Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19740

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19730 and CA264_19735 are separated by 164 nucleotidesCA264_19735 and CA264_19740 overlap by 8 nucleotidesCA264_19740 and CA264_19745 are separated by 20 nucleotides CA264_19730: CA264_19730 - peptidylprolyl isomerase, at 4,553,656 to 4,555,956 _19730 CA264_19735: CA264_19735 - ATP-binding protein, at 4,556,121 to 4,556,531 _19735 CA264_19740: CA264_19740 - anti-sigma F factor antagonist, at 4,556,524 to 4,556,862 _19740 CA264_19745: CA264_19745 - serine/threonine protein phosphatase, at 4,556,883 to 4,559,048 _19745 Position (kb) 4556 4557Strain fitness (log2 ratio) -2 -1 0 1 2at 4555.593 kb on - strand, within CA264_19730at 4555.637 kb on + strand, within CA264_19730at 4555.638 kb on - strand, within CA264_19730at 4555.745 kb on + strandat 4555.746 kb on - strandat 4555.746 kb on - strandat 4555.758 kb on - strandat 4555.781 kb on + strandat 4555.781 kb on + strandat 4555.782 kb on - strandat 4555.782 kb on - strandat 4555.814 kb on + strandat 4555.814 kb on + strandat 4555.815 kb on - strandat 4555.836 kb on + strandat 4555.837 kb on - strandat 4555.837 kb on - strandat 4555.837 kb on - strandat 4555.842 kb on + strandat 4555.842 kb on + strandat 4555.842 kb on + strandat 4555.842 kb on + strandat 4555.843 kb on - strandat 4555.861 kb on - strandat 4555.933 kb on + strandat 4555.933 kb on + strandat 4555.939 kb on + strandat 4555.940 kb on - strandat 4555.940 kb on - strandat 4555.956 kb on + strandat 4556.006 kb on - strandat 4556.035 kb on + strandat 4556.036 kb on - strandat 4556.036 kb on - strandat 4556.109 kb on + strandat 4556.110 kb on - strandat 4556.110 kb on - strandat 4556.122 kb on + strandat 4556.122 kb on + strandat 4556.123 kb on - strandat 4556.525 kb on + strandat 4556.679 kb on + strand, within CA264_19740at 4556.709 kb on - strand, within CA264_19740at 4556.744 kb on + strand, within CA264_19740at 4556.868 kb on + strandat 4556.869 kb on - strandat 4556.938 kb on + strandat 4556.976 kb on + strandat 4556.977 kb on - strandat 4556.978 kb on + strandat 4556.979 kb on - strandat 4556.979 kb on - strandat 4556.991 kb on - strandat 4557.014 kb on - strandat 4557.031 kb on + strandat 4557.031 kb on + strandat 4557.031 kb on + strandat 4557.032 kb on - strandat 4557.097 kb on + strandat 4557.098 kb on - strandat 4557.100 kb on - strand, within CA264_19745at 4557.100 kb on - strand, within CA264_19745at 4557.100 kb on - strand, within CA264_19745at 4557.125 kb on - strand, within CA264_19745at 4557.125 kb on - strand, within CA264_19745at 4557.130 kb on + strand, within CA264_19745at 4557.130 kb on + strand, within CA264_19745at 4557.131 kb on - strand, within CA264_19745at 4557.131 kb on - strand, within CA264_19745at 4557.131 kb on - strand, within CA264_19745at 4557.133 kb on + strand, within CA264_19745at 4557.134 kb on - strand, within CA264_19745at 4557.158 kb on - strand, within CA264_19745at 4557.206 kb on - strand, within CA264_19745at 4557.224 kb on + strand, within CA264_19745at 4557.225 kb on - strand, within CA264_19745at 4557.230 kb on + strand, within CA264_19745at 4557.230 kb on + strand, within CA264_19745at 4557.231 kb on - strand, within CA264_19745at 4557.231 kb on - strand, within CA264_19745at 4557.232 kb on + strand, within CA264_19745at 4557.232 kb on + strand, within CA264_19745at 4557.232 kb on + strand, within CA264_19745at 4557.233 kb on - strand, within CA264_19745at 4557.235 kb on + strand, within CA264_19745at 4557.235 kb on + strand, within CA264_19745at 4557.236 kb on - strand, within CA264_19745at 4557.236 kb on - strand, within CA264_19745at 4557.236 kb on - strand, within CA264_19745at 4557.269 kb on + strand, within CA264_19745at 4557.287 kb on - strand, within CA264_19745at 4557.299 kb on - strand, within CA264_19745at 4557.635 kb on + strand, within CA264_19745at 4557.636 kb on - strand, within CA264_19745at 4557.636 kb on - strand, within CA264_19745at 4557.637 kb on + strand, within CA264_19745at 4557.682 kb on - strand, within CA264_19745at 4557.682 kb on - strand, within CA264_19745at 4557.682 kb on - strand, within CA264_19745at 4557.682 kb on - strand, within CA264_19745at 4557.750 kb on + strand, within CA264_19745at 4557.750 kb on + strand, within CA264_19745at 4557.751 kb on - strand, within CA264_19745at 4557.751 kb on - strand, within CA264_19745at 4557.807 kb on + strand, within CA264_19745

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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4,555,593 - CA264_19730 0.84 +0.5
4,555,637 + CA264_19730 0.86 +0.7
4,555,638 - CA264_19730 0.86 +0.2
4,555,745 + -0.8
4,555,746 - +0.2
4,555,746 - +0.5
4,555,758 - +1.7
4,555,781 + +0.2
4,555,781 + +0.2
4,555,782 - -0.2
4,555,782 - -0.0
4,555,814 + -0.1
4,555,814 + -0.5
4,555,815 - -0.5
4,555,836 + +0.4
4,555,837 - -1.0
4,555,837 - +0.5
4,555,837 - +0.7
4,555,842 + -0.8
4,555,842 + -0.8
4,555,842 + -0.2
4,555,842 + -0.3
4,555,843 - +0.2
4,555,861 - -0.2
4,555,933 + +0.5
4,555,933 + -0.3
4,555,939 + -1.9
4,555,940 - -0.4
4,555,940 - +0.2
4,555,956 + -0.4
4,556,006 - +0.2
4,556,035 + +0.1
4,556,036 - +0.7
4,556,036 - -0.9
4,556,109 + +0.7
4,556,110 - -1.4
4,556,110 - -1.3
4,556,122 + -0.8
4,556,122 + -0.2
4,556,123 - +0.5
4,556,525 + -0.8
4,556,679 + CA264_19740 0.46 -0.5
4,556,709 - CA264_19740 0.55 -0.9
4,556,744 + CA264_19740 0.65 -0.2
4,556,868 + +0.8
4,556,869 - +0.2
4,556,938 + -0.7
4,556,976 + -0.7
4,556,977 - -0.2
4,556,978 + -0.1
4,556,979 - -0.0
4,556,979 - +2.0
4,556,991 - -0.5
4,557,014 - -0.2
4,557,031 + +0.1
4,557,031 + -0.9
4,557,031 + -1.4
4,557,032 - -0.4
4,557,097 + +0.2
4,557,098 - -0.4
4,557,100 - CA264_19745 0.10 -0.6
4,557,100 - CA264_19745 0.10 -0.8
4,557,100 - CA264_19745 0.10 +0.6
4,557,125 - CA264_19745 0.11 +0.2
4,557,125 - CA264_19745 0.11 -0.5
4,557,130 + CA264_19745 0.11 -0.6
4,557,130 + CA264_19745 0.11 -0.1
4,557,131 - CA264_19745 0.11 -0.4
4,557,131 - CA264_19745 0.11 -0.4
4,557,131 - CA264_19745 0.11 -0.2
4,557,133 + CA264_19745 0.12 -0.6
4,557,134 - CA264_19745 0.12 +0.3
4,557,158 - CA264_19745 0.13 +0.1
4,557,206 - CA264_19745 0.15 +0.0
4,557,224 + CA264_19745 0.16 +0.6
4,557,225 - CA264_19745 0.16 -0.2
4,557,230 + CA264_19745 0.16 +0.7
4,557,230 + CA264_19745 0.16 -0.3
4,557,231 - CA264_19745 0.16 -0.5
4,557,231 - CA264_19745 0.16 +0.8
4,557,232 + CA264_19745 0.16 +0.8
4,557,232 + CA264_19745 0.16 +0.4
4,557,232 + CA264_19745 0.16 +0.7
4,557,233 - CA264_19745 0.16 -0.3
4,557,235 + CA264_19745 0.16 -0.9
4,557,235 + CA264_19745 0.16 -0.3
4,557,236 - CA264_19745 0.16 -0.3
4,557,236 - CA264_19745 0.16 +0.1
4,557,236 - CA264_19745 0.16 +0.5
4,557,269 + CA264_19745 0.18 -0.3
4,557,287 - CA264_19745 0.19 +0.0
4,557,299 - CA264_19745 0.19 +0.4
4,557,635 + CA264_19745 0.35 -0.5
4,557,636 - CA264_19745 0.35 -0.1
4,557,636 - CA264_19745 0.35 +0.2
4,557,637 + CA264_19745 0.35 -0.8
4,557,682 - CA264_19745 0.37 -1.3
4,557,682 - CA264_19745 0.37 -0.5
4,557,682 - CA264_19745 0.37 +0.2
4,557,682 - CA264_19745 0.37 -0.8
4,557,750 + CA264_19745 0.40 +0.2
4,557,750 + CA264_19745 0.40 -1.1
4,557,751 - CA264_19745 0.40 -0.3
4,557,751 - CA264_19745 0.40 +0.3
4,557,807 + CA264_19745 0.43 +0.4

Or see this region's nucleotide sequence