Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00905

Experiment: m.b. Fusidic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00895 and CA264_00900 are separated by 95 nucleotidesCA264_00900 and CA264_00905 are separated by 226 nucleotidesCA264_00905 and CA264_00910 are separated by 116 nucleotides CA264_00895: CA264_00895 - hypothetical protein, at 192,278 to 193,285 _00895 CA264_00900: CA264_00900 - phosphonoacetate hydrolase, at 193,381 to 193,722 _00900 CA264_00905: CA264_00905 - hypothetical protein, at 193,949 to 194,410 _00905 CA264_00910: CA264_00910 - hypothetical protein, at 194,527 to 195,810 _00910 Position (kb) 193 194 195Strain fitness (log2 ratio) -2 -1 0 1 2at 192.968 kb on - strand, within CA264_00895at 192.970 kb on + strand, within CA264_00895at 192.979 kb on + strand, within CA264_00895at 192.990 kb on + strand, within CA264_00895at 193.006 kb on - strand, within CA264_00895at 193.089 kb on - strand, within CA264_00895at 193.090 kb on + strand, within CA264_00895at 193.090 kb on + strand, within CA264_00895at 193.090 kb on + strand, within CA264_00895at 193.091 kb on - strand, within CA264_00895at 193.123 kb on + strand, within CA264_00895at 193.124 kb on - strand, within CA264_00895at 193.127 kb on + strand, within CA264_00895at 193.127 kb on + strand, within CA264_00895at 193.151 kb on - strand, within CA264_00895at 193.151 kb on - strand, within CA264_00895at 193.173 kb on + strand, within CA264_00895at 193.174 kb on - strand, within CA264_00895at 193.174 kb on - strand, within CA264_00895at 193.174 kb on - strand, within CA264_00895at 193.176 kb on - strand, within CA264_00895at 193.176 kb on - strand, within CA264_00895at 193.176 kb on - strand, within CA264_00895at 193.177 kb on + strand, within CA264_00895at 193.177 kb on + strand, within CA264_00895at 193.177 kb on + strand, within CA264_00895at 193.178 kb on - strand, within CA264_00895at 193.184 kb on + strand, within CA264_00895at 193.209 kb on + strandat 193.209 kb on + strandat 193.209 kb on + strandat 193.234 kb on - strandat 193.283 kb on + strandat 193.284 kb on - strandat 193.304 kb on - strandat 193.304 kb on - strandat 193.307 kb on + strandat 193.307 kb on + strandat 193.307 kb on + strandat 193.307 kb on + strandat 193.324 kb on - strandat 193.337 kb on - strandat 193.337 kb on - strandat 193.362 kb on + strandat 193.363 kb on - strandat 193.366 kb on + strandat 193.369 kb on + strandat 193.369 kb on + strandat 193.370 kb on - strandat 193.414 kb on - strandat 193.414 kb on - strandat 193.511 kb on + strand, within CA264_00900at 193.512 kb on - strand, within CA264_00900at 193.512 kb on - strand, within CA264_00900at 193.518 kb on - strand, within CA264_00900at 193.521 kb on - strand, within CA264_00900at 193.539 kb on - strand, within CA264_00900at 193.747 kb on - strandat 193.756 kb on + strandat 193.772 kb on - strandat 193.816 kb on - strandat 193.871 kb on + strandat 193.871 kb on + strandat 193.871 kb on + strandat 193.872 kb on - strandat 193.872 kb on - strandat 193.872 kb on - strandat 193.983 kb on - strandat 193.984 kb on + strandat 193.985 kb on - strandat 194.237 kb on - strand, within CA264_00905at 194.304 kb on + strand, within CA264_00905at 194.362 kb on - strand, within CA264_00905at 194.362 kb on - strand, within CA264_00905at 194.391 kb on + strandat 194.392 kb on - strandat 194.392 kb on - strandat 194.397 kb on - strandat 194.397 kb on - strandat 194.397 kb on - strandat 194.458 kb on - strandat 194.494 kb on + strandat 194.514 kb on - strandat 194.516 kb on - strandat 194.548 kb on + strandat 194.548 kb on + strandat 194.549 kb on - strandat 194.571 kb on + strandat 194.572 kb on - strandat 194.632 kb on + strandat 194.633 kb on - strandat 194.633 kb on - strandat 194.633 kb on - strandat 194.884 kb on + strand, within CA264_00910at 195.015 kb on - strand, within CA264_00910at 195.026 kb on - strand, within CA264_00910at 195.066 kb on + strand, within CA264_00910at 195.067 kb on - strand, within CA264_00910at 195.067 kb on - strand, within CA264_00910at 195.171 kb on - strand, within CA264_00910at 195.243 kb on - strand, within CA264_00910at 195.254 kb on - strand, within CA264_00910at 195.259 kb on + strand, within CA264_00910at 195.260 kb on - strand, within CA264_00910at 195.275 kb on - strand, within CA264_00910at 195.275 kb on - strand, within CA264_00910

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.001 mg/ml
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192,968 - CA264_00895 0.68 +0.1
192,970 + CA264_00895 0.69 -0.8
192,979 + CA264_00895 0.70 -0.4
192,990 + CA264_00895 0.71 +0.1
193,006 - CA264_00895 0.72 -2.4
193,089 - CA264_00895 0.80 +0.1
193,090 + CA264_00895 0.81 -0.2
193,090 + CA264_00895 0.81 -0.0
193,090 + CA264_00895 0.81 +0.3
193,091 - CA264_00895 0.81 -0.1
193,123 + CA264_00895 0.84 -0.0
193,124 - CA264_00895 0.84 -0.1
193,127 + CA264_00895 0.84 -0.2
193,127 + CA264_00895 0.84 +1.2
193,151 - CA264_00895 0.87 +0.1
193,151 - CA264_00895 0.87 +0.1
193,173 + CA264_00895 0.89 +0.9
193,174 - CA264_00895 0.89 -0.3
193,174 - CA264_00895 0.89 +0.9
193,174 - CA264_00895 0.89 -0.5
193,176 - CA264_00895 0.89 -0.1
193,176 - CA264_00895 0.89 -0.7
193,176 - CA264_00895 0.89 -0.2
193,177 + CA264_00895 0.89 -0.5
193,177 + CA264_00895 0.89 -0.8
193,177 + CA264_00895 0.89 +0.5
193,178 - CA264_00895 0.89 -0.5
193,184 + CA264_00895 0.90 +1.0
193,209 + -0.6
193,209 + +0.0
193,209 + -0.4
193,234 - +1.6
193,283 + +0.1
193,284 - +1.2
193,304 - -0.2
193,304 - -0.0
193,307 + +0.0
193,307 + -0.2
193,307 + -0.1
193,307 + +0.5
193,324 - -0.6
193,337 - -0.1
193,337 - +0.9
193,362 + -0.1
193,363 - +0.6
193,366 + +0.6
193,369 + -1.8
193,369 + +0.1
193,370 - -0.6
193,414 - +0.2
193,414 - -0.0
193,511 + CA264_00900 0.38 +0.0
193,512 - CA264_00900 0.38 -0.7
193,512 - CA264_00900 0.38 -0.3
193,518 - CA264_00900 0.40 -0.2
193,521 - CA264_00900 0.41 -0.2
193,539 - CA264_00900 0.46 +0.3
193,747 - -1.4
193,756 + -2.1
193,772 - +0.1
193,816 - +0.7
193,871 + +0.6
193,871 + -1.2
193,871 + +0.1
193,872 - -0.3
193,872 - -0.1
193,872 - -1.9
193,983 - -0.6
193,984 + -0.4
193,985 - -0.2
194,237 - CA264_00905 0.62 -0.5
194,304 + CA264_00905 0.77 -0.0
194,362 - CA264_00905 0.89 -0.8
194,362 - CA264_00905 0.89 -1.2
194,391 + +0.7
194,392 - -1.4
194,392 - +0.1
194,397 - -0.2
194,397 - +0.8
194,397 - +0.3
194,458 - -0.5
194,494 + -0.5
194,514 - -0.6
194,516 - +0.0
194,548 + -0.6
194,548 + -0.9
194,549 - -0.4
194,571 + -0.5
194,572 - -1.7
194,632 + -0.7
194,633 - -0.7
194,633 - +0.2
194,633 - +1.2
194,884 + CA264_00910 0.28 -0.5
195,015 - CA264_00910 0.38 +2.3
195,026 - CA264_00910 0.39 +0.9
195,066 + CA264_00910 0.42 -0.4
195,067 - CA264_00910 0.42 -0.3
195,067 - CA264_00910 0.42 -0.8
195,171 - CA264_00910 0.50 -0.4
195,243 - CA264_00910 0.56 +1.2
195,254 - CA264_00910 0.57 -2.2
195,259 + CA264_00910 0.57 -0.9
195,260 - CA264_00910 0.57 +0.0
195,275 - CA264_00910 0.58 -0.4
195,275 - CA264_00910 0.58 -1.3

Or see this region's nucleotide sequence