Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13555

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13550 and CA264_13555 are separated by 197 nucleotidesCA264_13555 and CA264_13560 are separated by 177 nucleotidesCA264_13560 and CA264_13565 are separated by 157 nucleotides CA264_13550: CA264_13550 - hypothetical protein, at 3,163,147 to 3,164,622 _13550 CA264_13555: CA264_13555 - hypothetical protein, at 3,164,820 to 3,165,110 _13555 CA264_13560: CA264_13560 - membrane protein insertion efficiency factor YidD, at 3,165,288 to 3,165,509 _13560 CA264_13565: CA264_13565 - serine protease, at 3,165,667 to 3,167,916 _13565 Position (kb) 3164 3165 3166Strain fitness (log2 ratio) -2 -1 0 1 2at 3163.828 kb on + strand, within CA264_13550at 3163.829 kb on - strand, within CA264_13550at 3163.840 kb on + strand, within CA264_13550at 3163.923 kb on + strand, within CA264_13550at 3163.924 kb on - strand, within CA264_13550at 3164.056 kb on + strand, within CA264_13550at 3164.056 kb on + strand, within CA264_13550at 3164.060 kb on + strand, within CA264_13550at 3164.061 kb on - strand, within CA264_13550at 3164.061 kb on - strand, within CA264_13550at 3164.061 kb on - strand, within CA264_13550at 3164.119 kb on + strand, within CA264_13550at 3164.125 kb on + strand, within CA264_13550at 3164.126 kb on - strand, within CA264_13550at 3164.141 kb on + strand, within CA264_13550at 3164.142 kb on - strand, within CA264_13550at 3164.216 kb on + strand, within CA264_13550at 3164.345 kb on + strand, within CA264_13550at 3164.345 kb on + strand, within CA264_13550at 3164.519 kb on + strandat 3164.520 kb on - strandat 3164.544 kb on + strandat 3164.545 kb on - strandat 3164.545 kb on - strandat 3164.586 kb on - strandat 3164.586 kb on - strandat 3164.622 kb on + strandat 3164.623 kb on - strandat 3164.623 kb on - strandat 3164.625 kb on - strandat 3164.638 kb on - strandat 3164.638 kb on - strandat 3164.640 kb on + strandat 3164.643 kb on - strandat 3164.643 kb on - strandat 3164.644 kb on + strandat 3164.656 kb on + strandat 3164.656 kb on + strandat 3164.664 kb on + strandat 3164.724 kb on - strandat 3164.727 kb on + strandat 3164.822 kb on - strandat 3164.823 kb on + strandat 3164.944 kb on + strand, within CA264_13555at 3164.948 kb on + strand, within CA264_13555at 3164.948 kb on + strand, within CA264_13555at 3164.956 kb on + strand, within CA264_13555at 3165.024 kb on + strand, within CA264_13555at 3165.024 kb on + strand, within CA264_13555at 3165.105 kb on + strandat 3165.124 kb on + strandat 3165.155 kb on - strandat 3165.164 kb on - strandat 3165.168 kb on - strandat 3165.191 kb on + strandat 3165.191 kb on + strandat 3165.192 kb on - strandat 3165.197 kb on - strandat 3165.204 kb on - strandat 3165.217 kb on - strandat 3165.289 kb on + strandat 3165.289 kb on + strandat 3165.290 kb on - strandat 3165.377 kb on - strand, within CA264_13560at 3165.400 kb on + strand, within CA264_13560at 3165.548 kb on - strandat 3165.570 kb on + strandat 3165.575 kb on - strandat 3165.666 kb on + strandat 3165.701 kb on - strandat 3165.804 kb on + strandat 3165.805 kb on - strandat 3166.001 kb on + strand, within CA264_13565at 3166.002 kb on - strand, within CA264_13565at 3166.102 kb on + strand, within CA264_13565at 3166.102 kb on + strand, within CA264_13565at 3166.103 kb on - strand, within CA264_13565at 3166.103 kb on - strand, within CA264_13565at 3166.103 kb on - strand, within CA264_13565

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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3,163,828 + CA264_13550 0.46 +0.4
3,163,829 - CA264_13550 0.46 -0.2
3,163,840 + CA264_13550 0.47 +0.4
3,163,923 + CA264_13550 0.53 +0.8
3,163,924 - CA264_13550 0.53 +0.6
3,164,056 + CA264_13550 0.62 -0.7
3,164,056 + CA264_13550 0.62 -0.3
3,164,060 + CA264_13550 0.62 -0.8
3,164,061 - CA264_13550 0.62 +2.1
3,164,061 - CA264_13550 0.62 -1.6
3,164,061 - CA264_13550 0.62 -0.2
3,164,119 + CA264_13550 0.66 +0.3
3,164,125 + CA264_13550 0.66 -0.5
3,164,126 - CA264_13550 0.66 +0.2
3,164,141 + CA264_13550 0.67 -0.8
3,164,142 - CA264_13550 0.67 -0.0
3,164,216 + CA264_13550 0.72 +0.1
3,164,345 + CA264_13550 0.81 -1.0
3,164,345 + CA264_13550 0.81 -0.5
3,164,519 + +0.1
3,164,520 - -0.1
3,164,544 + +1.1
3,164,545 - -1.0
3,164,545 - +0.8
3,164,586 - -0.0
3,164,586 - +0.4
3,164,622 + +0.6
3,164,623 - -1.9
3,164,623 - -1.1
3,164,625 - +0.3
3,164,638 - -0.6
3,164,638 - +0.3
3,164,640 + -0.7
3,164,643 - +0.1
3,164,643 - -0.9
3,164,644 + +1.2
3,164,656 + +0.7
3,164,656 + -0.2
3,164,664 + -1.0
3,164,724 - +1.4
3,164,727 + -1.7
3,164,822 - -0.6
3,164,823 + -0.2
3,164,944 + CA264_13555 0.43 -0.7
3,164,948 + CA264_13555 0.44 +1.9
3,164,948 + CA264_13555 0.44 +0.2
3,164,956 + CA264_13555 0.47 +0.5
3,165,024 + CA264_13555 0.70 -0.6
3,165,024 + CA264_13555 0.70 -0.1
3,165,105 + -0.5
3,165,124 + -0.9
3,165,155 - +0.4
3,165,164 - +0.1
3,165,168 - +1.7
3,165,191 + +0.2
3,165,191 + +0.4
3,165,192 - +0.1
3,165,197 - -0.2
3,165,204 - -0.6
3,165,217 - +0.4
3,165,289 + +0.1
3,165,289 + -0.2
3,165,290 - -0.9
3,165,377 - CA264_13560 0.40 +1.8
3,165,400 + CA264_13560 0.50 +0.2
3,165,548 - +0.1
3,165,570 + -1.0
3,165,575 - -0.3
3,165,666 + +0.8
3,165,701 - +0.3
3,165,804 + -0.1
3,165,805 - -0.8
3,166,001 + CA264_13565 0.15 -0.5
3,166,002 - CA264_13565 0.15 +0.0
3,166,102 + CA264_13565 0.19 -0.4
3,166,102 + CA264_13565 0.19 +0.4
3,166,103 - CA264_13565 0.19 +0.2
3,166,103 - CA264_13565 0.19 -0.3
3,166,103 - CA264_13565 0.19 +0.1

Or see this region's nucleotide sequence