Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10170

Experiment: m.b. Fusidic 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10165 and CA264_10170 are separated by 30 nucleotidesCA264_10170 and CA264_10175 are separated by 143 nucleotidesCA264_10175 and CA264_10180 are separated by 148 nucleotides CA264_10165: CA264_10165 - T9SS C-terminal target domain-containing protein, at 2,361,003 to 2,363,897 _10165 CA264_10170: CA264_10170 - endonuclease, at 2,363,928 to 2,365,268 _10170 CA264_10175: CA264_10175 - hypothetical protein, at 2,365,412 to 2,365,903 _10175 CA264_10180: CA264_10180 - SOS mutagenesis and repair protein UmuC, at 2,366,052 to 2,367,320 _10180 Position (kb) 2363 2364 2365 2366Strain fitness (log2 ratio) -2 -1 0 1at 2362.988 kb on + strand, within CA264_10165at 2363.055 kb on - strand, within CA264_10165at 2363.087 kb on + strand, within CA264_10165at 2363.116 kb on - strand, within CA264_10165at 2363.872 kb on + strandat 2363.872 kb on + strandat 2363.924 kb on - strandat 2363.929 kb on + strandat 2363.929 kb on + strandat 2363.998 kb on - strandat 2364.244 kb on + strand, within CA264_10170at 2364.244 kb on + strand, within CA264_10170at 2364.263 kb on - strand, within CA264_10170at 2364.287 kb on - strand, within CA264_10170at 2364.299 kb on - strand, within CA264_10170at 2364.299 kb on - strand, within CA264_10170at 2364.598 kb on + strand, within CA264_10170at 2364.623 kb on + strand, within CA264_10170at 2364.636 kb on + strand, within CA264_10170at 2364.656 kb on + strand, within CA264_10170at 2364.657 kb on - strand, within CA264_10170at 2364.712 kb on + strand, within CA264_10170at 2364.768 kb on - strand, within CA264_10170at 2364.862 kb on + strand, within CA264_10170at 2364.937 kb on + strand, within CA264_10170at 2364.937 kb on + strand, within CA264_10170at 2365.255 kb on + strandat 2365.256 kb on - strandat 2365.264 kb on - strandat 2365.264 kb on - strandat 2365.270 kb on + strandat 2365.271 kb on - strandat 2365.271 kb on - strandat 2365.271 kb on - strandat 2365.271 kb on - strandat 2365.279 kb on + strandat 2365.351 kb on + strandat 2365.352 kb on - strandat 2365.708 kb on - strand, within CA264_10175at 2365.796 kb on + strand, within CA264_10175at 2365.796 kb on + strand, within CA264_10175at 2365.802 kb on - strand, within CA264_10175at 2365.818 kb on + strand, within CA264_10175at 2365.825 kb on + strand, within CA264_10175at 2365.826 kb on - strand, within CA264_10175at 2365.826 kb on - strand, within CA264_10175at 2365.870 kb on + strandat 2365.928 kb on + strandat 2365.968 kb on + strandat 2365.999 kb on - strandat 2366.089 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Fusidic 0.0005 mg/ml
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2,362,988 + CA264_10165 0.69 -0.9
2,363,055 - CA264_10165 0.71 +0.6
2,363,087 + CA264_10165 0.72 -0.7
2,363,116 - CA264_10165 0.73 +1.1
2,363,872 + -0.6
2,363,872 + -0.9
2,363,924 - -0.6
2,363,929 + +0.2
2,363,929 + -0.4
2,363,998 - -0.1
2,364,244 + CA264_10170 0.24 +0.2
2,364,244 + CA264_10170 0.24 -0.1
2,364,263 - CA264_10170 0.25 -0.5
2,364,287 - CA264_10170 0.27 -0.6
2,364,299 - CA264_10170 0.28 +0.8
2,364,299 - CA264_10170 0.28 -0.4
2,364,598 + CA264_10170 0.50 +0.4
2,364,623 + CA264_10170 0.52 +0.7
2,364,636 + CA264_10170 0.53 -1.1
2,364,656 + CA264_10170 0.54 +0.2
2,364,657 - CA264_10170 0.54 -0.5
2,364,712 + CA264_10170 0.58 +0.5
2,364,768 - CA264_10170 0.63 -0.4
2,364,862 + CA264_10170 0.70 -1.0
2,364,937 + CA264_10170 0.75 +0.4
2,364,937 + CA264_10170 0.75 -0.1
2,365,255 + -0.3
2,365,256 - -2.1
2,365,264 - +0.0
2,365,264 - -0.6
2,365,270 + +0.3
2,365,271 - +0.3
2,365,271 - -0.5
2,365,271 - +0.1
2,365,271 - +1.0
2,365,279 + -0.6
2,365,351 + -2.1
2,365,352 - -0.3
2,365,708 - CA264_10175 0.60 -0.1
2,365,796 + CA264_10175 0.78 +0.4
2,365,796 + CA264_10175 0.78 -0.1
2,365,802 - CA264_10175 0.79 -2.1
2,365,818 + CA264_10175 0.83 -0.1
2,365,825 + CA264_10175 0.84 +0.2
2,365,826 - CA264_10175 0.84 -0.4
2,365,826 - CA264_10175 0.84 -0.4
2,365,870 + -0.4
2,365,928 + -0.3
2,365,968 + -1.1
2,365,999 - -0.1
2,366,089 + -1.7

Or see this region's nucleotide sequence