Experiment: m.b. Fusidic 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19825 and CA264_19830 are separated by 531 nucleotides CA264_19830 and CA264_19835 are separated by 2 nucleotides
CA264_19825: CA264_19825 - Tat (twin-arginine translocation) pathway signal sequence containing protein, at 4,574,637 to 4,575,305
_19825
CA264_19830: CA264_19830 - hypothetical protein, at 4,575,837 to 4,577,285
_19830
CA264_19835: CA264_19835 - chorismate synthase, at 4,577,288 to 4,578,367
_19835
Position (kb)
4575
4576
4577
4578 Strain fitness (log2 ratio)
-2
-1
0
1 at 4574.840 kb on - strand, within CA264_19825 at 4574.955 kb on + strand, within CA264_19825 at 4574.955 kb on + strand, within CA264_19825 at 4574.955 kb on + strand, within CA264_19825 at 4575.031 kb on - strand, within CA264_19825 at 4575.031 kb on - strand, within CA264_19825 at 4575.110 kb on + strand, within CA264_19825 at 4575.142 kb on + strand, within CA264_19825 at 4575.148 kb on + strand, within CA264_19825 at 4575.149 kb on - strand, within CA264_19825 at 4575.250 kb on - strand at 4575.354 kb on - strand at 4575.390 kb on + strand at 4575.390 kb on + strand at 4575.468 kb on - strand at 4575.557 kb on + strand at 4575.557 kb on + strand at 4575.557 kb on + strand at 4575.557 kb on + strand at 4575.560 kb on - strand at 4575.561 kb on + strand at 4575.561 kb on + strand at 4575.562 kb on - strand at 4575.567 kb on + strand at 4575.570 kb on - strand at 4575.570 kb on - strand at 4575.600 kb on - strand at 4575.605 kb on - strand at 4575.612 kb on - strand at 4575.797 kb on + strand at 4575.878 kb on - strand at 4575.990 kb on + strand, within CA264_19830 at 4575.990 kb on + strand, within CA264_19830 at 4575.991 kb on - strand, within CA264_19830 at 4575.991 kb on - strand, within CA264_19830 at 4576.036 kb on - strand, within CA264_19830 at 4576.125 kb on + strand, within CA264_19830 at 4576.128 kb on - strand, within CA264_19830 at 4576.189 kb on + strand, within CA264_19830 at 4576.189 kb on + strand, within CA264_19830 at 4576.189 kb on + strand, within CA264_19830 at 4576.189 kb on + strand, within CA264_19830 at 4576.229 kb on + strand, within CA264_19830 at 4576.303 kb on + strand, within CA264_19830 at 4576.304 kb on - strand, within CA264_19830 at 4576.392 kb on + strand, within CA264_19830 at 4576.393 kb on - strand, within CA264_19830 at 4576.567 kb on - strand, within CA264_19830 at 4576.567 kb on - strand, within CA264_19830 at 4576.639 kb on - strand, within CA264_19830 at 4576.639 kb on - strand, within CA264_19830 at 4576.641 kb on - strand, within CA264_19830 at 4576.701 kb on + strand, within CA264_19830 at 4576.829 kb on + strand, within CA264_19830 at 4576.829 kb on + strand, within CA264_19830 at 4576.829 kb on + strand, within CA264_19830 at 4576.830 kb on - strand, within CA264_19830 at 4576.830 kb on - strand, within CA264_19830 at 4576.833 kb on + strand, within CA264_19830 at 4577.043 kb on + strand, within CA264_19830 at 4577.043 kb on + strand, within CA264_19830 at 4577.048 kb on + strand, within CA264_19830 at 4577.067 kb on + strand, within CA264_19830 at 4577.158 kb on - strand at 4577.158 kb on - strand at 4577.284 kb on - strand at 4577.287 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml remove 4,574,840 - CA264_19825 0.30 -1.7 4,574,955 + CA264_19825 0.48 +0.1 4,574,955 + CA264_19825 0.48 -1.6 4,574,955 + CA264_19825 0.48 -0.8 4,575,031 - CA264_19825 0.59 -1.0 4,575,031 - CA264_19825 0.59 -0.1 4,575,110 + CA264_19825 0.71 -0.8 4,575,142 + CA264_19825 0.75 -0.4 4,575,148 + CA264_19825 0.76 +0.4 4,575,149 - CA264_19825 0.77 +0.4 4,575,250 - -0.2 4,575,354 - +0.2 4,575,390 + -0.9 4,575,390 + -0.5 4,575,468 - -0.8 4,575,557 + +0.7 4,575,557 + +1.0 4,575,557 + +0.3 4,575,557 + -0.3 4,575,560 - -0.5 4,575,561 + -1.0 4,575,561 + -0.1 4,575,562 - -1.2 4,575,567 + +0.4 4,575,570 - +0.2 4,575,570 - -0.5 4,575,600 - -0.6 4,575,605 - +0.1 4,575,612 - -0.2 4,575,797 + -0.4 4,575,878 - -0.6 4,575,990 + CA264_19830 0.11 -0.8 4,575,990 + CA264_19830 0.11 -1.8 4,575,991 - CA264_19830 0.11 -0.5 4,575,991 - CA264_19830 0.11 -0.6 4,576,036 - CA264_19830 0.14 -1.3 4,576,125 + CA264_19830 0.20 -0.6 4,576,128 - CA264_19830 0.20 -2.0 4,576,189 + CA264_19830 0.24 -0.2 4,576,189 + CA264_19830 0.24 -0.7 4,576,189 + CA264_19830 0.24 +0.0 4,576,189 + CA264_19830 0.24 -1.0 4,576,229 + CA264_19830 0.27 -0.0 4,576,303 + CA264_19830 0.32 -0.5 4,576,304 - CA264_19830 0.32 -0.4 4,576,392 + CA264_19830 0.38 -0.0 4,576,393 - CA264_19830 0.38 -1.0 4,576,567 - CA264_19830 0.50 -1.8 4,576,567 - CA264_19830 0.50 -0.6 4,576,639 - CA264_19830 0.55 +0.3 4,576,639 - CA264_19830 0.55 +1.1 4,576,641 - CA264_19830 0.55 -0.5 4,576,701 + CA264_19830 0.60 +0.7 4,576,829 + CA264_19830 0.68 +0.3 4,576,829 + CA264_19830 0.68 +0.0 4,576,829 + CA264_19830 0.68 -0.6 4,576,830 - CA264_19830 0.69 -0.3 4,576,830 - CA264_19830 0.69 -0.2 4,576,833 + CA264_19830 0.69 -0.4 4,577,043 + CA264_19830 0.83 +1.5 4,577,043 + CA264_19830 0.83 -0.1 4,577,048 + CA264_19830 0.84 -0.1 4,577,067 + CA264_19830 0.85 -1.0 4,577,158 - -0.0 4,577,158 - +0.1 4,577,284 - +0.5 4,577,287 + -0.1
Or see this region's nucleotide sequence