Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03065

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03055 and CA264_03060 overlap by 4 nucleotidesCA264_03060 and CA264_03065 are separated by 40 nucleotidesCA264_03065 and CA264_03070 are separated by 20 nucleotides CA264_03055: CA264_03055 - glycosyltransferase, at 711,525 to 712,772 _03055 CA264_03060: CA264_03060 - nucleotide-diphospho-sugar transferase, at 712,769 to 713,704 _03060 CA264_03065: CA264_03065 - hypothetical protein, at 713,745 to 715,061 _03065 CA264_03070: CA264_03070 - group 1 glycosyl transferase, at 715,082 to 716,287 _03070 Position (kb) 713 714 715 716Strain fitness (log2 ratio) -2 -1 0 1 2at 712.751 kb on - strandat 712.759 kb on - strandat 712.773 kb on - strandat 712.778 kb on - strandat 712.895 kb on + strand, within CA264_03060at 713.019 kb on + strand, within CA264_03060at 713.019 kb on + strand, within CA264_03060at 713.020 kb on - strand, within CA264_03060at 713.020 kb on - strand, within CA264_03060at 713.040 kb on + strand, within CA264_03060at 713.093 kb on + strand, within CA264_03060at 713.101 kb on - strand, within CA264_03060at 713.101 kb on - strand, within CA264_03060at 713.164 kb on - strand, within CA264_03060at 713.209 kb on + strand, within CA264_03060at 713.209 kb on + strand, within CA264_03060at 713.210 kb on - strand, within CA264_03060at 713.244 kb on + strand, within CA264_03060at 713.245 kb on - strand, within CA264_03060at 713.247 kb on + strand, within CA264_03060at 713.248 kb on - strand, within CA264_03060at 713.253 kb on + strand, within CA264_03060at 713.284 kb on - strand, within CA264_03060at 713.319 kb on + strand, within CA264_03060at 713.323 kb on + strand, within CA264_03060at 713.324 kb on - strand, within CA264_03060at 713.324 kb on - strand, within CA264_03060at 713.324 kb on - strand, within CA264_03060at 713.391 kb on - strand, within CA264_03060at 713.392 kb on + strand, within CA264_03060at 713.510 kb on + strand, within CA264_03060at 713.621 kb on + strandat 713.651 kb on + strandat 713.658 kb on - strandat 713.693 kb on - strandat 713.698 kb on + strandat 713.704 kb on + strandat 713.712 kb on + strandat 713.720 kb on - strandat 713.724 kb on + strandat 713.724 kb on + strandat 713.724 kb on + strandat 713.726 kb on + strandat 713.726 kb on + strandat 713.727 kb on - strandat 713.727 kb on - strandat 713.729 kb on - strandat 713.729 kb on - strandat 713.729 kb on - strandat 713.735 kb on - strandat 713.735 kb on - strandat 713.747 kb on - strandat 713.833 kb on - strandat 713.834 kb on + strandat 713.867 kb on - strandat 713.928 kb on + strand, within CA264_03065at 713.944 kb on - strand, within CA264_03065at 713.946 kb on - strand, within CA264_03065at 713.946 kb on - strand, within CA264_03065at 713.956 kb on - strand, within CA264_03065at 713.957 kb on + strand, within CA264_03065at 714.010 kb on + strand, within CA264_03065at 714.010 kb on + strand, within CA264_03065at 714.011 kb on - strand, within CA264_03065at 714.011 kb on - strand, within CA264_03065at 714.012 kb on + strand, within CA264_03065at 714.013 kb on - strand, within CA264_03065at 714.069 kb on + strand, within CA264_03065at 714.069 kb on + strand, within CA264_03065at 714.074 kb on - strand, within CA264_03065at 714.208 kb on + strand, within CA264_03065at 714.227 kb on - strand, within CA264_03065at 714.365 kb on + strand, within CA264_03065at 714.424 kb on + strand, within CA264_03065at 714.424 kb on + strand, within CA264_03065at 714.424 kb on + strand, within CA264_03065at 714.424 kb on + strand, within CA264_03065at 714.425 kb on - strand, within CA264_03065at 714.425 kb on - strand, within CA264_03065at 714.425 kb on - strand, within CA264_03065at 714.447 kb on - strand, within CA264_03065at 714.456 kb on + strand, within CA264_03065at 714.456 kb on + strand, within CA264_03065at 714.517 kb on + strand, within CA264_03065at 714.518 kb on - strand, within CA264_03065at 714.518 kb on - strand, within CA264_03065at 714.577 kb on + strand, within CA264_03065at 714.578 kb on - strand, within CA264_03065at 714.584 kb on + strand, within CA264_03065at 714.585 kb on - strand, within CA264_03065at 714.678 kb on + strand, within CA264_03065at 714.679 kb on - strand, within CA264_03065at 714.679 kb on - strand, within CA264_03065at 714.689 kb on + strand, within CA264_03065at 714.752 kb on - strand, within CA264_03065at 714.790 kb on - strand, within CA264_03065at 714.803 kb on - strand, within CA264_03065at 714.809 kb on - strand, within CA264_03065at 714.811 kb on + strand, within CA264_03065at 714.812 kb on - strand, within CA264_03065at 714.905 kb on - strand, within CA264_03065at 714.972 kb on - strandat 715.038 kb on + strandat 715.038 kb on + strandat 715.049 kb on - strandat 715.053 kb on + strandat 715.053 kb on + strandat 715.054 kb on - strandat 715.054 kb on - strandat 715.090 kb on + strandat 715.099 kb on - strandat 715.126 kb on + strandat 715.127 kb on - strandat 715.135 kb on - strandat 715.138 kb on + strandat 715.139 kb on - strandat 715.139 kb on - strandat 715.139 kb on - strandat 715.145 kb on + strandat 715.167 kb on - strandat 715.234 kb on + strand, within CA264_03070at 715.250 kb on + strand, within CA264_03070at 715.286 kb on - strand, within CA264_03070at 715.292 kb on - strand, within CA264_03070at 715.292 kb on - strand, within CA264_03070at 715.341 kb on - strand, within CA264_03070at 715.399 kb on + strand, within CA264_03070at 715.400 kb on - strand, within CA264_03070at 715.477 kb on + strand, within CA264_03070at 715.477 kb on + strand, within CA264_03070at 715.574 kb on + strand, within CA264_03070at 715.575 kb on - strand, within CA264_03070at 715.575 kb on - strand, within CA264_03070at 715.583 kb on + strand, within CA264_03070at 715.685 kb on + strand, within CA264_03070at 715.685 kb on + strand, within CA264_03070at 715.690 kb on - strand, within CA264_03070at 715.747 kb on + strand, within CA264_03070at 715.799 kb on - strand, within CA264_03070at 715.799 kb on - strand, within CA264_03070at 715.857 kb on + strand, within CA264_03070at 715.901 kb on - strand, within CA264_03070at 715.916 kb on + strand, within CA264_03070at 715.968 kb on + strand, within CA264_03070at 715.968 kb on + strand, within CA264_03070at 715.969 kb on - strand, within CA264_03070at 715.969 kb on - strand, within CA264_03070at 715.978 kb on - strand, within CA264_03070at 715.983 kb on + strand, within CA264_03070at 715.983 kb on + strand, within CA264_03070at 715.984 kb on - strand, within CA264_03070at 715.984 kb on - strand, within CA264_03070at 715.984 kb on - strand, within CA264_03070at 715.984 kb on - strand, within CA264_03070at 716.010 kb on - strand, within CA264_03070at 716.015 kb on - strand, within CA264_03070

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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712,751 - -0.3
712,759 - -0.8
712,773 - -1.3
712,778 - -0.4
712,895 + CA264_03060 0.13 +0.3
713,019 + CA264_03060 0.27 +0.2
713,019 + CA264_03060 0.27 -0.3
713,020 - CA264_03060 0.27 +0.1
713,020 - CA264_03060 0.27 -0.6
713,040 + CA264_03060 0.29 -1.2
713,093 + CA264_03060 0.35 -1.5
713,101 - CA264_03060 0.35 -1.1
713,101 - CA264_03060 0.35 -0.4
713,164 - CA264_03060 0.42 -0.6
713,209 + CA264_03060 0.47 -1.2
713,209 + CA264_03060 0.47 -0.4
713,210 - CA264_03060 0.47 -0.5
713,244 + CA264_03060 0.51 -0.7
713,245 - CA264_03060 0.51 +0.4
713,247 + CA264_03060 0.51 -0.7
713,248 - CA264_03060 0.51 -0.2
713,253 + CA264_03060 0.52 -0.4
713,284 - CA264_03060 0.55 -0.1
713,319 + CA264_03060 0.59 -0.4
713,323 + CA264_03060 0.59 +0.4
713,324 - CA264_03060 0.59 -1.8
713,324 - CA264_03060 0.59 +0.7
713,324 - CA264_03060 0.59 -0.9
713,391 - CA264_03060 0.66 +0.0
713,392 + CA264_03060 0.67 +0.2
713,510 + CA264_03060 0.79 -1.9
713,621 + -1.1
713,651 + -0.6
713,658 - -1.4
713,693 - +0.5
713,698 + -0.8
713,704 + -0.6
713,712 + -0.8
713,720 - -0.5
713,724 + -0.8
713,724 + -0.1
713,724 + +0.2
713,726 + -0.7
713,726 + -0.7
713,727 - -0.3
713,727 - -1.1
713,729 - -1.0
713,729 - +1.8
713,729 - -0.9
713,735 - -0.9
713,735 - -0.2
713,747 - -0.3
713,833 - -0.3
713,834 + -0.1
713,867 - +0.1
713,928 + CA264_03065 0.14 +0.3
713,944 - CA264_03065 0.15 +0.8
713,946 - CA264_03065 0.15 -0.5
713,946 - CA264_03065 0.15 -0.7
713,956 - CA264_03065 0.16 -0.8
713,957 + CA264_03065 0.16 +0.0
714,010 + CA264_03065 0.20 -0.7
714,010 + CA264_03065 0.20 -0.6
714,011 - CA264_03065 0.20 -0.7
714,011 - CA264_03065 0.20 +0.1
714,012 + CA264_03065 0.20 -0.5
714,013 - CA264_03065 0.20 -1.4
714,069 + CA264_03065 0.25 +0.2
714,069 + CA264_03065 0.25 -0.5
714,074 - CA264_03065 0.25 -0.2
714,208 + CA264_03065 0.35 -0.2
714,227 - CA264_03065 0.37 -0.4
714,365 + CA264_03065 0.47 -0.2
714,424 + CA264_03065 0.52 -0.7
714,424 + CA264_03065 0.52 +0.2
714,424 + CA264_03065 0.52 -0.1
714,424 + CA264_03065 0.52 +0.7
714,425 - CA264_03065 0.52 -0.9
714,425 - CA264_03065 0.52 -0.4
714,425 - CA264_03065 0.52 +0.5
714,447 - CA264_03065 0.53 -0.4
714,456 + CA264_03065 0.54 -0.2
714,456 + CA264_03065 0.54 -2.1
714,517 + CA264_03065 0.59 +0.4
714,518 - CA264_03065 0.59 -0.4
714,518 - CA264_03065 0.59 -0.2
714,577 + CA264_03065 0.63 +0.3
714,578 - CA264_03065 0.63 -0.2
714,584 + CA264_03065 0.64 -0.2
714,585 - CA264_03065 0.64 -0.6
714,678 + CA264_03065 0.71 -0.2
714,679 - CA264_03065 0.71 -0.2
714,679 - CA264_03065 0.71 -0.9
714,689 + CA264_03065 0.72 -1.2
714,752 - CA264_03065 0.76 -0.4
714,790 - CA264_03065 0.79 -0.3
714,803 - CA264_03065 0.80 -1.4
714,809 - CA264_03065 0.81 -1.8
714,811 + CA264_03065 0.81 -0.8
714,812 - CA264_03065 0.81 +0.2
714,905 - CA264_03065 0.88 +0.2
714,972 - +0.1
715,038 + -0.5
715,038 + -1.0
715,049 - -0.4
715,053 + -0.7
715,053 + -0.3
715,054 - -0.5
715,054 - -0.1
715,090 + +1.1
715,099 - -0.9
715,126 + -1.1
715,127 - -1.0
715,135 - -0.9
715,138 + -0.2
715,139 - -0.8
715,139 - -0.5
715,139 - -0.1
715,145 + +0.0
715,167 - -0.8
715,234 + CA264_03070 0.13 -0.9
715,250 + CA264_03070 0.14 -1.6
715,286 - CA264_03070 0.17 -0.6
715,292 - CA264_03070 0.17 -1.5
715,292 - CA264_03070 0.17 -0.6
715,341 - CA264_03070 0.21 +0.0
715,399 + CA264_03070 0.26 -0.7
715,400 - CA264_03070 0.26 -0.2
715,477 + CA264_03070 0.33 -0.5
715,477 + CA264_03070 0.33 +0.6
715,574 + CA264_03070 0.41 -2.1
715,575 - CA264_03070 0.41 +0.4
715,575 - CA264_03070 0.41 -1.8
715,583 + CA264_03070 0.42 +0.1
715,685 + CA264_03070 0.50 -0.8
715,685 + CA264_03070 0.50 -0.2
715,690 - CA264_03070 0.50 -0.2
715,747 + CA264_03070 0.55 -0.1
715,799 - CA264_03070 0.59 -0.7
715,799 - CA264_03070 0.59 -0.3
715,857 + CA264_03070 0.64 +0.9
715,901 - CA264_03070 0.68 -1.5
715,916 + CA264_03070 0.69 +0.5
715,968 + CA264_03070 0.73 -0.5
715,968 + CA264_03070 0.73 -1.7
715,969 - CA264_03070 0.74 +0.8
715,969 - CA264_03070 0.74 +0.3
715,978 - CA264_03070 0.74 -0.6
715,983 + CA264_03070 0.75 -0.7
715,983 + CA264_03070 0.75 +0.0
715,984 - CA264_03070 0.75 -0.3
715,984 - CA264_03070 0.75 +0.4
715,984 - CA264_03070 0.75 -0.5
715,984 - CA264_03070 0.75 +0.1
716,010 - CA264_03070 0.77 +0.3
716,015 - CA264_03070 0.77 -0.5

Or see this region's nucleotide sequence