Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0331

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0330 and Echvi_0331 are separated by 281 nucleotidesEchvi_0331 and Echvi_0332 are separated by 386 nucleotides Echvi_0330: Echvi_0330 - hypothetical protein, at 346,277 to 347,089 _0330 Echvi_0331: Echvi_0331 - Uncharacterized conserved protein, at 347,371 to 348,957 _0331 Echvi_0332: Echvi_0332 - Zn-dependent protease with chaperone function, at 349,344 to 350,576 _0332 Position (kb) 347 348 349Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 346.378 kb on - strand, within Echvi_0330at 346.562 kb on - strand, within Echvi_0330at 346.606 kb on - strand, within Echvi_0330at 346.938 kb on + strand, within Echvi_0330at 346.968 kb on + strand, within Echvi_0330at 346.968 kb on + strand, within Echvi_0330at 346.968 kb on + strand, within Echvi_0330at 346.969 kb on - strand, within Echvi_0330at 346.969 kb on - strand, within Echvi_0330at 346.978 kb on + strand, within Echvi_0330at 346.978 kb on + strand, within Echvi_0330at 347.072 kb on - strandat 347.075 kb on + strandat 347.185 kb on + strandat 347.186 kb on - strandat 347.204 kb on + strandat 347.271 kb on + strandat 347.276 kb on - strandat 347.276 kb on - strandat 347.276 kb on - strandat 347.287 kb on - strandat 347.294 kb on - strandat 347.308 kb on - strandat 347.355 kb on + strandat 347.356 kb on - strandat 347.365 kb on + strandat 347.532 kb on + strand, within Echvi_0331at 347.533 kb on - strand, within Echvi_0331at 347.537 kb on + strand, within Echvi_0331at 347.538 kb on - strand, within Echvi_0331at 347.556 kb on - strand, within Echvi_0331at 347.630 kb on + strand, within Echvi_0331at 347.631 kb on - strand, within Echvi_0331at 347.631 kb on - strand, within Echvi_0331at 347.756 kb on + strand, within Echvi_0331at 347.855 kb on + strand, within Echvi_0331at 347.855 kb on + strand, within Echvi_0331at 347.855 kb on + strand, within Echvi_0331at 347.856 kb on - strand, within Echvi_0331at 348.231 kb on - strand, within Echvi_0331at 348.281 kb on - strand, within Echvi_0331at 348.299 kb on + strand, within Echvi_0331at 348.299 kb on + strand, within Echvi_0331at 348.299 kb on + strand, within Echvi_0331at 348.309 kb on - strand, within Echvi_0331at 348.334 kb on + strand, within Echvi_0331at 348.568 kb on - strand, within Echvi_0331at 348.588 kb on - strand, within Echvi_0331at 348.588 kb on - strand, within Echvi_0331at 348.687 kb on + strand, within Echvi_0331at 348.687 kb on + strand, within Echvi_0331at 348.688 kb on - strand, within Echvi_0331at 348.688 kb on - strand, within Echvi_0331at 348.688 kb on - strand, within Echvi_0331at 348.740 kb on + strand, within Echvi_0331at 348.741 kb on - strand, within Echvi_0331at 348.882 kb on + strandat 348.882 kb on + strandat 348.883 kb on - strandat 348.888 kb on + strandat 348.934 kb on + strandat 348.935 kb on - strandat 348.938 kb on - strandat 348.953 kb on - strandat 348.958 kb on - strandat 348.976 kb on + strandat 348.976 kb on + strandat 348.984 kb on + strandat 349.038 kb on + strandat 349.084 kb on - strandat 349.134 kb on + strandat 349.135 kb on - strandat 349.140 kb on - strandat 349.231 kb on + strandat 349.231 kb on + strandat 349.237 kb on + strandat 349.238 kb on - strandat 349.273 kb on + strandat 349.274 kb on - strandat 349.306 kb on + strandat 349.307 kb on - strandat 349.307 kb on - strandat 349.307 kb on - strandat 349.345 kb on + strandat 349.346 kb on - strandat 349.483 kb on + strand, within Echvi_0332at 349.499 kb on - strand, within Echvi_0332at 349.581 kb on + strand, within Echvi_0332at 349.581 kb on + strand, within Echvi_0332at 349.582 kb on - strand, within Echvi_0332at 349.582 kb on - strand, within Echvi_0332at 349.722 kb on - strand, within Echvi_0332at 349.733 kb on + strand, within Echvi_0332at 349.733 kb on + strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.734 kb on - strand, within Echvi_0332at 349.736 kb on - strand, within Echvi_0332at 349.736 kb on - strand, within Echvi_0332at 349.781 kb on + strand, within Echvi_0332at 349.781 kb on + strand, within Echvi_0332at 349.781 kb on + strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.782 kb on - strand, within Echvi_0332at 349.800 kb on - strand, within Echvi_0332at 349.805 kb on - strand, within Echvi_0332at 349.805 kb on - strand, within Echvi_0332at 349.921 kb on + strand, within Echvi_0332

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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346,378 - Echvi_0330 0.12 +1.1
346,562 - Echvi_0330 0.35 -2.1
346,606 - Echvi_0330 0.40 +0.2
346,938 + Echvi_0330 0.81 +1.8
346,968 + Echvi_0330 0.85 -1.9
346,968 + Echvi_0330 0.85 -2.0
346,968 + Echvi_0330 0.85 -1.7
346,969 - Echvi_0330 0.85 -0.0
346,969 - Echvi_0330 0.85 -2.6
346,978 + Echvi_0330 0.86 -1.9
346,978 + Echvi_0330 0.86 +3.0
347,072 - +0.2
347,075 + +0.7
347,185 + +0.6
347,186 - -2.5
347,204 + -0.4
347,271 + -0.1
347,276 - -0.0
347,276 - -3.3
347,276 - -1.5
347,287 - -3.2
347,294 - -2.5
347,308 - +2.3
347,355 + -2.0
347,356 - -1.9
347,365 + +2.5
347,532 + Echvi_0331 0.10 +0.3
347,533 - Echvi_0331 0.10 -1.0
347,537 + Echvi_0331 0.10 +0.3
347,538 - Echvi_0331 0.11 -0.0
347,556 - Echvi_0331 0.12 +1.1
347,630 + Echvi_0331 0.16 -0.3
347,631 - Echvi_0331 0.16 -3.4
347,631 - Echvi_0331 0.16 +1.2
347,756 + Echvi_0331 0.24 -0.0
347,855 + Echvi_0331 0.30 -2.0
347,855 + Echvi_0331 0.30 +1.1
347,855 + Echvi_0331 0.30 +5.5
347,856 - Echvi_0331 0.31 -2.4
348,231 - Echvi_0331 0.54 -0.5
348,281 - Echvi_0331 0.57 -2.0
348,299 + Echvi_0331 0.58 -2.8
348,299 + Echvi_0331 0.58 -0.1
348,299 + Echvi_0331 0.58 +1.3
348,309 - Echvi_0331 0.59 -3.6
348,334 + Echvi_0331 0.61 +0.5
348,568 - Echvi_0331 0.75 -1.3
348,588 - Echvi_0331 0.77 +0.5
348,588 - Echvi_0331 0.77 +0.8
348,687 + Echvi_0331 0.83 +2.2
348,687 + Echvi_0331 0.83 +1.0
348,688 - Echvi_0331 0.83 -1.6
348,688 - Echvi_0331 0.83 -0.4
348,688 - Echvi_0331 0.83 -3.2
348,740 + Echvi_0331 0.86 -2.1
348,741 - Echvi_0331 0.86 -1.6
348,882 + -2.6
348,882 + +1.3
348,883 - -2.7
348,888 + -1.4
348,934 + -1.5
348,935 - -0.1
348,938 - +2.7
348,953 - -1.4
348,958 - +1.4
348,976 + -2.2
348,976 + -0.8
348,984 + -0.0
349,038 + +0.2
349,084 - +0.2
349,134 + -1.9
349,135 - +1.0
349,140 - -2.5
349,231 + +0.1
349,231 + +0.5
349,237 + +1.3
349,238 - +0.5
349,273 + +0.2
349,274 - +0.1
349,306 + -0.3
349,307 - +1.9
349,307 - +0.2
349,307 - -0.0
349,345 + +2.2
349,346 - -1.3
349,483 + Echvi_0332 0.11 -1.9
349,499 - Echvi_0332 0.13 -3.0
349,581 + Echvi_0332 0.19 +1.2
349,581 + Echvi_0332 0.19 -3.9
349,582 - Echvi_0332 0.19 +0.5
349,582 - Echvi_0332 0.19 -0.3
349,722 - Echvi_0332 0.31 +1.5
349,733 + Echvi_0332 0.32 +0.6
349,733 + Echvi_0332 0.32 +1.5
349,734 - Echvi_0332 0.32 +1.8
349,734 - Echvi_0332 0.32 -0.0
349,734 - Echvi_0332 0.32 +0.2
349,734 - Echvi_0332 0.32 +0.5
349,734 - Echvi_0332 0.32 -2.9
349,736 - Echvi_0332 0.32 -2.2
349,736 - Echvi_0332 0.32 -3.3
349,781 + Echvi_0332 0.35 +0.1
349,781 + Echvi_0332 0.35 -2.7
349,781 + Echvi_0332 0.35 +0.7
349,782 - Echvi_0332 0.36 -2.7
349,782 - Echvi_0332 0.36 -3.6
349,782 - Echvi_0332 0.36 +1.9
349,782 - Echvi_0332 0.36 -1.3
349,782 - Echvi_0332 0.36 -1.2
349,800 - Echvi_0332 0.37 +0.6
349,805 - Echvi_0332 0.37 +3.7
349,805 - Echvi_0332 0.37 -0.8
349,921 + Echvi_0332 0.47 +1.8

Or see this region's nucleotide sequence