Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16505

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16495 and CA264_16500 are separated by 92 nucleotidesCA264_16500 and CA264_16505 are separated by 6 nucleotidesCA264_16505 and CA264_16510 are separated by 86 nucleotidesCA264_16510 and CA264_16515 are separated by 73 nucleotides CA264_16495: CA264_16495 - LemA family protein, at 3,834,451 to 3,835,029 _16495 CA264_16500: CA264_16500 - hypothetical protein, at 3,835,122 to 3,835,559 _16500 CA264_16505: CA264_16505 - methanol dehydrogenase, at 3,835,566 to 3,836,339 _16505 CA264_16510: CA264_16510 - hypothetical protein, at 3,836,426 to 3,836,623 _16510 CA264_16515: CA264_16515 - histidine kinase, at 3,836,697 to 3,839,345 _16515 Position (kb) 3835 3836 3837Strain fitness (log2 ratio) -3 -2 -1 0 1at 3834.664 kb on - strand, within CA264_16495at 3834.666 kb on - strand, within CA264_16495at 3834.666 kb on - strand, within CA264_16495at 3834.910 kb on + strand, within CA264_16495at 3835.050 kb on - strandat 3835.083 kb on - strandat 3835.091 kb on + strandat 3835.117 kb on - strandat 3835.244 kb on - strand, within CA264_16500at 3835.465 kb on + strand, within CA264_16500at 3835.557 kb on + strandat 3835.557 kb on + strandat 3835.565 kb on + strandat 3835.566 kb on - strandat 3835.584 kb on - strandat 3835.669 kb on - strand, within CA264_16505at 3835.842 kb on + strand, within CA264_16505at 3835.843 kb on - strand, within CA264_16505at 3835.920 kb on + strand, within CA264_16505at 3835.920 kb on + strand, within CA264_16505at 3835.920 kb on + strand, within CA264_16505at 3835.921 kb on - strand, within CA264_16505at 3835.921 kb on - strand, within CA264_16505at 3835.921 kb on - strand, within CA264_16505at 3835.924 kb on + strand, within CA264_16505at 3835.924 kb on + strand, within CA264_16505at 3835.963 kb on + strand, within CA264_16505at 3836.019 kb on - strand, within CA264_16505at 3836.216 kb on - strand, within CA264_16505at 3836.356 kb on + strandat 3836.356 kb on + strandat 3836.357 kb on - strandat 3836.365 kb on - strandat 3836.413 kb on - strandat 3836.636 kb on + strandat 3836.637 kb on - strandat 3836.646 kb on - strandat 3836.693 kb on - strandat 3836.693 kb on - strandat 3836.693 kb on - strandat 3836.719 kb on + strandat 3836.720 kb on - strandat 3836.720 kb on - strandat 3836.787 kb on + strandat 3836.787 kb on + strandat 3836.788 kb on - strandat 3836.788 kb on - strandat 3836.798 kb on + strandat 3836.798 kb on + strandat 3836.798 kb on + strandat 3836.798 kb on + strandat 3836.873 kb on + strandat 3836.969 kb on + strand, within CA264_16515at 3836.978 kb on - strand, within CA264_16515at 3837.035 kb on + strand, within CA264_16515at 3837.079 kb on - strand, within CA264_16515

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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3,834,664 - CA264_16495 0.37 -2.9
3,834,666 - CA264_16495 0.37 -2.0
3,834,666 - CA264_16495 0.37 -2.3
3,834,910 + CA264_16495 0.79 +1.0
3,835,050 - -1.9
3,835,083 - -1.0
3,835,091 + -2.3
3,835,117 - -1.5
3,835,244 - CA264_16500 0.28 -0.6
3,835,465 + CA264_16500 0.78 -2.1
3,835,557 + -1.4
3,835,557 + -0.7
3,835,565 + +0.2
3,835,566 - -1.1
3,835,584 - -0.6
3,835,669 - CA264_16505 0.13 -0.1
3,835,842 + CA264_16505 0.36 -0.6
3,835,843 - CA264_16505 0.36 +0.3
3,835,920 + CA264_16505 0.46 +0.6
3,835,920 + CA264_16505 0.46 -0.7
3,835,920 + CA264_16505 0.46 +0.1
3,835,921 - CA264_16505 0.46 +0.6
3,835,921 - CA264_16505 0.46 -0.6
3,835,921 - CA264_16505 0.46 -0.3
3,835,924 + CA264_16505 0.46 -0.1
3,835,924 + CA264_16505 0.46 -0.9
3,835,963 + CA264_16505 0.51 -0.6
3,836,019 - CA264_16505 0.59 -0.2
3,836,216 - CA264_16505 0.84 -0.3
3,836,356 + +0.3
3,836,356 + +0.0
3,836,357 - -1.1
3,836,365 - -1.1
3,836,413 - -0.1
3,836,636 + -0.3
3,836,637 - -0.2
3,836,646 - -0.5
3,836,693 - -0.2
3,836,693 - -1.3
3,836,693 - -0.3
3,836,719 + -0.3
3,836,720 - +0.5
3,836,720 - +0.7
3,836,787 + -0.6
3,836,787 + -0.1
3,836,788 - -1.2
3,836,788 - -0.2
3,836,798 + +0.6
3,836,798 + -0.0
3,836,798 + -0.0
3,836,798 + -0.1
3,836,873 + +0.3
3,836,969 + CA264_16515 0.10 -0.2
3,836,978 - CA264_16515 0.11 -0.2
3,837,035 + CA264_16515 0.13 -0.5
3,837,079 - CA264_16515 0.14 +0.1

Or see this region's nucleotide sequence