Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11260

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11255 and CA264_11260 are separated by 389 nucleotidesCA264_11260 and CA264_11265 are separated by 804 nucleotides CA264_11255: CA264_11255 - peptidase M13, at 2,604,868 to 2,606,928 _11255 CA264_11260: CA264_11260 - DNA gyrase subunit B, at 2,607,318 to 2,609,276 _11260 CA264_11265: CA264_11265 - hypothetical protein, at 2,610,081 to 2,610,500 _11265 Position (kb) 2607 2608 2609 2610Strain fitness (log2 ratio) -2 -1 0 1 2at 2606.343 kb on - strand, within CA264_11255at 2606.343 kb on - strand, within CA264_11255at 2606.346 kb on - strand, within CA264_11255at 2606.397 kb on + strand, within CA264_11255at 2606.398 kb on - strand, within CA264_11255at 2606.401 kb on + strand, within CA264_11255at 2606.401 kb on + strand, within CA264_11255at 2606.402 kb on - strand, within CA264_11255at 2606.427 kb on - strand, within CA264_11255at 2606.427 kb on - strand, within CA264_11255at 2606.468 kb on + strand, within CA264_11255at 2606.543 kb on + strand, within CA264_11255at 2606.553 kb on + strand, within CA264_11255at 2606.585 kb on + strand, within CA264_11255at 2606.585 kb on + strand, within CA264_11255at 2606.585 kb on + strand, within CA264_11255at 2606.586 kb on - strand, within CA264_11255at 2606.586 kb on - strand, within CA264_11255at 2606.596 kb on + strand, within CA264_11255at 2606.596 kb on + strand, within CA264_11255at 2606.676 kb on + strand, within CA264_11255at 2606.765 kb on + strandat 2606.808 kb on + strandat 2606.857 kb on + strandat 2606.857 kb on + strandat 2606.858 kb on - strandat 2606.887 kb on + strandat 2606.941 kb on + strandat 2606.942 kb on - strandat 2606.946 kb on - strandat 2606.951 kb on + strandat 2607.003 kb on - strandat 2607.008 kb on - strandat 2607.008 kb on - strandat 2607.047 kb on + strandat 2607.047 kb on + strandat 2607.048 kb on - strandat 2607.066 kb on + strandat 2607.066 kb on + strandat 2607.067 kb on - strandat 2607.067 kb on - strandat 2607.068 kb on + strandat 2607.068 kb on + strandat 2607.068 kb on + strandat 2607.083 kb on - strandat 2607.134 kb on + strandat 2607.198 kb on + strandat 2607.199 kb on - strandat 2607.246 kb on - strandat 2607.272 kb on - strandat 2609.265 kb on + strandat 2609.299 kb on + strandat 2609.304 kb on - strandat 2609.333 kb on - strandat 2609.432 kb on + strandat 2609.435 kb on + strandat 2609.435 kb on + strandat 2609.435 kb on + strandat 2609.435 kb on + strandat 2609.435 kb on + strandat 2609.435 kb on + strandat 2609.435 kb on + strandat 2609.435 kb on + strandat 2609.436 kb on - strandat 2609.436 kb on - strandat 2609.436 kb on - strandat 2609.453 kb on + strandat 2609.644 kb on + strandat 2609.644 kb on + strandat 2609.645 kb on - strandat 2609.645 kb on - strandat 2609.684 kb on + strandat 2609.684 kb on + strandat 2609.689 kb on + strandat 2609.743 kb on + strandat 2609.777 kb on + strandat 2609.778 kb on - strandat 2609.822 kb on + strandat 2609.823 kb on - strandat 2609.823 kb on - strandat 2609.887 kb on + strandat 2609.887 kb on + strandat 2609.901 kb on + strandat 2609.902 kb on - strandat 2609.902 kb on - strandat 2609.918 kb on + strandat 2609.919 kb on - strandat 2610.009 kb on + strandat 2610.012 kb on - strandat 2610.012 kb on - strandat 2610.047 kb on - strandat 2610.047 kb on - strandat 2610.074 kb on + strandat 2610.075 kb on - strandat 2610.080 kb on + strandat 2610.081 kb on - strandat 2610.097 kb on - strandat 2610.139 kb on - strand, within CA264_11265at 2610.142 kb on + strand, within CA264_11265at 2610.142 kb on + strand, within CA264_11265at 2610.142 kb on + strand, within CA264_11265at 2610.143 kb on - strand, within CA264_11265at 2610.143 kb on - strand, within CA264_11265at 2610.143 kb on - strand, within CA264_11265at 2610.174 kb on - strand, within CA264_11265at 2610.270 kb on + strand, within CA264_11265

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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2,606,343 - CA264_11255 0.72 -1.2
2,606,343 - CA264_11255 0.72 -0.9
2,606,346 - CA264_11255 0.72 -0.6
2,606,397 + CA264_11255 0.74 -0.5
2,606,398 - CA264_11255 0.74 +0.6
2,606,401 + CA264_11255 0.74 -0.1
2,606,401 + CA264_11255 0.74 -0.2
2,606,402 - CA264_11255 0.74 +0.7
2,606,427 - CA264_11255 0.76 +0.4
2,606,427 - CA264_11255 0.76 +0.2
2,606,468 + CA264_11255 0.78 -0.4
2,606,543 + CA264_11255 0.81 -1.0
2,606,553 + CA264_11255 0.82 +0.2
2,606,585 + CA264_11255 0.83 +1.9
2,606,585 + CA264_11255 0.83 +0.7
2,606,585 + CA264_11255 0.83 -0.3
2,606,586 - CA264_11255 0.83 -0.6
2,606,586 - CA264_11255 0.83 -1.0
2,606,596 + CA264_11255 0.84 -1.2
2,606,596 + CA264_11255 0.84 -0.5
2,606,676 + CA264_11255 0.88 -0.2
2,606,765 + -0.1
2,606,808 + +2.2
2,606,857 + +0.1
2,606,857 + +0.1
2,606,858 - -0.4
2,606,887 + +0.4
2,606,941 + +0.5
2,606,942 - +0.3
2,606,946 - +0.1
2,606,951 + +0.9
2,607,003 - -0.2
2,607,008 - -0.7
2,607,008 - -0.8
2,607,047 + -0.3
2,607,047 + -0.8
2,607,048 - -0.4
2,607,066 + -0.1
2,607,066 + +0.5
2,607,067 - -0.8
2,607,067 - +0.3
2,607,068 + +0.5
2,607,068 + -0.6
2,607,068 + -0.6
2,607,083 - -0.5
2,607,134 + +0.2
2,607,198 + -0.4
2,607,199 - +1.0
2,607,246 - +1.2
2,607,272 - +0.1
2,609,265 + -1.8
2,609,299 + -0.6
2,609,304 - -1.4
2,609,333 - +0.7
2,609,432 + +0.2
2,609,435 + -0.3
2,609,435 + -0.1
2,609,435 + -0.9
2,609,435 + -0.5
2,609,435 + -0.1
2,609,435 + -0.3
2,609,435 + -0.0
2,609,435 + +0.1
2,609,436 - -0.3
2,609,436 - +0.1
2,609,436 - +1.2
2,609,453 + +0.4
2,609,644 + +0.1
2,609,644 + +0.9
2,609,645 - +1.1
2,609,645 - -0.3
2,609,684 + +0.9
2,609,684 + -0.3
2,609,689 + -1.0
2,609,743 + +0.1
2,609,777 + -0.8
2,609,778 - +0.3
2,609,822 + +0.5
2,609,823 - -0.0
2,609,823 - -0.1
2,609,887 + -1.3
2,609,887 + -0.4
2,609,901 + -0.1
2,609,902 - -0.0
2,609,902 - +0.1
2,609,918 + -0.1
2,609,919 - +0.8
2,610,009 + +1.3
2,610,012 - +0.4
2,610,012 - +0.6
2,610,047 - -0.6
2,610,047 - -0.8
2,610,074 + -0.4
2,610,075 - -0.2
2,610,080 + +0.0
2,610,081 - -0.4
2,610,097 - +0.1
2,610,139 - CA264_11265 0.14 +0.6
2,610,142 + CA264_11265 0.15 -0.3
2,610,142 + CA264_11265 0.15 -0.7
2,610,142 + CA264_11265 0.15 +0.2
2,610,143 - CA264_11265 0.15 +0.3
2,610,143 - CA264_11265 0.15 +0.2
2,610,143 - CA264_11265 0.15 +0.1
2,610,174 - CA264_11265 0.22 +0.3
2,610,270 + CA264_11265 0.45 +0.2

Or see this region's nucleotide sequence