - +3.9
404,807 - +0.4

Or see this region's nucleotide sequence