Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04540

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04535 and CA264_04540 are separated by 145 nucleotidesCA264_04540 and CA264_04545 overlap by 6 nucleotides CA264_04535: CA264_04535 - hypothetical protein, at 1,047,614 to 1,049,398 _04535 CA264_04540: CA264_04540 - PspC family transcriptional regulator, at 1,049,544 to 1,049,762 _04540 CA264_04545: CA264_04545 - dTDP-Rha--alpha-D-GlcNAc-pyrophosphate polyprenol alpha-3-L-rhamnosyltransferase, at 1,049,757 to 1,050,764 _04545 Position (kb) 1049 1050Strain fitness (log2 ratio) -2 -1 0 1at 1048.625 kb on + strand, within CA264_04535at 1048.625 kb on + strand, within CA264_04535at 1048.656 kb on - strand, within CA264_04535at 1048.671 kb on + strand, within CA264_04535at 1048.780 kb on - strand, within CA264_04535at 1048.898 kb on - strand, within CA264_04535at 1048.974 kb on + strand, within CA264_04535at 1048.975 kb on - strand, within CA264_04535at 1049.050 kb on - strand, within CA264_04535at 1049.121 kb on + strand, within CA264_04535at 1049.122 kb on - strand, within CA264_04535at 1049.157 kb on + strand, within CA264_04535at 1049.163 kb on + strand, within CA264_04535at 1049.164 kb on - strand, within CA264_04535at 1049.182 kb on - strand, within CA264_04535at 1049.182 kb on - strand, within CA264_04535at 1049.389 kb on - strandat 1049.398 kb on + strandat 1049.429 kb on + strandat 1049.430 kb on - strandat 1049.465 kb on + strandat 1049.469 kb on - strandat 1049.469 kb on - strandat 1049.469 kb on - strandat 1049.469 kb on - strandat 1049.469 kb on - strandat 1049.492 kb on + strandat 1049.519 kb on - strandat 1049.524 kb on - strandat 1049.540 kb on + strandat 1049.559 kb on + strandat 1049.560 kb on - strandat 1049.562 kb on + strandat 1049.562 kb on + strandat 1049.562 kb on + strandat 1049.562 kb on + strandat 1049.563 kb on - strandat 1049.627 kb on + strand, within CA264_04540at 1049.628 kb on - strand, within CA264_04540at 1049.650 kb on - strand, within CA264_04540at 1049.758 kb on + strandat 1049.758 kb on + strandat 1049.758 kb on + strandat 1049.761 kb on - strandat 1049.761 kb on - strandat 1049.761 kb on - strandat 1049.761 kb on - strandat 1049.761 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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1,048,625 + CA264_04535 0.57 +0.6
1,048,625 + CA264_04535 0.57 +0.2
1,048,656 - CA264_04535 0.58 -1.4
1,048,671 + CA264_04535 0.59 +0.9
1,048,780 - CA264_04535 0.65 -0.7
1,048,898 - CA264_04535 0.72 +0.7
1,048,974 + CA264_04535 0.76 +0.7
1,048,975 - CA264_04535 0.76 +0.6
1,049,050 - CA264_04535 0.80 -0.2
1,049,121 + CA264_04535 0.84 -0.3
1,049,122 - CA264_04535 0.84 +0.1
1,049,157 + CA264_04535 0.86 -0.3
1,049,163 + CA264_04535 0.87 +0.2
1,049,164 - CA264_04535 0.87 -0.3
1,049,182 - CA264_04535 0.88 +1.1
1,049,182 - CA264_04535 0.88 -0.4
1,049,389 - -0.1
1,049,398 + -1.0
1,049,429 + -0.6
1,049,430 - -1.4
1,049,465 + -0.8
1,049,469 - -0.2
1,049,469 - -1.9
1,049,469 - -2.3
1,049,469 - -0.8
1,049,469 - +0.6
1,049,492 + -0.4
1,049,519 - -0.9
1,049,524 - -1.8
1,049,540 + -0.3
1,049,559 + -0.9
1,049,560 - -0.2
1,049,562 + +0.0
1,049,562 + -0.0
1,049,562 + +1.5
1,049,562 + -0.1
1,049,563 - +0.5
1,049,627 + CA264_04540 0.38 +0.1
1,049,628 - CA264_04540 0.38 -0.2
1,049,650 - CA264_04540 0.48 -0.5
1,049,758 + +0.1
1,049,758 + -0.1
1,049,758 + -1.3
1,049,761 - -1.3
1,049,761 - -0.7
1,049,761 - -0.7
1,049,761 - -0.7
1,049,761 - +0.9

Or see this region's nucleotide sequence