Experiment: m.b. Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20245 and CA264_20250 are separated by 4 nucleotides CA264_20250 and CA264_20255 are separated by 64 nucleotides CA264_20255 and CA264_20260 overlap by 4 nucleotides CA264_20260 and CA264_20265 overlap by 26 nucleotides
CA264_20245: CA264_20245 - hypothetical protein, at 4,670,956 to 4,671,810
_20245
CA264_20250: CA264_20250 - transcriptional regulator, at 4,671,815 to 4,672,255
_20250
CA264_20255: CA264_20255 - hypothetical protein, at 4,672,320 to 4,672,859
_20255
CA264_20260: CA264_20260 - hypothetical protein, at 4,672,856 to 4,673,812
_20260
CA264_20265: CA264_20265 - hypothetical protein, at 4,673,787 to 4,674,179
_20265
Position (kb)
4672
4673 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4671.320 kb on - strand, within CA264_20245 at 4671.320 kb on - strand, within CA264_20245 at 4671.330 kb on + strand, within CA264_20245 at 4671.341 kb on - strand, within CA264_20245 at 4671.409 kb on + strand, within CA264_20245 at 4671.410 kb on - strand, within CA264_20245 at 4671.430 kb on + strand, within CA264_20245 at 4671.431 kb on - strand, within CA264_20245 at 4671.431 kb on - strand, within CA264_20245 at 4671.475 kb on - strand, within CA264_20245 at 4671.512 kb on - strand, within CA264_20245 at 4671.627 kb on + strand, within CA264_20245 at 4671.685 kb on + strand, within CA264_20245 at 4671.686 kb on - strand, within CA264_20245 at 4671.686 kb on - strand, within CA264_20245 at 4671.705 kb on - strand, within CA264_20245 at 4671.726 kb on - strand at 4671.756 kb on + strand at 4671.756 kb on + strand at 4671.770 kb on + strand at 4671.797 kb on + strand at 4671.803 kb on + strand at 4671.804 kb on - strand at 4671.808 kb on + strand at 4671.809 kb on - strand at 4671.809 kb on - strand at 4671.809 kb on - strand at 4671.809 kb on - strand at 4671.814 kb on + strand at 4671.826 kb on - strand at 4671.826 kb on - strand at 4671.831 kb on + strand at 4671.888 kb on + strand, within CA264_20250 at 4671.963 kb on + strand, within CA264_20250 at 4671.963 kb on + strand, within CA264_20250 at 4671.963 kb on + strand, within CA264_20250 at 4671.964 kb on - strand, within CA264_20250 at 4672.019 kb on - strand, within CA264_20250 at 4672.022 kb on - strand, within CA264_20250 at 4672.039 kb on + strand, within CA264_20250 at 4672.039 kb on + strand, within CA264_20250 at 4672.040 kb on - strand, within CA264_20250 at 4672.104 kb on + strand, within CA264_20250 at 4672.105 kb on - strand, within CA264_20250 at 4672.105 kb on - strand, within CA264_20250 at 4672.159 kb on - strand, within CA264_20250 at 4672.167 kb on + strand, within CA264_20250 at 4672.167 kb on + strand, within CA264_20250 at 4672.191 kb on - strand, within CA264_20250 at 4672.243 kb on - strand at 4672.253 kb on + strand at 4672.282 kb on - strand at 4672.312 kb on + strand at 4672.312 kb on + strand at 4672.313 kb on - strand at 4672.313 kb on - strand at 4672.313 kb on - strand at 4672.313 kb on - strand at 4672.316 kb on + strand at 4672.317 kb on - strand at 4672.321 kb on + strand at 4672.335 kb on + strand at 4672.457 kb on - strand, within CA264_20255 at 4672.457 kb on - strand, within CA264_20255 at 4672.481 kb on + strand, within CA264_20255 at 4672.482 kb on - strand, within CA264_20255 at 4672.509 kb on + strand, within CA264_20255 at 4672.510 kb on - strand, within CA264_20255 at 4672.591 kb on + strand, within CA264_20255 at 4672.628 kb on + strand, within CA264_20255 at 4672.658 kb on - strand, within CA264_20255 at 4672.729 kb on + strand, within CA264_20255 at 4672.730 kb on - strand, within CA264_20255 at 4672.730 kb on - strand, within CA264_20255 at 4672.860 kb on - strand at 4672.976 kb on - strand, within CA264_20260 at 4672.991 kb on - strand, within CA264_20260 at 4673.026 kb on + strand, within CA264_20260 at 4673.026 kb on + strand, within CA264_20260 at 4673.038 kb on + strand, within CA264_20260 at 4673.039 kb on - strand, within CA264_20260 at 4673.113 kb on + strand, within CA264_20260 at 4673.211 kb on + strand, within CA264_20260 at 4673.212 kb on - strand, within CA264_20260 at 4673.212 kb on - strand, within CA264_20260 at 4673.212 kb on - strand, within CA264_20260 at 4673.217 kb on + strand, within CA264_20260 at 4673.376 kb on + strand, within CA264_20260 at 4673.376 kb on + strand, within CA264_20260 at 4673.380 kb on - strand, within CA264_20260 at 4673.461 kb on - strand, within CA264_20260 at 4673.559 kb on + strand, within CA264_20260 at 4673.560 kb on - strand, within CA264_20260 at 4673.713 kb on + strand, within CA264_20260 at 4673.763 kb on + strand at 4673.769 kb on - strand at 4673.824 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml remove 4,671,320 - CA264_20245 0.43 +0.3 4,671,320 - CA264_20245 0.43 +0.3 4,671,330 + CA264_20245 0.44 +0.7 4,671,341 - CA264_20245 0.45 -0.3 4,671,409 + CA264_20245 0.53 -0.1 4,671,410 - CA264_20245 0.53 -0.3 4,671,430 + CA264_20245 0.55 -0.3 4,671,431 - CA264_20245 0.56 -0.1 4,671,431 - CA264_20245 0.56 +0.7 4,671,475 - CA264_20245 0.61 +0.5 4,671,512 - CA264_20245 0.65 -0.0 4,671,627 + CA264_20245 0.78 -0.1 4,671,685 + CA264_20245 0.85 -1.2 4,671,686 - CA264_20245 0.85 +0.8 4,671,686 - CA264_20245 0.85 +1.6 4,671,705 - CA264_20245 0.88 -1.8 4,671,726 - -0.0 4,671,756 + -0.5 4,671,756 + -0.6 4,671,770 + -0.4 4,671,797 + -0.3 4,671,803 + +0.5 4,671,804 - -0.1 4,671,808 + -0.4 4,671,809 - -0.4 4,671,809 - +0.7 4,671,809 - -0.4 4,671,809 - -0.4 4,671,814 + -0.2 4,671,826 - -0.3 4,671,826 - -0.1 4,671,831 + +0.2 4,671,888 + CA264_20250 0.17 -1.4 4,671,963 + CA264_20250 0.34 -0.5 4,671,963 + CA264_20250 0.34 -0.4 4,671,963 + CA264_20250 0.34 +1.2 4,671,964 - CA264_20250 0.34 +0.3 4,672,019 - CA264_20250 0.46 -0.1 4,672,022 - CA264_20250 0.47 -0.1 4,672,039 + CA264_20250 0.51 -0.2 4,672,039 + CA264_20250 0.51 -1.2 4,672,040 - CA264_20250 0.51 -0.4 4,672,104 + CA264_20250 0.66 +0.0 4,672,105 - CA264_20250 0.66 -0.5 4,672,105 - CA264_20250 0.66 -1.0 4,672,159 - CA264_20250 0.78 -2.3 4,672,167 + CA264_20250 0.80 -0.3 4,672,167 + CA264_20250 0.80 -0.4 4,672,191 - CA264_20250 0.85 +1.0 4,672,243 - -0.1 4,672,253 + -0.7 4,672,282 - +0.8 4,672,312 + +2.0 4,672,312 + -0.2 4,672,313 - -1.1 4,672,313 - -0.2 4,672,313 - +1.6 4,672,313 - -0.5 4,672,316 + -0.4 4,672,317 - +1.6 4,672,321 + -0.0 4,672,335 + +0.1 4,672,457 - CA264_20255 0.25 -0.2 4,672,457 - CA264_20255 0.25 -0.0 4,672,481 + CA264_20255 0.30 -0.8 4,672,482 - CA264_20255 0.30 -0.3 4,672,509 + CA264_20255 0.35 -0.3 4,672,510 - CA264_20255 0.35 -1.0 4,672,591 + CA264_20255 0.50 -1.0 4,672,628 + CA264_20255 0.57 -0.6 4,672,658 - CA264_20255 0.63 +1.0 4,672,729 + CA264_20255 0.76 +0.1 4,672,730 - CA264_20255 0.76 -0.5 4,672,730 - CA264_20255 0.76 -0.5 4,672,860 - -0.5 4,672,976 - CA264_20260 0.13 +0.1 4,672,991 - CA264_20260 0.14 -0.6 4,673,026 + CA264_20260 0.18 -0.4 4,673,026 + CA264_20260 0.18 +0.1 4,673,038 + CA264_20260 0.19 -0.1 4,673,039 - CA264_20260 0.19 -0.3 4,673,113 + CA264_20260 0.27 -0.1 4,673,211 + CA264_20260 0.37 -0.5 4,673,212 - CA264_20260 0.37 -1.4 4,673,212 - CA264_20260 0.37 -0.3 4,673,212 - CA264_20260 0.37 -0.1 4,673,217 + CA264_20260 0.38 -0.7 4,673,376 + CA264_20260 0.54 -0.2 4,673,376 + CA264_20260 0.54 +0.9 4,673,380 - CA264_20260 0.55 -0.2 4,673,461 - CA264_20260 0.63 -0.2 4,673,559 + CA264_20260 0.73 +0.3 4,673,560 - CA264_20260 0.74 -0.9 4,673,713 + CA264_20260 0.90 -0.3 4,673,763 + +0.2 4,673,769 - +1.1 4,673,824 - -0.4
Or see this region's nucleotide sequence