Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15100

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15090 and CA264_15095 are separated by 77 nucleotidesCA264_15095 and CA264_15100 are separated by 16 nucleotidesCA264_15100 and CA264_15105 are separated by 279 nucleotidesCA264_15105 and CA264_15110 are separated by 232 nucleotides CA264_15090: CA264_15090 - STAS/SEC14 domain-containing protein, at 3,542,615 to 3,543,352 _15090 CA264_15095: CA264_15095 - hypothetical protein, at 3,543,430 to 3,543,627 _15095 CA264_15100: CA264_15100 - hypothetical protein, at 3,543,644 to 3,544,213 _15100 CA264_15105: CA264_15105 - hypothetical protein, at 3,544,493 to 3,544,726 _15105 CA264_15110: CA264_15110 - hypothetical protein, at 3,544,959 to 3,545,150 _15110 Position (kb) 3543 3544 3545Strain fitness (log2 ratio) -2 -1 0 1 2at 3542.656 kb on + strandat 3542.660 kb on + strandat 3542.660 kb on + strandat 3542.882 kb on + strand, within CA264_15090at 3543.045 kb on - strand, within CA264_15090at 3543.110 kb on + strand, within CA264_15090at 3543.153 kb on - strand, within CA264_15090at 3543.153 kb on - strand, within CA264_15090at 3543.179 kb on + strand, within CA264_15090at 3543.179 kb on + strand, within CA264_15090at 3543.179 kb on + strand, within CA264_15090at 3543.180 kb on - strand, within CA264_15090at 3543.217 kb on - strand, within CA264_15090at 3543.295 kb on - strandat 3543.353 kb on - strandat 3543.368 kb on + strandat 3543.419 kb on + strandat 3543.447 kb on - strandat 3543.486 kb on - strand, within CA264_15095at 3543.519 kb on - strand, within CA264_15095at 3543.603 kb on - strand, within CA264_15095at 3543.603 kb on - strand, within CA264_15095at 3543.638 kb on - strandat 3543.638 kb on - strandat 3543.644 kb on - strandat 3543.644 kb on - strandat 3543.644 kb on - strandat 3543.644 kb on - strandat 3543.662 kb on + strandat 3543.663 kb on - strandat 3543.663 kb on - strandat 3543.665 kb on + strandat 3543.665 kb on + strandat 3543.665 kb on + strandat 3543.666 kb on - strandat 3543.666 kb on - strandat 3543.666 kb on - strandat 3543.684 kb on - strandat 3543.684 kb on - strandat 3543.717 kb on - strand, within CA264_15100at 3543.743 kb on + strand, within CA264_15100at 3543.744 kb on - strand, within CA264_15100at 3543.758 kb on + strand, within CA264_15100at 3543.758 kb on + strand, within CA264_15100at 3543.759 kb on - strand, within CA264_15100at 3543.768 kb on - strand, within CA264_15100at 3543.792 kb on + strand, within CA264_15100at 3543.793 kb on - strand, within CA264_15100at 3543.824 kb on + strand, within CA264_15100at 3543.834 kb on - strand, within CA264_15100at 3543.895 kb on + strand, within CA264_15100at 3543.896 kb on - strand, within CA264_15100at 3544.005 kb on - strand, within CA264_15100at 3544.007 kb on + strand, within CA264_15100at 3544.029 kb on + strand, within CA264_15100at 3544.029 kb on + strand, within CA264_15100at 3544.029 kb on + strand, within CA264_15100at 3544.029 kb on + strand, within CA264_15100at 3544.029 kb on + strand, within CA264_15100at 3544.029 kb on + strand, within CA264_15100at 3544.030 kb on - strand, within CA264_15100at 3544.091 kb on + strand, within CA264_15100at 3544.091 kb on + strand, within CA264_15100at 3544.104 kb on - strand, within CA264_15100at 3544.106 kb on + strand, within CA264_15100at 3544.107 kb on - strand, within CA264_15100at 3544.107 kb on - strand, within CA264_15100at 3544.179 kb on + strandat 3544.233 kb on - strandat 3544.273 kb on + strandat 3544.279 kb on + strandat 3544.279 kb on + strandat 3544.286 kb on + strandat 3544.287 kb on - strandat 3544.289 kb on + strandat 3544.292 kb on + strandat 3544.292 kb on + strandat 3544.292 kb on + strandat 3544.491 kb on - strandat 3544.494 kb on + strandat 3544.495 kb on - strandat 3544.499 kb on + strandat 3544.502 kb on + strandat 3544.502 kb on + strandat 3544.503 kb on - strandat 3544.507 kb on + strandat 3544.508 kb on - strandat 3544.508 kb on - strandat 3544.508 kb on - strandat 3544.508 kb on - strandat 3544.508 kb on - strandat 3544.510 kb on + strandat 3544.511 kb on - strandat 3544.514 kb on + strandat 3544.514 kb on + strandat 3544.515 kb on - strandat 3544.539 kb on + strand, within CA264_15105at 3544.540 kb on - strand, within CA264_15105at 3544.540 kb on - strand, within CA264_15105at 3544.580 kb on + strand, within CA264_15105at 3544.580 kb on + strand, within CA264_15105at 3544.616 kb on + strand, within CA264_15105at 3544.616 kb on + strand, within CA264_15105at 3544.704 kb on - strandat 3544.704 kb on - strandat 3544.708 kb on + strandat 3544.716 kb on - strandat 3544.726 kb on + strandat 3544.961 kb on - strandat 3545.050 kb on - strand, within CA264_15110at 3545.139 kb on + strandat 3545.139 kb on + strandat 3545.140 kb on - strandat 3545.140 kb on - strandat 3545.140 kb on - strandat 3545.164 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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3,542,656 + -0.6
3,542,660 + -0.2
3,542,660 + -0.5
3,542,882 + CA264_15090 0.36 -0.8
3,543,045 - CA264_15090 0.58 -1.1
3,543,110 + CA264_15090 0.67 +0.0
3,543,153 - CA264_15090 0.73 -0.6
3,543,153 - CA264_15090 0.73 -0.3
3,543,179 + CA264_15090 0.76 -0.7
3,543,179 + CA264_15090 0.76 -1.0
3,543,179 + CA264_15090 0.76 -2.2
3,543,180 - CA264_15090 0.77 -0.5
3,543,217 - CA264_15090 0.82 -0.7
3,543,295 - +0.4
3,543,353 - -0.1
3,543,368 + +1.4
3,543,419 + -0.5
3,543,447 - -0.3
3,543,486 - CA264_15095 0.28 -0.5
3,543,519 - CA264_15095 0.45 -0.3
3,543,603 - CA264_15095 0.87 -0.1
3,543,603 - CA264_15095 0.87 -0.4
3,543,638 - -0.0
3,543,638 - -1.3
3,543,644 - -1.0
3,543,644 - -0.7
3,543,644 - +0.3
3,543,644 - +0.4
3,543,662 + -0.1
3,543,663 - -0.1
3,543,663 - -0.4
3,543,665 + -0.5
3,543,665 + -0.7
3,543,665 + -0.1
3,543,666 - -0.2
3,543,666 - -0.4
3,543,666 - +0.3
3,543,684 - +0.3
3,543,684 - -0.3
3,543,717 - CA264_15100 0.13 +0.1
3,543,743 + CA264_15100 0.17 -0.6
3,543,744 - CA264_15100 0.18 -1.2
3,543,758 + CA264_15100 0.20 +0.0
3,543,758 + CA264_15100 0.20 +0.0
3,543,759 - CA264_15100 0.20 -0.6
3,543,768 - CA264_15100 0.22 +0.2
3,543,792 + CA264_15100 0.26 +1.1
3,543,793 - CA264_15100 0.26 -1.7
3,543,824 + CA264_15100 0.32 +0.1
3,543,834 - CA264_15100 0.33 -0.9
3,543,895 + CA264_15100 0.44 +0.3
3,543,896 - CA264_15100 0.44 -0.4
3,544,005 - CA264_15100 0.63 +0.1
3,544,007 + CA264_15100 0.64 -0.4
3,544,029 + CA264_15100 0.68 +0.5
3,544,029 + CA264_15100 0.68 +2.3
3,544,029 + CA264_15100 0.68 -0.2
3,544,029 + CA264_15100 0.68 -0.7
3,544,029 + CA264_15100 0.68 +0.2
3,544,029 + CA264_15100 0.68 -0.1
3,544,030 - CA264_15100 0.68 +0.2
3,544,091 + CA264_15100 0.78 -0.7
3,544,091 + CA264_15100 0.78 -0.5
3,544,104 - CA264_15100 0.81 -1.8
3,544,106 + CA264_15100 0.81 -0.0
3,544,107 - CA264_15100 0.81 -0.6
3,544,107 - CA264_15100 0.81 -0.1
3,544,179 + -0.0
3,544,233 - -0.2
3,544,273 + -0.6
3,544,279 + -1.2
3,544,279 + -0.1
3,544,286 + +0.6
3,544,287 - +0.7
3,544,289 + -0.7
3,544,292 + +0.1
3,544,292 + -1.2
3,544,292 + -0.7
3,544,491 - -0.4
3,544,494 + +0.1
3,544,495 - -0.3
3,544,499 + -0.7
3,544,502 + +0.6
3,544,502 + +0.9
3,544,503 - -0.5
3,544,507 + -0.4
3,544,508 - -0.7
3,544,508 - -0.0
3,544,508 - +1.3
3,544,508 - -0.3
3,544,508 - -0.0
3,544,510 + -0.0
3,544,511 - -1.0
3,544,514 + -0.5
3,544,514 + -0.3
3,544,515 - -0.8
3,544,539 + CA264_15105 0.20 -0.3
3,544,540 - CA264_15105 0.20 +0.6
3,544,540 - CA264_15105 0.20 +0.2
3,544,580 + CA264_15105 0.37 -0.4
3,544,580 + CA264_15105 0.37 -0.2
3,544,616 + CA264_15105 0.53 +0.7
3,544,616 + CA264_15105 0.53 -0.0
3,544,704 - -0.1
3,544,704 - -0.4
3,544,708 + -1.0
3,544,716 - +0.9
3,544,726 + -0.5
3,544,961 - -1.3
3,545,050 - CA264_15110 0.47 +1.7
3,545,139 + +2.5
3,545,139 + +0.2
3,545,140 - +0.7
3,545,140 - -0.8
3,545,140 - -0.5
3,545,164 + -2.0

Or see this region's nucleotide sequence