Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15305

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15300 and CA264_15305 are separated by 29 nucleotidesCA264_15305 and CA264_15310 are separated by 29 nucleotides CA264_15300: CA264_15300 - hypothetical protein, at 3,580,244 to 3,581,275 _15300 CA264_15305: CA264_15305 - hypothetical protein, at 3,581,305 to 3,582,339 _15305 CA264_15310: CA264_15310 - hypothetical protein, at 3,582,369 to 3,583,385 _15310 Position (kb) 3581 3582 3583Strain fitness (log2 ratio) -2 -1 0 1 2at 3580.306 kb on + strandat 3580.328 kb on + strandat 3580.328 kb on + strandat 3580.328 kb on + strandat 3580.329 kb on - strandat 3580.329 kb on - strandat 3580.329 kb on - strandat 3580.329 kb on - strandat 3580.347 kb on - strandat 3580.413 kb on - strand, within CA264_15300at 3580.423 kb on + strand, within CA264_15300at 3580.424 kb on - strand, within CA264_15300at 3580.424 kb on - strand, within CA264_15300at 3580.520 kb on - strand, within CA264_15300at 3580.541 kb on + strand, within CA264_15300at 3580.561 kb on + strand, within CA264_15300at 3580.561 kb on + strand, within CA264_15300at 3580.562 kb on - strand, within CA264_15300at 3580.563 kb on + strand, within CA264_15300at 3580.640 kb on - strand, within CA264_15300at 3580.743 kb on + strand, within CA264_15300at 3580.743 kb on + strand, within CA264_15300at 3580.743 kb on + strand, within CA264_15300at 3580.744 kb on - strand, within CA264_15300at 3580.744 kb on - strand, within CA264_15300at 3580.798 kb on - strand, within CA264_15300at 3580.802 kb on + strand, within CA264_15300at 3580.840 kb on + strand, within CA264_15300at 3580.840 kb on + strand, within CA264_15300at 3580.842 kb on + strand, within CA264_15300at 3580.842 kb on + strand, within CA264_15300at 3580.842 kb on + strand, within CA264_15300at 3580.843 kb on - strand, within CA264_15300at 3580.859 kb on + strand, within CA264_15300at 3580.860 kb on - strand, within CA264_15300at 3580.872 kb on - strand, within CA264_15300at 3580.883 kb on + strand, within CA264_15300at 3580.884 kb on - strand, within CA264_15300at 3580.892 kb on + strand, within CA264_15300at 3580.892 kb on + strand, within CA264_15300at 3580.892 kb on + strand, within CA264_15300at 3580.894 kb on + strand, within CA264_15300at 3580.911 kb on - strand, within CA264_15300at 3580.916 kb on - strand, within CA264_15300at 3580.916 kb on - strand, within CA264_15300at 3580.925 kb on - strand, within CA264_15300at 3580.932 kb on + strand, within CA264_15300at 3580.934 kb on + strand, within CA264_15300at 3581.257 kb on + strandat 3581.293 kb on + strandat 3581.294 kb on - strandat 3581.306 kb on + strandat 3581.307 kb on - strandat 3581.384 kb on + strandat 3581.389 kb on + strandat 3581.389 kb on + strandat 3581.390 kb on - strandat 3581.390 kb on - strandat 3581.390 kb on - strandat 3581.406 kb on + strandat 3581.406 kb on + strandat 3581.410 kb on + strand, within CA264_15305at 3581.411 kb on - strand, within CA264_15305at 3581.421 kb on + strand, within CA264_15305at 3581.421 kb on + strand, within CA264_15305at 3581.421 kb on + strand, within CA264_15305at 3581.422 kb on - strand, within CA264_15305at 3581.424 kb on + strand, within CA264_15305at 3581.473 kb on + strand, within CA264_15305at 3581.473 kb on + strand, within CA264_15305at 3581.478 kb on + strand, within CA264_15305at 3581.479 kb on - strand, within CA264_15305at 3581.481 kb on - strand, within CA264_15305at 3581.568 kb on - strand, within CA264_15305at 3581.583 kb on + strand, within CA264_15305at 3581.583 kb on + strand, within CA264_15305at 3581.584 kb on - strand, within CA264_15305at 3581.586 kb on + strand, within CA264_15305at 3581.587 kb on - strand, within CA264_15305at 3581.624 kb on + strand, within CA264_15305at 3581.625 kb on - strand, within CA264_15305at 3581.625 kb on - strand, within CA264_15305at 3581.658 kb on + strand, within CA264_15305at 3581.662 kb on + strand, within CA264_15305at 3581.700 kb on + strand, within CA264_15305at 3581.706 kb on + strand, within CA264_15305at 3581.707 kb on - strand, within CA264_15305at 3582.167 kb on + strand, within CA264_15305at 3582.192 kb on - strand, within CA264_15305at 3582.207 kb on - strand, within CA264_15305at 3582.211 kb on + strand, within CA264_15305at 3582.212 kb on - strand, within CA264_15305at 3582.307 kb on + strandat 3582.308 kb on - strandat 3582.322 kb on - strandat 3582.323 kb on + strandat 3582.323 kb on + strandat 3582.323 kb on + strandat 3582.340 kb on - strandat 3582.340 kb on - strandat 3582.353 kb on - strandat 3582.353 kb on - strandat 3582.360 kb on - strandat 3582.452 kb on + strandat 3582.452 kb on + strandat 3582.452 kb on + strandat 3582.453 kb on - strandat 3582.453 kb on - strandat 3582.537 kb on + strand, within CA264_15310at 3582.544 kb on + strand, within CA264_15310at 3582.631 kb on + strand, within CA264_15310at 3582.631 kb on + strand, within CA264_15310at 3582.658 kb on + strand, within CA264_15310at 3582.659 kb on - strand, within CA264_15310at 3582.666 kb on + strand, within CA264_15310at 3582.673 kb on + strand, within CA264_15310at 3582.674 kb on - strand, within CA264_15310at 3582.678 kb on - strand, within CA264_15310at 3582.678 kb on - strand, within CA264_15310at 3582.685 kb on - strand, within CA264_15310at 3582.688 kb on + strand, within CA264_15310at 3582.843 kb on - strand, within CA264_15310at 3582.843 kb on - strand, within CA264_15310at 3583.184 kb on - strand, within CA264_15310at 3583.184 kb on - strand, within CA264_15310

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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3,580,306 + -0.1
3,580,328 + +0.6
3,580,328 + +0.1
3,580,328 + -1.2
3,580,329 - -0.6
3,580,329 - +0.8
3,580,329 - -0.8
3,580,329 - +0.6
3,580,347 - +0.6
3,580,413 - CA264_15300 0.16 +0.6
3,580,423 + CA264_15300 0.17 -0.2
3,580,424 - CA264_15300 0.17 -0.4
3,580,424 - CA264_15300 0.17 +0.3
3,580,520 - CA264_15300 0.27 -0.6
3,580,541 + CA264_15300 0.29 -0.7
3,580,561 + CA264_15300 0.31 -0.9
3,580,561 + CA264_15300 0.31 +0.5
3,580,562 - CA264_15300 0.31 -0.1
3,580,563 + CA264_15300 0.31 +0.3
3,580,640 - CA264_15300 0.38 -0.2
3,580,743 + CA264_15300 0.48 +0.3
3,580,743 + CA264_15300 0.48 +0.4
3,580,743 + CA264_15300 0.48 -0.4
3,580,744 - CA264_15300 0.48 -0.1
3,580,744 - CA264_15300 0.48 +0.1
3,580,798 - CA264_15300 0.54 -0.9
3,580,802 + CA264_15300 0.54 +0.1
3,580,840 + CA264_15300 0.58 +0.2
3,580,840 + CA264_15300 0.58 +0.2
3,580,842 + CA264_15300 0.58 -0.5
3,580,842 + CA264_15300 0.58 -0.3
3,580,842 + CA264_15300 0.58 +0.0
3,580,843 - CA264_15300 0.58 -0.5
3,580,859 + CA264_15300 0.60 +0.5
3,580,860 - CA264_15300 0.60 +0.8
3,580,872 - CA264_15300 0.61 -0.5
3,580,883 + CA264_15300 0.62 +0.6
3,580,884 - CA264_15300 0.62 -1.1
3,580,892 + CA264_15300 0.63 -1.2
3,580,892 + CA264_15300 0.63 -1.9
3,580,892 + CA264_15300 0.63 +0.2
3,580,894 + CA264_15300 0.63 +0.2
3,580,911 - CA264_15300 0.65 +0.8
3,580,916 - CA264_15300 0.65 -1.3
3,580,916 - CA264_15300 0.65 +0.1
3,580,925 - CA264_15300 0.66 -0.4
3,580,932 + CA264_15300 0.67 +2.3
3,580,934 + CA264_15300 0.67 -0.8
3,581,257 + -0.3
3,581,293 + -0.1
3,581,294 - -0.9
3,581,306 + -0.5
3,581,307 - -0.4
3,581,384 + -0.4
3,581,389 + -0.3
3,581,389 + -0.1
3,581,390 - -0.0
3,581,390 - +0.4
3,581,390 - +0.1
3,581,406 + -1.0
3,581,406 + +0.1
3,581,410 + CA264_15305 0.10 -0.7
3,581,411 - CA264_15305 0.10 -0.1
3,581,421 + CA264_15305 0.11 -0.3
3,581,421 + CA264_15305 0.11 +1.2
3,581,421 + CA264_15305 0.11 +0.9
3,581,422 - CA264_15305 0.11 +0.5
3,581,424 + CA264_15305 0.11 -0.4
3,581,473 + CA264_15305 0.16 +0.4
3,581,473 + CA264_15305 0.16 -1.1
3,581,478 + CA264_15305 0.17 +0.8
3,581,479 - CA264_15305 0.17 -0.1
3,581,481 - CA264_15305 0.17 -0.6
3,581,568 - CA264_15305 0.25 -1.9
3,581,583 + CA264_15305 0.27 -0.5
3,581,583 + CA264_15305 0.27 +1.4
3,581,584 - CA264_15305 0.27 +0.6
3,581,586 + CA264_15305 0.27 +1.6
3,581,587 - CA264_15305 0.27 +0.1
3,581,624 + CA264_15305 0.31 +0.1
3,581,625 - CA264_15305 0.31 -1.8
3,581,625 - CA264_15305 0.31 -0.1
3,581,658 + CA264_15305 0.34 +0.7
3,581,662 + CA264_15305 0.34 +0.9
3,581,700 + CA264_15305 0.38 -0.0
3,581,706 + CA264_15305 0.39 +0.4
3,581,707 - CA264_15305 0.39 -0.8
3,582,167 + CA264_15305 0.83 -0.6
3,582,192 - CA264_15305 0.86 +0.9
3,582,207 - CA264_15305 0.87 +1.1
3,582,211 + CA264_15305 0.88 -0.3
3,582,212 - CA264_15305 0.88 -0.3
3,582,307 + -0.5
3,582,308 - -2.4
3,582,322 - +1.0
3,582,323 + -0.3
3,582,323 + +0.2
3,582,323 + +0.8
3,582,340 - -1.0
3,582,340 - -0.4
3,582,353 - +0.1
3,582,353 - -0.3
3,582,360 - +0.3
3,582,452 + -0.9
3,582,452 + +0.1
3,582,452 + -0.2
3,582,453 - +0.6
3,582,453 - -0.1
3,582,537 + CA264_15310 0.17 +0.0
3,582,544 + CA264_15310 0.17 -0.0
3,582,631 + CA264_15310 0.26 +0.4
3,582,631 + CA264_15310 0.26 -0.1
3,582,658 + CA264_15310 0.28 -0.2
3,582,659 - CA264_15310 0.29 +0.5
3,582,666 + CA264_15310 0.29 +0.1
3,582,673 + CA264_15310 0.30 +1.3
3,582,674 - CA264_15310 0.30 -0.4
3,582,678 - CA264_15310 0.30 +0.2
3,582,678 - CA264_15310 0.30 -0.8
3,582,685 - CA264_15310 0.31 +0.2
3,582,688 + CA264_15310 0.31 +1.6
3,582,843 - CA264_15310 0.47 -2.1
3,582,843 - CA264_15310 0.47 -0.1
3,583,184 - CA264_15310 0.80 -0.9
3,583,184 - CA264_15310 0.80 -0.4

Or see this region's nucleotide sequence