Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11805

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11800 and CA264_11805 are separated by 194 nucleotidesCA264_11805 and CA264_11810 are separated by 204 nucleotidesCA264_11810 and CA264_11815 are separated by 103 nucleotides CA264_11800: CA264_11800 - aerotolerance protein, at 2,747,220 to 2,748,176 _11800 CA264_11805: CA264_11805 - thioesterase, at 2,748,371 to 2,748,886 _11805 CA264_11810: CA264_11810 - HAD family hydrolase, at 2,749,091 to 2,749,729 _11810 CA264_11815: CA264_11815 - hypothetical protein, at 2,749,833 to 2,750,219 _11815 Position (kb) 2748 2749Strain fitness (log2 ratio) -1 0 1at 2747.424 kb on + strand, within CA264_11800at 2747.424 kb on + strand, within CA264_11800at 2747.424 kb on + strand, within CA264_11800at 2747.453 kb on + strand, within CA264_11800at 2747.464 kb on - strand, within CA264_11800at 2747.617 kb on - strand, within CA264_11800at 2747.618 kb on + strand, within CA264_11800at 2747.619 kb on - strand, within CA264_11800at 2747.622 kb on + strand, within CA264_11800at 2747.622 kb on + strand, within CA264_11800at 2747.622 kb on + strand, within CA264_11800at 2747.623 kb on - strand, within CA264_11800at 2747.623 kb on - strand, within CA264_11800at 2747.623 kb on - strand, within CA264_11800at 2747.948 kb on - strand, within CA264_11800at 2748.044 kb on - strand, within CA264_11800at 2748.044 kb on - strand, within CA264_11800at 2748.114 kb on + strandat 2748.114 kb on + strandat 2748.114 kb on + strandat 2748.174 kb on + strandat 2748.258 kb on - strandat 2748.313 kb on - strandat 2748.364 kb on + strandat 2748.364 kb on + strandat 2748.365 kb on - strandat 2748.365 kb on - strandat 2748.473 kb on + strand, within CA264_11805at 2748.521 kb on + strand, within CA264_11805at 2748.533 kb on - strand, within CA264_11805at 2748.534 kb on + strand, within CA264_11805at 2748.534 kb on + strand, within CA264_11805at 2748.535 kb on - strand, within CA264_11805at 2748.536 kb on + strand, within CA264_11805at 2748.536 kb on + strand, within CA264_11805at 2748.537 kb on - strand, within CA264_11805at 2748.537 kb on - strand, within CA264_11805at 2748.537 kb on - strand, within CA264_11805at 2748.612 kb on - strand, within CA264_11805at 2748.624 kb on + strand, within CA264_11805at 2748.720 kb on + strand, within CA264_11805at 2748.720 kb on + strand, within CA264_11805at 2748.720 kb on + strand, within CA264_11805at 2748.720 kb on + strand, within CA264_11805at 2748.721 kb on - strand, within CA264_11805at 2748.721 kb on - strand, within CA264_11805at 2748.738 kb on - strand, within CA264_11805at 2748.835 kb on - strandat 2748.835 kb on - strandat 2748.885 kb on - strandat 2748.919 kb on + strandat 2748.920 kb on - strandat 2749.036 kb on - strandat 2749.056 kb on + strandat 2749.056 kb on + strandat 2749.057 kb on - strandat 2749.057 kb on - strandat 2749.059 kb on - strandat 2749.090 kb on + strandat 2749.149 kb on - strandat 2749.149 kb on - strandat 2749.195 kb on - strand, within CA264_11810at 2749.439 kb on + strand, within CA264_11810at 2749.465 kb on + strand, within CA264_11810at 2749.470 kb on + strand, within CA264_11810at 2749.471 kb on - strand, within CA264_11810at 2749.515 kb on + strand, within CA264_11810at 2749.624 kb on + strand, within CA264_11810at 2749.745 kb on + strandat 2749.745 kb on + strandat 2749.746 kb on - strandat 2749.794 kb on + strandat 2749.795 kb on - strandat 2749.838 kb on - strandat 2749.858 kb on - strandat 2749.872 kb on + strand, within CA264_11815at 2749.872 kb on + strand, within CA264_11815at 2749.872 kb on + strand, within CA264_11815at 2749.875 kb on - strand, within CA264_11815

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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2,747,424 + CA264_11800 0.21 +0.1
2,747,424 + CA264_11800 0.21 -0.2
2,747,424 + CA264_11800 0.21 +0.0
2,747,453 + CA264_11800 0.24 +0.1
2,747,464 - CA264_11800 0.25 +0.1
2,747,617 - CA264_11800 0.41 -0.1
2,747,618 + CA264_11800 0.42 +0.9
2,747,619 - CA264_11800 0.42 +0.0
2,747,622 + CA264_11800 0.42 +0.1
2,747,622 + CA264_11800 0.42 +0.1
2,747,622 + CA264_11800 0.42 +0.1
2,747,623 - CA264_11800 0.42 -0.0
2,747,623 - CA264_11800 0.42 -1.1
2,747,623 - CA264_11800 0.42 +0.3
2,747,948 - CA264_11800 0.76 -0.2
2,748,044 - CA264_11800 0.86 +1.6
2,748,044 - CA264_11800 0.86 +0.0
2,748,114 + +0.5
2,748,114 + -0.4
2,748,114 + -0.3
2,748,174 + +0.6
2,748,258 - -0.9
2,748,313 - -0.0
2,748,364 + +0.2
2,748,364 + -0.4
2,748,365 - -0.2
2,748,365 - +1.2
2,748,473 + CA264_11805 0.20 -0.1
2,748,521 + CA264_11805 0.29 +0.1
2,748,533 - CA264_11805 0.31 +0.4
2,748,534 + CA264_11805 0.32 +0.4
2,748,534 + CA264_11805 0.32 +1.2
2,748,535 - CA264_11805 0.32 +0.4
2,748,536 + CA264_11805 0.32 -0.4
2,748,536 + CA264_11805 0.32 -0.7
2,748,537 - CA264_11805 0.32 +0.2
2,748,537 - CA264_11805 0.32 +0.0
2,748,537 - CA264_11805 0.32 +1.6
2,748,612 - CA264_11805 0.47 +0.3
2,748,624 + CA264_11805 0.49 +0.3
2,748,720 + CA264_11805 0.68 -0.3
2,748,720 + CA264_11805 0.68 -0.1
2,748,720 + CA264_11805 0.68 +0.2
2,748,720 + CA264_11805 0.68 +0.7
2,748,721 - CA264_11805 0.68 -0.2
2,748,721 - CA264_11805 0.68 +0.6
2,748,738 - CA264_11805 0.71 +1.0
2,748,835 - +0.9
2,748,835 - -0.1
2,748,885 - +0.6
2,748,919 + -0.1
2,748,920 - +0.9
2,749,036 - +0.3
2,749,056 + +1.5
2,749,056 + +0.0
2,749,057 - +1.5
2,749,057 - +1.3
2,749,059 - +0.7
2,749,090 + -0.7
2,749,149 - -0.9
2,749,149 - -0.4
2,749,195 - CA264_11810 0.16 +0.3
2,749,439 + CA264_11810 0.54 -1.4
2,749,465 + CA264_11810 0.59 -0.3
2,749,470 + CA264_11810 0.59 +0.4
2,749,471 - CA264_11810 0.59 +1.4
2,749,515 + CA264_11810 0.66 -1.2
2,749,624 + CA264_11810 0.83 -0.0
2,749,745 + -0.6
2,749,745 + -0.4
2,749,746 - +0.6
2,749,794 + +0.4
2,749,795 - +1.4
2,749,838 - +1.1
2,749,858 - +0.1
2,749,872 + CA264_11815 0.10 +0.6
2,749,872 + CA264_11815 0.10 +1.0
2,749,872 + CA264_11815 0.10 -0.4
2,749,875 - CA264_11815 0.11 +0.6

Or see this region's nucleotide sequence