Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07385

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07380 and CA264_07385 are separated by 224 nucleotidesCA264_07385 and CA264_07390 are separated by 102 nucleotidesCA264_07390 and CA264_07395 are separated by 24 nucleotidesCA264_07395 and CA264_07400 are separated by 118 nucleotides CA264_07380: CA264_07380 - NADP-dependent oxidoreductase, at 1,701,318 to 1,702,331 _07380 CA264_07385: CA264_07385 - 50S ribosomal protein L20, at 1,702,556 to 1,702,900 _07385 CA264_07390: CA264_07390 - 50S ribosomal protein L35, at 1,703,003 to 1,703,197 _07390 CA264_07395: CA264_07395 - translation initiation factor IF-3, at 1,703,222 to 1,703,743 _07395 CA264_07400: CA264_07400 - threonine--tRNA ligase, at 1,703,862 to 1,705,799 _07400 Position (kb) 1702 1703Strain fitness (log2 ratio) -2 -1 0 1at 1701.584 kb on + strand, within CA264_07380at 1701.586 kb on + strand, within CA264_07380at 1701.587 kb on - strand, within CA264_07380at 1701.587 kb on - strand, within CA264_07380at 1701.589 kb on + strand, within CA264_07380at 1701.590 kb on - strand, within CA264_07380at 1701.640 kb on + strand, within CA264_07380at 1701.641 kb on - strand, within CA264_07380at 1701.655 kb on - strand, within CA264_07380at 1701.679 kb on + strand, within CA264_07380at 1701.679 kb on + strand, within CA264_07380at 1701.680 kb on - strand, within CA264_07380at 1701.680 kb on - strand, within CA264_07380at 1701.682 kb on - strand, within CA264_07380at 1701.682 kb on - strand, within CA264_07380at 1701.741 kb on - strand, within CA264_07380at 1702.115 kb on + strand, within CA264_07380at 1702.115 kb on + strand, within CA264_07380at 1702.124 kb on + strand, within CA264_07380at 1702.128 kb on - strand, within CA264_07380at 1702.144 kb on + strand, within CA264_07380at 1702.145 kb on - strand, within CA264_07380at 1702.156 kb on + strand, within CA264_07380at 1702.156 kb on + strand, within CA264_07380at 1702.157 kb on - strand, within CA264_07380at 1702.157 kb on - strand, within CA264_07380at 1702.163 kb on + strand, within CA264_07380at 1702.163 kb on + strand, within CA264_07380at 1702.190 kb on - strand, within CA264_07380at 1702.208 kb on - strand, within CA264_07380at 1702.312 kb on - strandat 1702.314 kb on - strandat 1702.314 kb on - strandat 1702.316 kb on + strandat 1702.317 kb on - strandat 1702.317 kb on - strandat 1702.317 kb on - strandat 1702.317 kb on - strandat 1702.322 kb on + strandat 1702.354 kb on + strandat 1702.410 kb on - strandat 1702.425 kb on - strandat 1702.429 kb on - strandat 1702.447 kb on + strandat 1702.494 kb on + strandat 1702.495 kb on - strandat 1702.542 kb on - strandat 1702.542 kb on - strandat 1703.837 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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1,701,584 + CA264_07380 0.26 +0.7
1,701,586 + CA264_07380 0.26 +1.0
1,701,587 - CA264_07380 0.27 +0.2
1,701,587 - CA264_07380 0.27 +0.0
1,701,589 + CA264_07380 0.27 -0.7
1,701,590 - CA264_07380 0.27 +0.1
1,701,640 + CA264_07380 0.32 -0.7
1,701,641 - CA264_07380 0.32 -1.4
1,701,655 - CA264_07380 0.33 +0.4
1,701,679 + CA264_07380 0.36 +0.0
1,701,679 + CA264_07380 0.36 -0.6
1,701,680 - CA264_07380 0.36 +1.2
1,701,680 - CA264_07380 0.36 +0.0
1,701,682 - CA264_07380 0.36 -1.5
1,701,682 - CA264_07380 0.36 -0.5
1,701,741 - CA264_07380 0.42 -0.7
1,702,115 + CA264_07380 0.79 +0.4
1,702,115 + CA264_07380 0.79 -0.5
1,702,124 + CA264_07380 0.79 +0.3
1,702,128 - CA264_07380 0.80 -1.7
1,702,144 + CA264_07380 0.81 +0.9
1,702,145 - CA264_07380 0.82 +0.6
1,702,156 + CA264_07380 0.83 -1.1
1,702,156 + CA264_07380 0.83 -0.4
1,702,157 - CA264_07380 0.83 -0.8
1,702,157 - CA264_07380 0.83 +0.5
1,702,163 + CA264_07380 0.83 +1.4
1,702,163 + CA264_07380 0.83 -1.7
1,702,190 - CA264_07380 0.86 -0.0
1,702,208 - CA264_07380 0.88 -0.9
1,702,312 - -0.3
1,702,314 - +0.2
1,702,314 - -0.6
1,702,316 + -0.2
1,702,317 - -0.6
1,702,317 - -0.4
1,702,317 - -0.5
1,702,317 - +0.4
1,702,322 + +0.9
1,702,354 + -0.3
1,702,410 - +0.7
1,702,425 - -1.8
1,702,429 - -0.3
1,702,447 + +0.2
1,702,494 + +0.5
1,702,495 - -0.1
1,702,542 - +1.4
1,702,542 - -0.1
1,703,837 - -0.4

Or see this region's nucleotide sequence