Experiment: m.b. Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16490 and CA264_16495 are separated by 299 nucleotides CA264_16495 and CA264_16500 are separated by 92 nucleotides CA264_16500 and CA264_16505 are separated by 6 nucleotides
CA264_16490: CA264_16490 - glucose-1-phosphate thymidylyltransferase, at 3,833,150 to 3,834,151
_16490
CA264_16495: CA264_16495 - LemA family protein, at 3,834,451 to 3,835,029
_16495
CA264_16500: CA264_16500 - hypothetical protein, at 3,835,122 to 3,835,559
_16500
CA264_16505: CA264_16505 - methanol dehydrogenase, at 3,835,566 to 3,836,339
_16505
Position (kb)
3834
3835
3836 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3833.787 kb on + strand, within CA264_16490 at 3833.788 kb on - strand, within CA264_16490 at 3833.789 kb on - strand, within CA264_16490 at 3833.800 kb on + strand, within CA264_16490 at 3833.804 kb on - strand, within CA264_16490 at 3833.817 kb on - strand, within CA264_16490 at 3833.842 kb on + strand, within CA264_16490 at 3833.855 kb on - strand, within CA264_16490 at 3833.855 kb on - strand, within CA264_16490 at 3833.868 kb on + strand, within CA264_16490 at 3833.869 kb on - strand, within CA264_16490 at 3833.940 kb on - strand, within CA264_16490 at 3833.940 kb on - strand, within CA264_16490 at 3833.965 kb on - strand, within CA264_16490 at 3833.998 kb on + strand, within CA264_16490 at 3833.999 kb on - strand, within CA264_16490 at 3834.016 kb on + strand, within CA264_16490 at 3834.053 kb on + strand at 3834.053 kb on + strand at 3834.053 kb on + strand at 3834.056 kb on - strand at 3834.059 kb on - strand at 3834.059 kb on - strand at 3834.085 kb on + strand at 3834.138 kb on - strand at 3834.138 kb on - strand at 3834.139 kb on + strand at 3834.140 kb on - strand at 3834.140 kb on - strand at 3834.152 kb on - strand at 3834.158 kb on + strand at 3834.190 kb on + strand at 3834.233 kb on + strand at 3834.391 kb on + strand at 3834.397 kb on + strand at 3834.407 kb on + strand at 3834.407 kb on + strand at 3834.407 kb on + strand at 3834.424 kb on + strand at 3834.425 kb on - strand at 3834.426 kb on + strand at 3834.427 kb on - strand at 3834.427 kb on - strand at 3834.436 kb on + strand at 3834.470 kb on - strand at 3834.477 kb on - strand at 3834.486 kb on - strand at 3834.664 kb on - strand, within CA264_16495 at 3834.666 kb on - strand, within CA264_16495 at 3834.666 kb on - strand, within CA264_16495 at 3834.910 kb on + strand, within CA264_16495 at 3835.050 kb on - strand at 3835.083 kb on - strand at 3835.091 kb on + strand at 3835.117 kb on - strand at 3835.244 kb on - strand, within CA264_16500 at 3835.465 kb on + strand, within CA264_16500 at 3835.557 kb on + strand at 3835.557 kb on + strand at 3835.565 kb on + strand at 3835.566 kb on - strand at 3835.584 kb on - strand at 3835.669 kb on - strand, within CA264_16505 at 3835.842 kb on + strand, within CA264_16505 at 3835.843 kb on - strand, within CA264_16505 at 3835.920 kb on + strand, within CA264_16505 at 3835.920 kb on + strand, within CA264_16505 at 3835.920 kb on + strand, within CA264_16505 at 3835.921 kb on - strand, within CA264_16505 at 3835.921 kb on - strand, within CA264_16505 at 3835.921 kb on - strand, within CA264_16505 at 3835.924 kb on + strand, within CA264_16505 at 3835.924 kb on + strand, within CA264_16505 at 3835.963 kb on + strand, within CA264_16505 at 3836.019 kb on - strand, within CA264_16505
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml remove 3,833,787 + CA264_16490 0.64 -0.7 3,833,788 - CA264_16490 0.64 -0.3 3,833,789 - CA264_16490 0.64 +1.2 3,833,800 + CA264_16490 0.65 -0.1 3,833,804 - CA264_16490 0.65 +0.0 3,833,817 - CA264_16490 0.67 +0.3 3,833,842 + CA264_16490 0.69 +0.5 3,833,855 - CA264_16490 0.70 +2.2 3,833,855 - CA264_16490 0.70 +0.4 3,833,868 + CA264_16490 0.72 -0.3 3,833,869 - CA264_16490 0.72 -1.3 3,833,940 - CA264_16490 0.79 +0.8 3,833,940 - CA264_16490 0.79 +0.4 3,833,965 - CA264_16490 0.81 +0.3 3,833,998 + CA264_16490 0.85 -0.5 3,833,999 - CA264_16490 0.85 -1.2 3,834,016 + CA264_16490 0.86 -0.4 3,834,053 + +0.6 3,834,053 + +0.2 3,834,053 + -0.6 3,834,056 - +0.4 3,834,059 - -1.0 3,834,059 - -0.6 3,834,085 + +0.1 3,834,138 - +0.4 3,834,138 - -0.6 3,834,139 + +0.1 3,834,140 - +0.3 3,834,140 - +0.7 3,834,152 - +0.2 3,834,158 + +0.5 3,834,190 + -0.2 3,834,233 + -0.1 3,834,391 + -0.5 3,834,397 + +0.2 3,834,407 + -0.1 3,834,407 + +0.1 3,834,407 + -0.5 3,834,424 + +0.1 3,834,425 - -0.8 3,834,426 + -0.2 3,834,427 - +1.7 3,834,427 - +0.7 3,834,436 + -1.8 3,834,470 - -1.5 3,834,477 - -1.4 3,834,486 - -0.6 3,834,664 - CA264_16495 0.37 -1.7 3,834,666 - CA264_16495 0.37 -1.9 3,834,666 - CA264_16495 0.37 -2.4 3,834,910 + CA264_16495 0.79 -1.1 3,835,050 - -2.0 3,835,083 - -1.1 3,835,091 + -0.8 3,835,117 - -1.9 3,835,244 - CA264_16500 0.28 -0.7 3,835,465 + CA264_16500 0.78 -0.6 3,835,557 + -1.2 3,835,557 + -1.3 3,835,565 + +0.2 3,835,566 - +0.7 3,835,584 - -0.6 3,835,669 - CA264_16505 0.13 +2.6 3,835,842 + CA264_16505 0.36 -0.2 3,835,843 - CA264_16505 0.36 +0.2 3,835,920 + CA264_16505 0.46 +0.3 3,835,920 + CA264_16505 0.46 -0.2 3,835,920 + CA264_16505 0.46 +1.6 3,835,921 - CA264_16505 0.46 -0.3 3,835,921 - CA264_16505 0.46 -0.7 3,835,921 - CA264_16505 0.46 -2.1 3,835,924 + CA264_16505 0.46 +0.7 3,835,924 + CA264_16505 0.46 -0.3 3,835,963 + CA264_16505 0.51 -0.3 3,836,019 - CA264_16505 0.59 -0.4
Or see this region's nucleotide sequence