Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11290

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11280 and CA264_11285 overlap by 14 nucleotidesCA264_11285 and CA264_11290 are separated by 131 nucleotidesCA264_11290 and CA264_11295 are separated by 366 nucleotides CA264_11280: CA264_11280 - SCO family protein, at 2,611,628 to 2,612,311 _11280 CA264_11285: CA264_11285 - cytochrome c class I, at 2,612,298 to 2,612,705 _11285 CA264_11290: CA264_11290 - NADH pyrophosphatase, at 2,612,837 to 2,613,760 _11290 CA264_11295: CA264_11295 - hypothetical protein, at 2,614,127 to 2,614,855 _11295 Position (kb) 2612 2613 2614Strain fitness (log2 ratio) -2 -1 0 1 2at 2611.883 kb on + strand, within CA264_11280at 2611.965 kb on - strand, within CA264_11280at 2612.318 kb on - strandat 2612.726 kb on + strandat 2612.727 kb on - strandat 2612.727 kb on - strandat 2612.839 kb on - strandat 2612.865 kb on + strandat 2612.865 kb on + strandat 2612.866 kb on - strandat 2613.003 kb on + strand, within CA264_11290at 2613.004 kb on - strand, within CA264_11290at 2613.008 kb on - strand, within CA264_11290at 2613.090 kb on + strand, within CA264_11290at 2613.090 kb on + strand, within CA264_11290at 2613.090 kb on + strand, within CA264_11290at 2613.090 kb on + strand, within CA264_11290at 2613.091 kb on - strand, within CA264_11290at 2613.091 kb on - strand, within CA264_11290at 2613.096 kb on - strand, within CA264_11290at 2613.097 kb on + strand, within CA264_11290at 2613.192 kb on + strand, within CA264_11290at 2613.193 kb on - strand, within CA264_11290at 2613.193 kb on - strand, within CA264_11290at 2613.193 kb on - strand, within CA264_11290at 2613.193 kb on - strand, within CA264_11290at 2613.193 kb on - strand, within CA264_11290at 2613.193 kb on - strand, within CA264_11290at 2613.250 kb on + strand, within CA264_11290at 2613.254 kb on + strand, within CA264_11290at 2613.310 kb on + strand, within CA264_11290at 2613.342 kb on + strand, within CA264_11290at 2613.343 kb on - strand, within CA264_11290at 2613.347 kb on - strand, within CA264_11290at 2613.347 kb on - strand, within CA264_11290at 2613.552 kb on + strand, within CA264_11290at 2613.641 kb on + strand, within CA264_11290at 2613.641 kb on + strand, within CA264_11290at 2613.642 kb on - strand, within CA264_11290at 2613.642 kb on - strand, within CA264_11290at 2613.663 kb on - strand, within CA264_11290at 2613.735 kb on - strandat 2613.735 kb on - strandat 2613.764 kb on - strandat 2613.776 kb on - strandat 2613.776 kb on - strandat 2613.807 kb on + strandat 2613.866 kb on + strandat 2613.876 kb on + strandat 2613.877 kb on - strandat 2613.877 kb on - strandat 2613.880 kb on + strandat 2613.881 kb on - strandat 2613.882 kb on + strandat 2613.891 kb on - strandat 2613.912 kb on - strandat 2613.952 kb on - strandat 2613.976 kb on - strandat 2613.976 kb on - strandat 2613.976 kb on - strandat 2613.999 kb on + strandat 2614.000 kb on - strandat 2614.091 kb on - strandat 2614.106 kb on + strandat 2614.108 kb on + strandat 2614.109 kb on - strandat 2614.173 kb on + strandat 2614.173 kb on + strandat 2614.173 kb on + strandat 2614.174 kb on - strandat 2614.180 kb on + strandat 2614.181 kb on - strandat 2614.211 kb on - strand, within CA264_11295at 2614.211 kb on - strand, within CA264_11295at 2614.253 kb on + strand, within CA264_11295at 2614.254 kb on - strand, within CA264_11295at 2614.254 kb on - strand, within CA264_11295at 2614.279 kb on + strand, within CA264_11295at 2614.337 kb on - strand, within CA264_11295at 2614.384 kb on + strand, within CA264_11295at 2614.406 kb on - strand, within CA264_11295at 2614.425 kb on + strand, within CA264_11295at 2614.426 kb on - strand, within CA264_11295at 2614.460 kb on + strand, within CA264_11295at 2614.461 kb on - strand, within CA264_11295at 2614.476 kb on + strand, within CA264_11295at 2614.492 kb on + strand, within CA264_11295at 2614.507 kb on - strand, within CA264_11295at 2614.660 kb on + strand, within CA264_11295at 2614.669 kb on + strand, within CA264_11295at 2614.677 kb on + strand, within CA264_11295at 2614.678 kb on - strand, within CA264_11295at 2614.691 kb on + strand, within CA264_11295at 2614.692 kb on - strand, within CA264_11295at 2614.696 kb on + strand, within CA264_11295at 2614.697 kb on - strand, within CA264_11295

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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2,611,883 + CA264_11280 0.37 -0.3
2,611,965 - CA264_11280 0.49 +0.2
2,612,318 - +0.6
2,612,726 + +0.7
2,612,727 - -0.7
2,612,727 - +2.4
2,612,839 - -1.6
2,612,865 + +0.6
2,612,865 + -0.1
2,612,866 - +0.2
2,613,003 + CA264_11290 0.18 +0.2
2,613,004 - CA264_11290 0.18 +0.0
2,613,008 - CA264_11290 0.19 +1.4
2,613,090 + CA264_11290 0.27 -0.2
2,613,090 + CA264_11290 0.27 -0.4
2,613,090 + CA264_11290 0.27 -0.3
2,613,090 + CA264_11290 0.27 +0.2
2,613,091 - CA264_11290 0.27 +1.5
2,613,091 - CA264_11290 0.27 -0.6
2,613,096 - CA264_11290 0.28 -0.3
2,613,097 + CA264_11290 0.28 +0.7
2,613,192 + CA264_11290 0.38 -1.0
2,613,193 - CA264_11290 0.39 -0.1
2,613,193 - CA264_11290 0.39 -0.6
2,613,193 - CA264_11290 0.39 +0.4
2,613,193 - CA264_11290 0.39 -0.3
2,613,193 - CA264_11290 0.39 +2.0
2,613,193 - CA264_11290 0.39 -0.6
2,613,250 + CA264_11290 0.45 +0.7
2,613,254 + CA264_11290 0.45 -0.2
2,613,310 + CA264_11290 0.51 -0.6
2,613,342 + CA264_11290 0.55 +0.1
2,613,343 - CA264_11290 0.55 +0.5
2,613,347 - CA264_11290 0.55 -1.1
2,613,347 - CA264_11290 0.55 +0.8
2,613,552 + CA264_11290 0.77 -1.0
2,613,641 + CA264_11290 0.87 +0.9
2,613,641 + CA264_11290 0.87 +0.1
2,613,642 - CA264_11290 0.87 -0.6
2,613,642 - CA264_11290 0.87 -1.3
2,613,663 - CA264_11290 0.89 -2.1
2,613,735 - +0.5
2,613,735 - +0.1
2,613,764 - +1.1
2,613,776 - +0.2
2,613,776 - +0.7
2,613,807 + +1.1
2,613,866 + -0.2
2,613,876 + +0.8
2,613,877 - +0.8
2,613,877 - +1.4
2,613,880 + +0.4
2,613,881 - +1.4
2,613,882 + +0.1
2,613,891 - +1.1
2,613,912 - +0.5
2,613,952 - +0.7
2,613,976 - +1.7
2,613,976 - +1.2
2,613,976 - +0.9
2,613,999 + +1.6
2,614,000 - +1.7
2,614,091 - +1.2
2,614,106 + +1.3
2,614,108 + -0.3
2,614,109 - +1.5
2,614,173 + +0.4
2,614,173 + +0.7
2,614,173 + +0.5
2,614,174 - +1.3
2,614,180 + +0.8
2,614,181 - +1.3
2,614,211 - CA264_11295 0.12 +1.9
2,614,211 - CA264_11295 0.12 -0.2
2,614,253 + CA264_11295 0.17 +0.7
2,614,254 - CA264_11295 0.17 +0.5
2,614,254 - CA264_11295 0.17 +1.3
2,614,279 + CA264_11295 0.21 +1.0
2,614,337 - CA264_11295 0.29 +1.6
2,614,384 + CA264_11295 0.35 +1.8
2,614,406 - CA264_11295 0.38 +1.0
2,614,425 + CA264_11295 0.41 +0.2
2,614,426 - CA264_11295 0.41 +1.2
2,614,460 + CA264_11295 0.46 +1.0
2,614,461 - CA264_11295 0.46 +1.1
2,614,476 + CA264_11295 0.48 +0.5
2,614,492 + CA264_11295 0.50 +0.9
2,614,507 - CA264_11295 0.52 +0.4
2,614,660 + CA264_11295 0.73 +0.9
2,614,669 + CA264_11295 0.74 -1.6
2,614,677 + CA264_11295 0.75 +0.6
2,614,678 - CA264_11295 0.76 +0.8
2,614,691 + CA264_11295 0.77 +1.0
2,614,692 - CA264_11295 0.78 +0.1
2,614,696 + CA264_11295 0.78 +1.0
2,614,697 - CA264_11295 0.78 +1.1

Or see this region's nucleotide sequence