Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13835

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13820 and CA264_13825 are separated by 90 nucleotidesCA264_13825 and CA264_13830 are separated by 106 nucleotidesCA264_13830 and CA264_13835 are separated by 71 nucleotidesCA264_13835 and CA264_13840 are separated by 154 nucleotides CA264_13820: CA264_13820 - protease, at 3,231,826 to 3,232,440 _13820 CA264_13825: CA264_13825 - hypothetical protein, at 3,232,531 to 3,232,764 _13825 CA264_13830: CA264_13830 - hypothetical protein, at 3,232,871 to 3,233,071 _13830 CA264_13835: CA264_13835 - hypothetical protein, at 3,233,143 to 3,233,865 _13835 CA264_13840: CA264_13840 - metallophosphatase, at 3,234,020 to 3,235,252 _13840 Position (kb) 3233 3234Strain fitness (log2 ratio) -2 -1 0 1 2at 3232.161 kb on + strand, within CA264_13820at 3232.161 kb on + strand, within CA264_13820at 3232.161 kb on + strand, within CA264_13820at 3232.161 kb on + strand, within CA264_13820at 3232.162 kb on - strand, within CA264_13820at 3232.244 kb on - strand, within CA264_13820at 3232.289 kb on + strand, within CA264_13820at 3232.332 kb on + strand, within CA264_13820at 3232.333 kb on - strand, within CA264_13820at 3232.512 kb on + strandat 3232.518 kb on - strandat 3232.518 kb on - strandat 3232.639 kb on + strand, within CA264_13825at 3232.762 kb on + strandat 3232.762 kb on + strandat 3232.762 kb on + strandat 3232.807 kb on + strandat 3232.807 kb on + strandat 3232.807 kb on + strandat 3232.808 kb on - strandat 3232.808 kb on - strandat 3232.808 kb on - strandat 3232.808 kb on - strandat 3232.812 kb on - strandat 3232.812 kb on - strandat 3232.812 kb on - strandat 3232.813 kb on + strandat 3232.814 kb on - strandat 3232.838 kb on - strandat 3232.838 kb on - strandat 3232.850 kb on + strandat 3232.850 kb on + strandat 3232.857 kb on - strandat 3232.857 kb on - strandat 3232.860 kb on + strandat 3232.860 kb on + strandat 3232.861 kb on - strandat 3232.862 kb on + strandat 3232.862 kb on + strandat 3232.862 kb on + strandat 3232.863 kb on - strandat 3232.863 kb on - strandat 3232.863 kb on - strandat 3232.866 kb on + strandat 3232.895 kb on - strand, within CA264_13830at 3232.898 kb on - strand, within CA264_13830at 3233.011 kb on + strand, within CA264_13830at 3233.017 kb on - strand, within CA264_13830at 3233.017 kb on - strand, within CA264_13830at 3233.171 kb on + strandat 3233.172 kb on - strandat 3233.309 kb on - strand, within CA264_13835at 3233.309 kb on - strand, within CA264_13835at 3233.309 kb on - strand, within CA264_13835at 3233.311 kb on - strand, within CA264_13835at 3233.311 kb on - strand, within CA264_13835at 3233.313 kb on + strand, within CA264_13835at 3233.313 kb on + strand, within CA264_13835at 3233.434 kb on + strand, within CA264_13835at 3233.435 kb on - strand, within CA264_13835at 3233.480 kb on - strand, within CA264_13835at 3233.484 kb on - strand, within CA264_13835at 3233.484 kb on - strand, within CA264_13835at 3233.489 kb on + strand, within CA264_13835at 3233.489 kb on + strand, within CA264_13835at 3233.490 kb on - strand, within CA264_13835at 3233.490 kb on - strand, within CA264_13835at 3233.490 kb on - strand, within CA264_13835at 3233.490 kb on - strand, within CA264_13835at 3233.493 kb on + strand, within CA264_13835at 3233.494 kb on - strand, within CA264_13835at 3233.541 kb on + strand, within CA264_13835at 3233.629 kb on + strand, within CA264_13835at 3233.630 kb on - strand, within CA264_13835at 3233.812 kb on - strandat 3233.924 kb on + strandat 3234.020 kb on - strandat 3234.150 kb on - strand, within CA264_13840at 3234.234 kb on - strand, within CA264_13840at 3234.269 kb on - strand, within CA264_13840at 3234.428 kb on - strand, within CA264_13840at 3234.428 kb on - strand, within CA264_13840at 3234.429 kb on + strand, within CA264_13840at 3234.429 kb on + strand, within CA264_13840at 3234.429 kb on + strand, within CA264_13840at 3234.429 kb on + strand, within CA264_13840at 3234.430 kb on - strand, within CA264_13840at 3234.431 kb on + strand, within CA264_13840at 3234.431 kb on + strand, within CA264_13840at 3234.432 kb on - strand, within CA264_13840at 3234.432 kb on - strand, within CA264_13840at 3234.517 kb on + strand, within CA264_13840at 3234.595 kb on + strand, within CA264_13840at 3234.711 kb on - strand, within CA264_13840at 3234.743 kb on + strand, within CA264_13840at 3234.744 kb on - strand, within CA264_13840at 3234.797 kb on - strand, within CA264_13840

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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3,232,161 + CA264_13820 0.54 -1.3
3,232,161 + CA264_13820 0.54 +0.3
3,232,161 + CA264_13820 0.54 +0.8
3,232,161 + CA264_13820 0.54 +0.4
3,232,162 - CA264_13820 0.55 -0.7
3,232,244 - CA264_13820 0.68 +1.9
3,232,289 + CA264_13820 0.75 -0.2
3,232,332 + CA264_13820 0.82 -0.2
3,232,333 - CA264_13820 0.82 +0.4
3,232,512 + -0.2
3,232,518 - -0.3
3,232,518 - -0.3
3,232,639 + CA264_13825 0.46 -0.1
3,232,762 + -0.4
3,232,762 + +0.2
3,232,762 + -0.0
3,232,807 + +1.4
3,232,807 + -0.3
3,232,807 + -1.2
3,232,808 - +1.1
3,232,808 - -0.3
3,232,808 - -0.5
3,232,808 - -0.1
3,232,812 - +0.2
3,232,812 - -0.3
3,232,812 - -0.1
3,232,813 + -0.5
3,232,814 - -0.1
3,232,838 - -1.5
3,232,838 - -0.6
3,232,850 + -0.6
3,232,850 + -1.2
3,232,857 - +0.5
3,232,857 - -0.0
3,232,860 + -0.3
3,232,860 + -0.5
3,232,861 - -0.4
3,232,862 + -0.1
3,232,862 + -0.1
3,232,862 + +0.2
3,232,863 - +0.1
3,232,863 - -0.0
3,232,863 - -1.3
3,232,866 + -0.5
3,232,895 - CA264_13830 0.12 +0.6
3,232,898 - CA264_13830 0.13 -1.0
3,233,011 + CA264_13830 0.70 -0.3
3,233,017 - CA264_13830 0.73 +0.3
3,233,017 - CA264_13830 0.73 +1.2
3,233,171 + +0.8
3,233,172 - -0.1
3,233,309 - CA264_13835 0.23 +0.4
3,233,309 - CA264_13835 0.23 -1.6
3,233,309 - CA264_13835 0.23 -1.3
3,233,311 - CA264_13835 0.23 -0.1
3,233,311 - CA264_13835 0.23 -2.2
3,233,313 + CA264_13835 0.24 -0.4
3,233,313 + CA264_13835 0.24 +0.3
3,233,434 + CA264_13835 0.40 +0.5
3,233,435 - CA264_13835 0.40 -0.7
3,233,480 - CA264_13835 0.47 -1.2
3,233,484 - CA264_13835 0.47 -0.1
3,233,484 - CA264_13835 0.47 -0.3
3,233,489 + CA264_13835 0.48 -0.5
3,233,489 + CA264_13835 0.48 -0.8
3,233,490 - CA264_13835 0.48 -0.1
3,233,490 - CA264_13835 0.48 -0.8
3,233,490 - CA264_13835 0.48 -0.2
3,233,490 - CA264_13835 0.48 -0.2
3,233,493 + CA264_13835 0.48 +0.5
3,233,494 - CA264_13835 0.49 -1.0
3,233,541 + CA264_13835 0.55 -0.8
3,233,629 + CA264_13835 0.67 -0.5
3,233,630 - CA264_13835 0.67 -0.9
3,233,812 - -0.7
3,233,924 + -0.6
3,234,020 - +0.1
3,234,150 - CA264_13840 0.11 +1.0
3,234,234 - CA264_13840 0.17 -1.3
3,234,269 - CA264_13840 0.20 -0.7
3,234,428 - CA264_13840 0.33 -0.6
3,234,428 - CA264_13840 0.33 -0.3
3,234,429 + CA264_13840 0.33 +1.1
3,234,429 + CA264_13840 0.33 +0.5
3,234,429 + CA264_13840 0.33 -0.1
3,234,429 + CA264_13840 0.33 +1.2
3,234,430 - CA264_13840 0.33 -1.0
3,234,431 + CA264_13840 0.33 -0.2
3,234,431 + CA264_13840 0.33 +0.6
3,234,432 - CA264_13840 0.33 -0.4
3,234,432 - CA264_13840 0.33 -0.4
3,234,517 + CA264_13840 0.40 +1.9
3,234,595 + CA264_13840 0.47 -0.3
3,234,711 - CA264_13840 0.56 -0.6
3,234,743 + CA264_13840 0.59 -1.6
3,234,744 - CA264_13840 0.59 +0.2
3,234,797 - CA264_13840 0.63 -0.0

Or see this region's nucleotide sequence