Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15040

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15035 and CA264_15040 are separated by 59 nucleotidesCA264_15040 and CA264_15045 are separated by 37 nucleotides CA264_15035: CA264_15035 - acyl-CoA dehydrogenase, at 3,529,176 to 3,530,966 _15035 CA264_15040: CA264_15040 - four helix bundle protein, at 3,531,026 to 3,531,385 _15040 CA264_15045: CA264_15045 - acetyl-CoA acetyltransferase, at 3,531,423 to 3,532,601 _15045 Position (kb) 3531 3532Strain fitness (log2 ratio) -2 -1 0 1at 3530.048 kb on - strand, within CA264_15035at 3530.051 kb on + strand, within CA264_15035at 3530.081 kb on + strand, within CA264_15035at 3530.104 kb on + strand, within CA264_15035at 3530.105 kb on - strand, within CA264_15035at 3530.147 kb on + strand, within CA264_15035at 3530.148 kb on - strand, within CA264_15035at 3530.166 kb on - strand, within CA264_15035at 3530.343 kb on - strand, within CA264_15035at 3530.352 kb on - strand, within CA264_15035at 3530.367 kb on + strand, within CA264_15035at 3530.440 kb on + strand, within CA264_15035at 3530.440 kb on + strand, within CA264_15035at 3530.441 kb on - strand, within CA264_15035at 3530.441 kb on - strand, within CA264_15035at 3530.522 kb on - strand, within CA264_15035at 3530.560 kb on + strand, within CA264_15035at 3530.606 kb on + strand, within CA264_15035at 3530.607 kb on - strand, within CA264_15035at 3530.619 kb on - strand, within CA264_15035at 3530.687 kb on + strand, within CA264_15035at 3530.710 kb on + strand, within CA264_15035at 3530.840 kb on + strandat 3530.886 kb on + strandat 3530.887 kb on - strandat 3530.892 kb on + strandat 3530.893 kb on - strandat 3530.970 kb on + strandat 3530.970 kb on + strandat 3530.980 kb on + strandat 3530.988 kb on - strandat 3531.000 kb on + strandat 3531.001 kb on - strandat 3531.028 kb on - strandat 3531.028 kb on - strandat 3531.028 kb on - strandat 3531.037 kb on + strandat 3531.037 kb on + strandat 3531.095 kb on + strand, within CA264_15040at 3531.095 kb on + strand, within CA264_15040at 3531.105 kb on - strand, within CA264_15040at 3531.269 kb on + strand, within CA264_15040at 3531.281 kb on - strand, within CA264_15040at 3531.281 kb on - strand, within CA264_15040at 3531.324 kb on + strand, within CA264_15040at 3531.324 kb on + strand, within CA264_15040at 3531.324 kb on + strand, within CA264_15040at 3531.324 kb on + strand, within CA264_15040at 3531.324 kb on + strand, within CA264_15040at 3531.326 kb on + strand, within CA264_15040at 3531.327 kb on - strand, within CA264_15040at 3531.338 kb on + strand, within CA264_15040at 3531.405 kb on - strandat 3531.480 kb on + strandat 3531.481 kb on - strandat 3531.778 kb on - strand, within CA264_15045at 3531.882 kb on + strand, within CA264_15045at 3531.888 kb on - strand, within CA264_15045at 3531.888 kb on - strand, within CA264_15045at 3531.969 kb on + strand, within CA264_15045at 3531.970 kb on - strand, within CA264_15045at 3531.974 kb on - strand, within CA264_15045at 3531.974 kb on - strand, within CA264_15045at 3531.974 kb on - strand, within CA264_15045at 3532.140 kb on + strand, within CA264_15045at 3532.202 kb on - strand, within CA264_15045at 3532.253 kb on + strand, within CA264_15045

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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3,530,048 - CA264_15035 0.49 -0.2
3,530,051 + CA264_15035 0.49 +0.2
3,530,081 + CA264_15035 0.51 -1.1
3,530,104 + CA264_15035 0.52 +0.0
3,530,105 - CA264_15035 0.52 +0.5
3,530,147 + CA264_15035 0.54 +0.5
3,530,148 - CA264_15035 0.54 +0.5
3,530,166 - CA264_15035 0.55 +0.5
3,530,343 - CA264_15035 0.65 +0.9
3,530,352 - CA264_15035 0.66 -1.0
3,530,367 + CA264_15035 0.66 +1.4
3,530,440 + CA264_15035 0.71 -0.0
3,530,440 + CA264_15035 0.71 -0.3
3,530,441 - CA264_15035 0.71 +0.2
3,530,441 - CA264_15035 0.71 -0.4
3,530,522 - CA264_15035 0.75 +1.4
3,530,560 + CA264_15035 0.77 +1.2
3,530,606 + CA264_15035 0.80 -0.5
3,530,607 - CA264_15035 0.80 -0.2
3,530,619 - CA264_15035 0.81 +0.6
3,530,687 + CA264_15035 0.84 +0.3
3,530,710 + CA264_15035 0.86 +0.7
3,530,840 + +0.2
3,530,886 + -0.2
3,530,887 - -0.2
3,530,892 + +0.3
3,530,893 - +0.1
3,530,970 + -2.4
3,530,970 + -0.7
3,530,980 + +0.0
3,530,988 - -0.5
3,531,000 + +0.2
3,531,001 - +1.1
3,531,028 - -0.6
3,531,028 - +0.1
3,531,028 - -2.0
3,531,037 + -0.2
3,531,037 + -0.1
3,531,095 + CA264_15040 0.19 +0.0
3,531,095 + CA264_15040 0.19 +0.3
3,531,105 - CA264_15040 0.22 -0.1
3,531,269 + CA264_15040 0.68 +0.1
3,531,281 - CA264_15040 0.71 -2.3
3,531,281 - CA264_15040 0.71 +0.1
3,531,324 + CA264_15040 0.83 -0.0
3,531,324 + CA264_15040 0.83 -0.4
3,531,324 + CA264_15040 0.83 +0.6
3,531,324 + CA264_15040 0.83 -0.2
3,531,324 + CA264_15040 0.83 +0.2
3,531,326 + CA264_15040 0.83 +0.3
3,531,327 - CA264_15040 0.84 +1.5
3,531,338 + CA264_15040 0.87 -0.1
3,531,405 - +0.4
3,531,480 + -0.8
3,531,481 - -0.4
3,531,778 - CA264_15045 0.30 +0.4
3,531,882 + CA264_15045 0.39 -0.8
3,531,888 - CA264_15045 0.39 +0.2
3,531,888 - CA264_15045 0.39 +0.3
3,531,969 + CA264_15045 0.46 -0.3
3,531,970 - CA264_15045 0.46 +0.2
3,531,974 - CA264_15045 0.47 +0.6
3,531,974 - CA264_15045 0.47 +0.3
3,531,974 - CA264_15045 0.47 -0.9
3,532,140 + CA264_15045 0.61 +0.6
3,532,202 - CA264_15045 0.66 +0.2
3,532,253 + CA264_15045 0.70 -0.6

Or see this region's nucleotide sequence