Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07775

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07770 and CA264_07775 are separated by 1 nucleotidesCA264_07775 and CA264_07780 are separated by 128 nucleotidesCA264_07780 and CA264_07785 are separated by 45 nucleotides CA264_07770: CA264_07770 - hypothetical protein, at 1,799,512 to 1,800,936 _07770 CA264_07775: CA264_07775 - transcriptional regulator, at 1,800,938 to 1,801,303 _07775 CA264_07780: CA264_07780 - hypothetical protein, at 1,801,432 to 1,801,839 _07780 CA264_07785: CA264_07785 - hypothetical protein, at 1,801,885 to 1,802,451 _07785 Position (kb) 1800 1801 1802Strain fitness (log2 ratio) -1 0 1 2 3at 1799.955 kb on - strand, within CA264_07770at 1799.959 kb on + strand, within CA264_07770at 1799.960 kb on - strand, within CA264_07770at 1800.000 kb on + strand, within CA264_07770at 1800.000 kb on + strand, within CA264_07770at 1800.001 kb on - strand, within CA264_07770at 1800.001 kb on - strand, within CA264_07770at 1800.101 kb on - strand, within CA264_07770at 1800.128 kb on + strand, within CA264_07770at 1800.257 kb on + strand, within CA264_07770at 1800.331 kb on - strand, within CA264_07770at 1800.668 kb on + strand, within CA264_07770at 1800.683 kb on - strand, within CA264_07770at 1800.725 kb on - strand, within CA264_07770at 1800.733 kb on + strand, within CA264_07770at 1800.733 kb on + strand, within CA264_07770at 1800.842 kb on + strandat 1800.859 kb on + strandat 1800.872 kb on + strandat 1800.873 kb on - strandat 1800.881 kb on + strandat 1800.881 kb on + strandat 1800.882 kb on - strandat 1800.882 kb on - strandat 1800.887 kb on - strandat 1800.981 kb on - strand, within CA264_07775at 1801.051 kb on - strand, within CA264_07775at 1801.072 kb on + strand, within CA264_07775at 1801.120 kb on - strand, within CA264_07775at 1801.450 kb on + strandat 1801.561 kb on + strand, within CA264_07780at 1801.561 kb on + strand, within CA264_07780at 1801.561 kb on + strand, within CA264_07780at 1801.562 kb on - strand, within CA264_07780at 1801.565 kb on - strand, within CA264_07780at 1801.747 kb on + strand, within CA264_07780at 1801.748 kb on - strand, within CA264_07780at 1801.774 kb on + strand, within CA264_07780at 1801.820 kb on + strandat 1801.820 kb on + strandat 1801.874 kb on - strandat 1801.879 kb on + strandat 1801.971 kb on - strand, within CA264_07785at 1801.972 kb on + strand, within CA264_07785at 1801.972 kb on + strand, within CA264_07785at 1802.033 kb on + strand, within CA264_07785at 1802.034 kb on - strand, within CA264_07785at 1802.057 kb on + strand, within CA264_07785at 1802.058 kb on - strand, within CA264_07785at 1802.058 kb on - strand, within CA264_07785at 1802.058 kb on - strand, within CA264_07785at 1802.123 kb on + strand, within CA264_07785at 1802.127 kb on - strand, within CA264_07785at 1802.168 kb on + strand, within CA264_07785at 1802.169 kb on - strand, within CA264_07785at 1802.169 kb on - strand, within CA264_07785at 1802.169 kb on - strand, within CA264_07785at 1802.169 kb on - strand, within CA264_07785at 1802.237 kb on + strand, within CA264_07785at 1802.282 kb on + strand, within CA264_07785at 1802.282 kb on + strand, within CA264_07785at 1802.283 kb on - strand, within CA264_07785at 1802.301 kb on - strand, within CA264_07785

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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1,799,955 - CA264_07770 0.31 -0.0
1,799,959 + CA264_07770 0.31 -0.8
1,799,960 - CA264_07770 0.31 -0.1
1,800,000 + CA264_07770 0.34 -0.5
1,800,000 + CA264_07770 0.34 -0.9
1,800,001 - CA264_07770 0.34 -0.9
1,800,001 - CA264_07770 0.34 -0.5
1,800,101 - CA264_07770 0.41 +0.1
1,800,128 + CA264_07770 0.43 +0.3
1,800,257 + CA264_07770 0.52 -1.0
1,800,331 - CA264_07770 0.57 +0.1
1,800,668 + CA264_07770 0.81 -0.1
1,800,683 - CA264_07770 0.82 -0.2
1,800,725 - CA264_07770 0.85 +1.9
1,800,733 + CA264_07770 0.86 +0.1
1,800,733 + CA264_07770 0.86 +0.1
1,800,842 + -0.1
1,800,859 + -0.8
1,800,872 + -1.0
1,800,873 - +0.7
1,800,881 + -0.4
1,800,881 + -0.0
1,800,882 - +0.0
1,800,882 - -1.7
1,800,887 - -0.6
1,800,981 - CA264_07775 0.12 -1.1
1,801,051 - CA264_07775 0.31 -1.7
1,801,072 + CA264_07775 0.37 -0.0
1,801,120 - CA264_07775 0.50 -0.0
1,801,450 + +0.2
1,801,561 + CA264_07780 0.32 -0.1
1,801,561 + CA264_07780 0.32 -0.5
1,801,561 + CA264_07780 0.32 -1.1
1,801,562 - CA264_07780 0.32 +0.3
1,801,565 - CA264_07780 0.33 +0.1
1,801,747 + CA264_07780 0.77 -1.4
1,801,748 - CA264_07780 0.77 -0.8
1,801,774 + CA264_07780 0.84 -0.3
1,801,820 + -0.4
1,801,820 + -0.9
1,801,874 - +0.1
1,801,879 + -0.3
1,801,971 - CA264_07785 0.15 +0.8
1,801,972 + CA264_07785 0.15 -0.4
1,801,972 + CA264_07785 0.15 -0.2
1,802,033 + CA264_07785 0.26 +0.4
1,802,034 - CA264_07785 0.26 +0.1
1,802,057 + CA264_07785 0.30 -0.5
1,802,058 - CA264_07785 0.31 +0.7
1,802,058 - CA264_07785 0.31 -0.0
1,802,058 - CA264_07785 0.31 -0.1
1,802,123 + CA264_07785 0.42 -0.2
1,802,127 - CA264_07785 0.43 +0.3
1,802,168 + CA264_07785 0.50 -0.1
1,802,169 - CA264_07785 0.50 -0.0
1,802,169 - CA264_07785 0.50 -0.8
1,802,169 - CA264_07785 0.50 +0.3
1,802,169 - CA264_07785 0.50 +0.7
1,802,237 + CA264_07785 0.62 -1.0
1,802,282 + CA264_07785 0.70 -0.7
1,802,282 + CA264_07785 0.70 +3.0
1,802,283 - CA264_07785 0.70 +0.1
1,802,301 - CA264_07785 0.73 +0.1

Or see this region's nucleotide sequence