Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13275

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13270 and CA264_13275 are separated by 182 nucleotidesCA264_13275 and CA264_13280 are separated by 84 nucleotides CA264_13270: CA264_13270 - tRNA lysidine(34) synthetase TilS, at 3,090,744 to 3,092,075 _13270 CA264_13275: CA264_13275 - malate dehydrogenase, at 3,092,258 to 3,093,196 _13275 CA264_13280: CA264_13280 - hypothetical protein, at 3,093,281 to 3,094,474 _13280 Position (kb) 3092 3093 3094Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3092.073 kb on + strandat 3092.117 kb on + strandat 3092.138 kb on + strandat 3092.139 kb on - strandat 3092.139 kb on - strandat 3092.176 kb on - strandat 3092.190 kb on - strandat 3092.220 kb on + strandat 3093.259 kb on + strandat 3093.259 kb on + strandat 3093.277 kb on + strandat 3093.291 kb on - strandat 3093.310 kb on + strandat 3093.331 kb on + strandat 3093.352 kb on + strandat 3093.352 kb on + strandat 3093.354 kb on + strandat 3093.355 kb on - strandat 3093.405 kb on + strand, within CA264_13280at 3093.429 kb on + strand, within CA264_13280at 3093.429 kb on + strand, within CA264_13280at 3093.475 kb on - strand, within CA264_13280at 3093.475 kb on - strand, within CA264_13280at 3093.515 kb on + strand, within CA264_13280at 3093.515 kb on + strand, within CA264_13280at 3093.520 kb on + strand, within CA264_13280at 3093.536 kb on + strand, within CA264_13280at 3093.538 kb on + strand, within CA264_13280at 3093.606 kb on - strand, within CA264_13280at 3093.629 kb on - strand, within CA264_13280at 3093.633 kb on + strand, within CA264_13280at 3093.634 kb on + strand, within CA264_13280at 3093.634 kb on + strand, within CA264_13280at 3093.634 kb on + strand, within CA264_13280at 3093.635 kb on - strand, within CA264_13280at 3093.638 kb on + strand, within CA264_13280at 3093.639 kb on - strand, within CA264_13280at 3093.700 kb on + strand, within CA264_13280at 3093.701 kb on - strand, within CA264_13280at 3093.758 kb on + strand, within CA264_13280at 3093.759 kb on - strand, within CA264_13280at 3093.857 kb on + strand, within CA264_13280at 3093.857 kb on + strand, within CA264_13280at 3093.880 kb on + strand, within CA264_13280at 3093.880 kb on + strand, within CA264_13280at 3093.881 kb on - strand, within CA264_13280at 3093.881 kb on - strand, within CA264_13280at 3094.047 kb on - strand, within CA264_13280at 3094.157 kb on + strand, within CA264_13280at 3094.158 kb on - strand, within CA264_13280

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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3,092,073 + +0.1
3,092,117 + +0.6
3,092,138 + -0.5
3,092,139 - -0.3
3,092,139 - +0.0
3,092,176 - -0.2
3,092,190 - -0.4
3,092,220 + -0.1
3,093,259 + -0.1
3,093,259 + -1.1
3,093,277 + +0.2
3,093,291 - +0.1
3,093,310 + +0.3
3,093,331 + +0.1
3,093,352 + +0.3
3,093,352 + -0.5
3,093,354 + -0.3
3,093,355 - -0.2
3,093,405 + CA264_13280 0.10 +0.1
3,093,429 + CA264_13280 0.12 -0.0
3,093,429 + CA264_13280 0.12 -0.3
3,093,475 - CA264_13280 0.16 +0.1
3,093,475 - CA264_13280 0.16 +0.1
3,093,515 + CA264_13280 0.20 -0.1
3,093,515 + CA264_13280 0.20 +0.8
3,093,520 + CA264_13280 0.20 -0.3
3,093,536 + CA264_13280 0.21 -1.2
3,093,538 + CA264_13280 0.22 +0.3
3,093,606 - CA264_13280 0.27 +1.3
3,093,629 - CA264_13280 0.29 +1.5
3,093,633 + CA264_13280 0.29 -0.4
3,093,634 + CA264_13280 0.30 -0.4
3,093,634 + CA264_13280 0.30 -1.2
3,093,634 + CA264_13280 0.30 +2.1
3,093,635 - CA264_13280 0.30 +0.0
3,093,638 + CA264_13280 0.30 -1.2
3,093,639 - CA264_13280 0.30 +0.0
3,093,700 + CA264_13280 0.35 -1.2
3,093,701 - CA264_13280 0.35 -0.2
3,093,758 + CA264_13280 0.40 -0.1
3,093,759 - CA264_13280 0.40 -0.2
3,093,857 + CA264_13280 0.48 +1.3
3,093,857 + CA264_13280 0.48 -0.1
3,093,880 + CA264_13280 0.50 +1.2
3,093,880 + CA264_13280 0.50 +5.4
3,093,881 - CA264_13280 0.50 +0.2
3,093,881 - CA264_13280 0.50 +0.6
3,094,047 - CA264_13280 0.64 +0.6
3,094,157 + CA264_13280 0.73 -0.1
3,094,158 - CA264_13280 0.73 +0.4

Or see this region's nucleotide sequence