Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12105

Experiment: m.b. Fusidic 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_12095 and CA264_12100 are separated by 73 nucleotidesCA264_12100 and CA264_12105 are separated by 111 nucleotidesCA264_12105 and CA264_12110 are separated by 121 nucleotides CA264_12095: CA264_12095 - hypothetical protein, at 2,820,759 to 2,822,327 _12095 CA264_12100: CA264_12100 - NUDIX hydrolase, at 2,822,401 to 2,822,964 _12100 CA264_12105: CA264_12105 - methyltransferase, TIGR04290 family, at 2,823,076 to 2,823,891 _12105 CA264_12110: CA264_12110 - glycosyltransferase, at 2,824,013 to 2,825,122 _12110 Position (kb) 2823 2824Strain fitness (log2 ratio) -2 -1 0 1 2at 2822.106 kb on - strand, within CA264_12095at 2822.143 kb on + strand, within CA264_12095at 2822.173 kb on - strandat 2822.173 kb on - strandat 2822.176 kb on - strandat 2822.210 kb on + strandat 2822.296 kb on + strandat 2822.392 kb on + strandat 2822.393 kb on - strandat 2822.393 kb on - strandat 2822.402 kb on + strandat 2822.434 kb on - strandat 2822.509 kb on + strand, within CA264_12100at 2822.509 kb on + strand, within CA264_12100at 2822.510 kb on - strand, within CA264_12100at 2822.574 kb on - strand, within CA264_12100at 2822.574 kb on - strand, within CA264_12100at 2822.577 kb on - strand, within CA264_12100at 2822.579 kb on + strand, within CA264_12100at 2822.760 kb on - strand, within CA264_12100at 2822.834 kb on + strand, within CA264_12100at 2822.837 kb on + strand, within CA264_12100at 2822.870 kb on - strand, within CA264_12100at 2822.976 kb on - strandat 2822.977 kb on + strandat 2822.981 kb on + strandat 2822.981 kb on + strandat 2822.982 kb on - strandat 2822.984 kb on + strandat 2823.102 kb on - strandat 2823.515 kb on + strand, within CA264_12105at 2823.700 kb on + strand, within CA264_12105at 2823.707 kb on + strand, within CA264_12105at 2823.767 kb on + strand, within CA264_12105at 2823.767 kb on + strand, within CA264_12105at 2823.768 kb on - strand, within CA264_12105at 2823.768 kb on - strand, within CA264_12105at 2823.768 kb on - strand, within CA264_12105at 2823.768 kb on - strand, within CA264_12105at 2823.789 kb on + strand, within CA264_12105at 2823.808 kb on + strand, within CA264_12105at 2823.808 kb on + strand, within CA264_12105at 2823.808 kb on + strand, within CA264_12105at 2823.809 kb on - strand, within CA264_12105at 2823.928 kb on - strandat 2823.928 kb on - strandat 2823.956 kb on + strandat 2823.956 kb on + strandat 2824.014 kb on + strandat 2824.062 kb on - strandat 2824.156 kb on + strand, within CA264_12110at 2824.156 kb on + strand, within CA264_12110at 2824.448 kb on + strand, within CA264_12110at 2824.461 kb on + strand, within CA264_12110at 2824.630 kb on - strand, within CA264_12110at 2824.657 kb on - strand, within CA264_12110at 2824.713 kb on + strand, within CA264_12110at 2824.714 kb on - strand, within CA264_12110at 2824.717 kb on + strand, within CA264_12110at 2824.718 kb on - strand, within CA264_12110at 2824.718 kb on - strand, within CA264_12110at 2824.746 kb on + strand, within CA264_12110at 2824.747 kb on - strand, within CA264_12110at 2824.794 kb on + strand, within CA264_12110at 2824.795 kb on - strand, within CA264_12110at 2824.861 kb on - strand, within CA264_12110

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
remove
2,822,106 - CA264_12095 0.86 -0.3
2,822,143 + CA264_12095 0.88 +0.1
2,822,173 - -0.7
2,822,173 - -0.6
2,822,176 - -0.4
2,822,210 + -0.4
2,822,296 + +0.0
2,822,392 + +1.2
2,822,393 - -0.6
2,822,393 - +0.4
2,822,402 + -0.6
2,822,434 - -0.6
2,822,509 + CA264_12100 0.19 -0.4
2,822,509 + CA264_12100 0.19 +0.1
2,822,510 - CA264_12100 0.19 -0.5
2,822,574 - CA264_12100 0.31 -0.9
2,822,574 - CA264_12100 0.31 -0.4
2,822,577 - CA264_12100 0.31 -1.6
2,822,579 + CA264_12100 0.32 -0.5
2,822,760 - CA264_12100 0.64 -0.3
2,822,834 + CA264_12100 0.77 -2.0
2,822,837 + CA264_12100 0.77 -0.4
2,822,870 - CA264_12100 0.83 -0.9
2,822,976 - -1.3
2,822,977 + -0.1
2,822,981 + +0.1
2,822,981 + -0.5
2,822,982 - -0.6
2,822,984 + +0.3
2,823,102 - +0.6
2,823,515 + CA264_12105 0.54 +0.6
2,823,700 + CA264_12105 0.76 +0.5
2,823,707 + CA264_12105 0.77 -0.4
2,823,767 + CA264_12105 0.85 +0.0
2,823,767 + CA264_12105 0.85 +0.3
2,823,768 - CA264_12105 0.85 +0.0
2,823,768 - CA264_12105 0.85 -0.4
2,823,768 - CA264_12105 0.85 -0.3
2,823,768 - CA264_12105 0.85 -1.5
2,823,789 + CA264_12105 0.87 -0.4
2,823,808 + CA264_12105 0.90 -0.3
2,823,808 + CA264_12105 0.90 +0.6
2,823,808 + CA264_12105 0.90 -0.0
2,823,809 - CA264_12105 0.90 +0.1
2,823,928 - +2.4
2,823,928 - +0.2
2,823,956 + -1.6
2,823,956 + -0.6
2,824,014 + -0.2
2,824,062 - -0.6
2,824,156 + CA264_12110 0.13 -1.2
2,824,156 + CA264_12110 0.13 +0.1
2,824,448 + CA264_12110 0.39 -1.3
2,824,461 + CA264_12110 0.40 -1.0
2,824,630 - CA264_12110 0.56 -0.6
2,824,657 - CA264_12110 0.58 +0.4
2,824,713 + CA264_12110 0.63 +0.7
2,824,714 - CA264_12110 0.63 -0.9
2,824,717 + CA264_12110 0.63 -0.8
2,824,718 - CA264_12110 0.64 +0.4
2,824,718 - CA264_12110 0.64 -1.0
2,824,746 + CA264_12110 0.66 -0.3
2,824,747 - CA264_12110 0.66 -0.6
2,824,794 + CA264_12110 0.70 -1.7
2,824,795 - CA264_12110 0.70 -1.3
2,824,861 - CA264_12110 0.76 +0.7

Or see this region's nucleotide sequence