Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19225

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19215 and CA264_19220 are separated by 27 nucleotidesCA264_19220 and CA264_19225 are separated by 6 nucleotidesCA264_19225 and CA264_19230 overlap by 4 nucleotidesCA264_19230 and CA264_19235 are separated by 141 nucleotides CA264_19215: CA264_19215 - RNA polymerase subunit sigma, at 4,464,406 to 4,464,999 _19215 CA264_19220: CA264_19220 - hypothetical protein, at 4,465,027 to 4,465,308 _19220 CA264_19225: CA264_19225 - guanylate kinase, at 4,465,315 to 4,465,899 _19225 CA264_19230: CA264_19230 - nicotinate-nicotinamide nucleotide adenylyltransferase, at 4,465,896 to 4,466,468 _19230 CA264_19235: CA264_19235 - ribosome-recycling factor, at 4,466,610 to 4,467,173 _19235 Position (kb) 4465 4466Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4464.338 kb on - strandat 4464.347 kb on - strandat 4464.360 kb on - strandat 4464.398 kb on + strandat 4464.399 kb on - strandat 4464.433 kb on - strandat 4464.436 kb on - strandat 4464.494 kb on - strand, within CA264_19215at 4464.505 kb on + strand, within CA264_19215at 4464.519 kb on - strand, within CA264_19215at 4464.545 kb on + strand, within CA264_19215at 4464.556 kb on + strand, within CA264_19215at 4464.556 kb on + strand, within CA264_19215at 4464.557 kb on - strand, within CA264_19215at 4464.569 kb on - strand, within CA264_19215at 4464.600 kb on + strand, within CA264_19215at 4464.710 kb on - strand, within CA264_19215at 4464.710 kb on - strand, within CA264_19215at 4464.834 kb on + strand, within CA264_19215at 4464.846 kb on + strand, within CA264_19215at 4464.908 kb on + strand, within CA264_19215at 4464.918 kb on - strand, within CA264_19215at 4464.975 kb on + strandat 4464.976 kb on - strandat 4464.991 kb on - strandat 4465.023 kb on + strandat 4465.049 kb on + strandat 4465.097 kb on + strand, within CA264_19220at 4465.109 kb on + strand, within CA264_19220at 4465.110 kb on - strand, within CA264_19220at 4465.167 kb on + strand, within CA264_19220at 4465.264 kb on - strand, within CA264_19220at 4465.305 kb on - strandat 4466.493 kb on + strandat 4466.515 kb on + strandat 4466.516 kb on - strandat 4466.516 kb on - strandat 4466.521 kb on - strandat 4466.579 kb on + strandat 4466.579 kb on + strandat 4466.603 kb on + strandat 4466.611 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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4,464,338 - -0.5
4,464,347 - -0.7
4,464,360 - -0.6
4,464,398 + +0.7
4,464,399 - -1.6
4,464,433 - -0.8
4,464,436 - -0.6
4,464,494 - CA264_19215 0.15 -1.0
4,464,505 + CA264_19215 0.17 +0.2
4,464,519 - CA264_19215 0.19 -0.5
4,464,545 + CA264_19215 0.23 -2.3
4,464,556 + CA264_19215 0.25 +0.6
4,464,556 + CA264_19215 0.25 -1.4
4,464,557 - CA264_19215 0.25 -1.7
4,464,569 - CA264_19215 0.27 -0.0
4,464,600 + CA264_19215 0.33 +0.4
4,464,710 - CA264_19215 0.51 -0.7
4,464,710 - CA264_19215 0.51 -2.9
4,464,834 + CA264_19215 0.72 -0.8
4,464,846 + CA264_19215 0.74 -1.2
4,464,908 + CA264_19215 0.85 -2.0
4,464,918 - CA264_19215 0.86 +2.5
4,464,975 + -0.6
4,464,976 - -0.1
4,464,991 - -0.3
4,465,023 + -0.4
4,465,049 + -1.2
4,465,097 + CA264_19220 0.25 -0.4
4,465,109 + CA264_19220 0.29 -1.4
4,465,110 - CA264_19220 0.29 -0.0
4,465,167 + CA264_19220 0.50 +0.2
4,465,264 - CA264_19220 0.84 -2.5
4,465,305 - +0.3
4,466,493 + -0.9
4,466,515 + +2.2
4,466,516 - -0.4
4,466,516 - +0.3
4,466,521 - +0.3
4,466,579 + -0.6
4,466,579 + -0.8
4,466,603 + -1.5
4,466,611 + +0.1

Or see this region's nucleotide sequence