Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19180

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19175 and CA264_19180 are separated by 160 nucleotidesCA264_19180 and CA264_19185 are separated by 166 nucleotides CA264_19175: CA264_19175 - hypothetical protein, at 4,453,746 to 4,454,933 _19175 CA264_19180: CA264_19180 - cell wall anchor protein, at 4,455,094 to 4,455,789 _19180 CA264_19185: CA264_19185 - adenosylhomocysteinase, at 4,455,956 to 4,457,263 _19185 Position (kb) 4455 4456Strain fitness (log2 ratio) -2 -1 0 1at 4454.114 kb on - strand, within CA264_19175at 4454.153 kb on + strand, within CA264_19175at 4454.154 kb on - strand, within CA264_19175at 4454.239 kb on + strand, within CA264_19175at 4454.239 kb on + strand, within CA264_19175at 4454.244 kb on + strand, within CA264_19175at 4454.253 kb on + strand, within CA264_19175at 4454.281 kb on - strand, within CA264_19175at 4454.462 kb on - strand, within CA264_19175at 4454.557 kb on + strand, within CA264_19175at 4454.557 kb on + strand, within CA264_19175at 4454.558 kb on - strand, within CA264_19175at 4454.566 kb on - strand, within CA264_19175at 4454.694 kb on - strand, within CA264_19175at 4454.694 kb on - strand, within CA264_19175at 4454.922 kb on - strandat 4454.934 kb on - strandat 4454.934 kb on - strandat 4454.969 kb on - strandat 4454.990 kb on - strandat 4454.990 kb on - strandat 4454.990 kb on - strandat 4454.990 kb on - strandat 4454.990 kb on - strandat 4454.990 kb on - strandat 4454.994 kb on - strandat 4455.006 kb on + strandat 4455.247 kb on + strand, within CA264_19180at 4455.248 kb on - strand, within CA264_19180at 4455.286 kb on + strand, within CA264_19180at 4455.305 kb on - strand, within CA264_19180at 4455.305 kb on - strand, within CA264_19180at 4455.337 kb on - strand, within CA264_19180at 4455.341 kb on + strand, within CA264_19180at 4455.341 kb on + strand, within CA264_19180at 4455.342 kb on - strand, within CA264_19180at 4455.342 kb on - strand, within CA264_19180at 4455.419 kb on + strand, within CA264_19180at 4455.419 kb on + strand, within CA264_19180at 4455.420 kb on - strand, within CA264_19180at 4455.606 kb on + strand, within CA264_19180at 4455.606 kb on + strand, within CA264_19180at 4455.607 kb on - strand, within CA264_19180at 4455.614 kb on + strand, within CA264_19180at 4455.628 kb on + strand, within CA264_19180at 4455.628 kb on + strand, within CA264_19180at 4455.629 kb on - strand, within CA264_19180at 4455.629 kb on - strand, within CA264_19180at 4455.804 kb on + strandat 4455.804 kb on + strandat 4455.893 kb on + strandat 4455.894 kb on - strandat 4455.894 kb on - strandat 4455.896 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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4,454,114 - CA264_19175 0.31 +0.0
4,454,153 + CA264_19175 0.34 +0.3
4,454,154 - CA264_19175 0.34 +0.2
4,454,239 + CA264_19175 0.41 -0.2
4,454,239 + CA264_19175 0.41 -0.0
4,454,244 + CA264_19175 0.42 -0.6
4,454,253 + CA264_19175 0.43 -0.0
4,454,281 - CA264_19175 0.45 -0.1
4,454,462 - CA264_19175 0.60 +1.2
4,454,557 + CA264_19175 0.68 -1.3
4,454,557 + CA264_19175 0.68 -0.9
4,454,558 - CA264_19175 0.68 +0.5
4,454,566 - CA264_19175 0.69 +1.4
4,454,694 - CA264_19175 0.80 +0.0
4,454,694 - CA264_19175 0.80 -0.8
4,454,922 - -0.3
4,454,934 - +1.0
4,454,934 - +0.3
4,454,969 - +0.1
4,454,990 - -0.7
4,454,990 - +0.1
4,454,990 - -0.5
4,454,990 - -0.5
4,454,990 - -0.3
4,454,990 - +0.5
4,454,994 - -2.3
4,455,006 + -0.1
4,455,247 + CA264_19180 0.22 -0.5
4,455,248 - CA264_19180 0.22 -0.0
4,455,286 + CA264_19180 0.28 -0.3
4,455,305 - CA264_19180 0.30 -0.1
4,455,305 - CA264_19180 0.30 -0.6
4,455,337 - CA264_19180 0.35 -0.3
4,455,341 + CA264_19180 0.35 +0.1
4,455,341 + CA264_19180 0.35 -0.2
4,455,342 - CA264_19180 0.36 +0.4
4,455,342 - CA264_19180 0.36 +0.2
4,455,419 + CA264_19180 0.47 +0.2
4,455,419 + CA264_19180 0.47 +0.1
4,455,420 - CA264_19180 0.47 +0.5
4,455,606 + CA264_19180 0.74 +0.6
4,455,606 + CA264_19180 0.74 +0.4
4,455,607 - CA264_19180 0.74 +0.1
4,455,614 + CA264_19180 0.75 +0.3
4,455,628 + CA264_19180 0.77 -0.4
4,455,628 + CA264_19180 0.77 +1.2
4,455,629 - CA264_19180 0.77 +0.9
4,455,629 - CA264_19180 0.77 +0.1
4,455,804 + -0.2
4,455,804 + -0.5
4,455,893 + +1.0
4,455,894 - -0.6
4,455,894 - -0.3
4,455,896 + -0.1

Or see this region's nucleotide sequence